HEADER HYDROLASE 27-JUN-07 2QFR TITLE CRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PHOSPHATASE WITH TITLE 2 BOUND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURPLE ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHASEOLUS VULGARIS; SOURCE 3 ORGANISM_COMMON: KIDNEY BEAN; SOURCE 4 ORGANISM_TAXID: 3885 KEYWDS BINUCLEAR METAL CENTRE, SUBSTRATE ANALOG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.GUDDAT,G.SCHENK,L.R.GAHAN,T.W.ELLIOT,E.LEUNG REVDAT 4 29-JUL-20 2QFR 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2QFR 1 VERSN REVDAT 2 24-FEB-09 2QFR 1 VERSN REVDAT 1 14-OCT-08 2QFR 0 JRNL AUTH G.SCHENK,T.W.ELLIOTT,E.LEUNG,L.E.CARRINGTON,N.MITIC, JRNL AUTH 2 L.R.GAHAN,L.W.GUDDAT JRNL TITL CRYSTAL STRUCTURES OF A PURPLE ACID PHOSPHATASE, JRNL TITL 2 REPRESENTING DIFFERENT STEPS OF THIS ENZYME'S CATALYTIC JRNL TITL 3 CYCLE. JRNL REF BMC STRUCT.BIOL. V. 8 6 2008 JRNL REFN ESSN 1472-6807 JRNL PMID 18234116 JRNL DOI 10.1186/1472-6807-8-6 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 55092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHTOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 5612 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6974 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.95800 REMARK 3 B22 (A**2) : -1.95800 REMARK 3 B33 (A**2) : 3.91600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.045 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.733 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.907 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.947 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 31.51 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000043542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 200 DATA REDUNDANCY : 2.760 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : 0.30200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 4KBP CHAIN B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1 M ACETATE PH REMARK 280 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 74.01500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.04500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.02250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.01500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.06750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.01500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.04500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 74.01500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 120.06750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.02250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER WHICH CORRESPONDS TO THE REMARK 300 CONTENTS OF THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 275 O LYS B 315 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 52 -70.38 -33.33 REMARK 500 LYS A 63 -91.60 -69.93 REMARK 500 ARG A 66 106.58 -54.34 REMARK 500 PHE A 79 -82.71 -114.40 REMARK 500 PHE A 80 -98.70 -109.25 REMARK 500 ASN A 98 50.66 39.27 REMARK 500 ASN A 109 -116.73 -96.18 REMARK 500 GLN A 138 43.72 -145.04 REMARK 500 ASP A 164 89.45 65.34 REMARK 500 LEU A 165 -78.93 -84.76 REMARK 500 ASP A 175 90.70 -12.51 REMARK 500 ASN A 176 -5.96 -59.77 REMARK 500 ALA A 243 -126.96 60.01 REMARK 500 TYR A 256 28.42 -143.48 REMARK 500 HIS A 323 -51.38 64.96 REMARK 500 ALA A 326 -169.64 -171.79 REMARK 500 ILE A 340 -51.18 71.19 REMARK 500 ASN A 364 -131.12 42.37 REMARK 500 LYS A 395 -64.82 -100.57 REMARK 500 PRO A 427 52.71 -63.09 REMARK 500 LYS B 63 -83.48 -71.78 REMARK 500 ASN B 64 107.63 -59.40 REMARK 500 PHE B 79 -87.51 -100.49 REMARK 500 PHE B 80 -97.72 -105.46 REMARK 500 ASN B 98 56.66 28.61 REMARK 500 ASN B 109 -119.38 -114.64 REMARK 500 GLN B 138 47.73 -143.63 REMARK 500 LYS B 155 128.54 -34.64 REMARK 500 ASP B 164 87.82 62.15 REMARK 500 LEU B 165 -79.31 -82.50 REMARK 500 ASP B 175 90.15 -11.15 REMARK 500 SER B 189 -55.16 -120.69 REMARK 500 ALA B 243 -124.12 58.58 REMARK 500 TYR B 256 28.48 -144.68 REMARK 500 HIS B 323 -52.42 66.05 REMARK 500 ALA B 326 -167.07 -174.54 REMARK 500 ILE B 340 -50.07 69.34 REMARK 500 ASN B 364 -137.28 39.76 REMARK 500 LYS B 395 -66.06 -101.41 REMARK 500 ASN B 396 -169.06 -117.74 REMARK 500 PRO B 427 55.18 -68.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 433 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD2 REMARK 620 2 ASP A 164 OD2 86.9 REMARK 620 3 TYR A 167 OH 96.9 95.4 REMARK 620 4 HIS A 325 NE2 97.2 174.1 88.4 REMARK 620 5 HOH A 454 O 127.1 90.8 135.9 83.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 434 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD2 REMARK 620 2 ASN A 201 OD1 87.8 REMARK 620 3 HIS A 286 NE2 88.7 90.0 REMARK 620 4 HIS A 323 ND1 173.3 96.1 85.9 REMARK 620 5 HOH A 454 O 80.2 112.4 154.3 103.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 433 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 135 OD2 REMARK 620 2 ASP B 164 OD2 78.5 REMARK 620 3 TYR B 167 OH 99.4 97.1 REMARK 620 4 HIS B 325 NE2 105.8 173.5 87.1 REMARK 620 5 HOH B 454 O 120.9 85.2 139.2 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 434 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 164 OD2 REMARK 620 2 ASN B 201 OD1 92.0 REMARK 620 3 HIS B 286 NE2 87.5 94.0 REMARK 620 4 HIS B 323 ND1 171.7 96.2 91.6 REMARK 620 5 HOH B 454 O 78.8 115.0 148.1 97.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KBP RELATED DB: PDB REMARK 900 FREE ENZYME REMARK 900 RELATED ID: 4KBP RELATED DB: PDB REMARK 900 PHOSPHATE COMPLEX REMARK 900 RELATED ID: 2QFP RELATED DB: PDB REMARK 900 FLUORIDE COMPLEX DBREF 2QFR A 9 432 UNP O24319 O24319_PHAVU 36 459 DBREF 2QFR B 9 432 UNP O24319 O24319_PHAVU 36 459 SEQRES 1 A 424 ARG ASP MET PRO LEU ASP SER ASP VAL PHE ARG VAL PRO SEQRES 2 A 424 PRO GLY TYR ASN ALA PRO GLN GLN VAL HIS ILE THR GLN SEQRES 3 A 424 GLY ASP LEU VAL GLY ARG ALA MET ILE ILE SER TRP VAL SEQRES 4 A 424 THR MET ASP GLU PRO GLY SER SER ALA VAL ARG TYR TRP SEQRES 5 A 424 SER GLU LYS ASN GLY ARG LYS ARG ILE ALA LYS GLY LYS SEQRES 6 A 424 MET SER THR TYR ARG PHE PHE ASN TYR SER SER GLY PHE SEQRES 7 A 424 ILE HIS HIS THR THR ILE ARG LYS LEU LYS TYR ASN THR SEQRES 8 A 424 LYS TYR TYR TYR GLU VAL GLY LEU ARG ASN THR THR ARG SEQRES 9 A 424 ARG PHE SER PHE ILE THR PRO PRO GLN THR GLY LEU ASP SEQRES 10 A 424 VAL PRO TYR THR PHE GLY LEU ILE GLY ASP LEU GLY GLN SEQRES 11 A 424 SER PHE ASP SER ASN THR THR LEU SER HIS TYR GLU LEU SEQRES 12 A 424 SER PRO LYS LYS GLY GLN THR VAL LEU PHE VAL GLY ASP SEQRES 13 A 424 LEU SER TYR ALA ASP ARG TYR PRO ASN HIS ASP ASN VAL SEQRES 14 A 424 ARG TRP ASP THR TRP GLY ARG PHE THR GLU ARG SER VAL SEQRES 15 A 424 ALA TYR GLN PRO TRP ILE TRP THR ALA GLY ASN HIS GLU SEQRES 16 A 424 ILE GLU PHE ALA PRO GLU ILE ASN GLU THR GLU PRO PHE SEQRES 17 A 424 LYS PRO PHE SER TYR ARG TYR HIS VAL PRO TYR GLU ALA SEQRES 18 A 424 SER GLN SER THR SER PRO PHE TRP TYR SER ILE LYS ARG SEQRES 19 A 424 ALA SER ALA HIS ILE ILE VAL LEU SER SER TYR SER ALA SEQRES 20 A 424 TYR GLY ARG GLY THR PRO GLN TYR THR TRP LEU LYS LYS SEQRES 21 A 424 GLU LEU ARG LYS VAL LYS ARG SER GLU THR PRO TRP LEU SEQRES 22 A 424 ILE VAL LEU MET HIS SER PRO LEU TYR ASN SER TYR ASN SEQRES 23 A 424 HIS HIS PHE MET GLU GLY GLU ALA MET ARG THR LYS PHE SEQRES 24 A 424 GLU ALA TRP PHE VAL LYS TYR LYS VAL ASP VAL VAL PHE SEQRES 25 A 424 ALA GLY HIS VAL HIS ALA TYR GLU ARG SER GLU ARG VAL SEQRES 26 A 424 SER ASN ILE ALA TYR LYS ILE THR ASN GLY LEU CYS THR SEQRES 27 A 424 PRO VAL LYS ASP GLN SER ALA PRO VAL TYR ILE THR ILE SEQRES 28 A 424 GLY ASP ALA GLY ASN TYR GLY VAL ILE ASP SER ASN MET SEQRES 29 A 424 ILE GLN PRO GLN PRO GLU TYR SER ALA PHE ARG GLU ALA SEQRES 30 A 424 SER PHE GLY HIS GLY MET PHE ASP ILE LYS ASN ARG THR SEQRES 31 A 424 HIS ALA HIS PHE SER TRP ASN ARG ASN GLN ASP GLY VAL SEQRES 32 A 424 ALA VAL GLU ALA ASP SER VAL TRP PHE PHE ASN ARG HIS SEQRES 33 A 424 TRP TYR PRO VAL ASP ASP SER THR SEQRES 1 B 424 ARG ASP MET PRO LEU ASP SER ASP VAL PHE ARG VAL PRO SEQRES 2 B 424 PRO GLY TYR ASN ALA PRO GLN GLN VAL HIS ILE THR GLN SEQRES 3 B 424 GLY ASP LEU VAL GLY ARG ALA MET ILE ILE SER TRP VAL SEQRES 4 B 424 THR MET ASP GLU PRO GLY SER SER ALA VAL ARG TYR TRP SEQRES 5 B 424 SER GLU LYS ASN GLY ARG LYS ARG ILE ALA LYS GLY LYS SEQRES 6 B 424 MET SER THR TYR ARG PHE PHE ASN TYR SER SER GLY PHE SEQRES 7 B 424 ILE HIS HIS THR THR ILE ARG LYS LEU LYS TYR ASN THR SEQRES 8 B 424 LYS TYR TYR TYR GLU VAL GLY LEU ARG ASN THR THR ARG SEQRES 9 B 424 ARG PHE SER PHE ILE THR PRO PRO GLN THR GLY LEU ASP SEQRES 10 B 424 VAL PRO TYR THR PHE GLY LEU ILE GLY ASP LEU GLY GLN SEQRES 11 B 424 SER PHE ASP SER ASN THR THR LEU SER HIS TYR GLU LEU SEQRES 12 B 424 SER PRO LYS LYS GLY GLN THR VAL LEU PHE VAL GLY ASP SEQRES 13 B 424 LEU SER TYR ALA ASP ARG TYR PRO ASN HIS ASP ASN VAL SEQRES 14 B 424 ARG TRP ASP THR TRP GLY ARG PHE THR GLU ARG SER VAL SEQRES 15 B 424 ALA TYR GLN PRO TRP ILE TRP THR ALA GLY ASN HIS GLU SEQRES 16 B 424 ILE GLU PHE ALA PRO GLU ILE ASN GLU THR GLU PRO PHE SEQRES 17 B 424 LYS PRO PHE SER TYR ARG TYR HIS VAL PRO TYR GLU ALA SEQRES 18 B 424 SER GLN SER THR SER PRO PHE TRP TYR SER ILE LYS ARG SEQRES 19 B 424 ALA SER ALA HIS ILE ILE VAL LEU SER SER TYR SER ALA SEQRES 20 B 424 TYR GLY ARG GLY THR PRO GLN TYR THR TRP LEU LYS LYS SEQRES 21 B 424 GLU LEU ARG LYS VAL LYS ARG SER GLU THR PRO TRP LEU SEQRES 22 B 424 ILE VAL LEU MET HIS SER PRO LEU TYR ASN SER TYR ASN SEQRES 23 B 424 HIS HIS PHE MET GLU GLY GLU ALA MET ARG THR LYS PHE SEQRES 24 B 424 GLU ALA TRP PHE VAL LYS TYR LYS VAL ASP VAL VAL PHE SEQRES 25 B 424 ALA GLY HIS VAL HIS ALA TYR GLU ARG SER GLU ARG VAL SEQRES 26 B 424 SER ASN ILE ALA TYR LYS ILE THR ASN GLY LEU CYS THR SEQRES 27 B 424 PRO VAL LYS ASP GLN SER ALA PRO VAL TYR ILE THR ILE SEQRES 28 B 424 GLY ASP ALA GLY ASN TYR GLY VAL ILE ASP SER ASN MET SEQRES 29 B 424 ILE GLN PRO GLN PRO GLU TYR SER ALA PHE ARG GLU ALA SEQRES 30 B 424 SER PHE GLY HIS GLY MET PHE ASP ILE LYS ASN ARG THR SEQRES 31 B 424 HIS ALA HIS PHE SER TRP ASN ARG ASN GLN ASP GLY VAL SEQRES 32 B 424 ALA VAL GLU ALA ASP SER VAL TRP PHE PHE ASN ARG HIS SEQRES 33 B 424 TRP TYR PRO VAL ASP ASP SER THR MODRES 2QFR ASN A 143 ASN GLYCOSYLATION SITE MODRES 2QFR ASN A 396 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 81 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 109 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 143 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 396 ASN GLYCOSYLATION SITE HET FE A 433 1 HET ZN A 434 1 HET SO4 A 435 5 HET SO4 A 437 5 HET NDG A 450 15 HET NAG A 451 14 HET NAG A 452 14 HET NDG A 453 15 HET FE B 433 1 HET ZN B 434 1 HET SO4 B 435 5 HET SO4 B 437 5 HET NAG B 450 14 HET NAG B 451 14 HET NAG B 452 14 HET NAG B 453 14 HETNAM FE FE (III) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 FE 2(FE 3+) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 NDG 2(C8 H15 N O6) FORMUL 8 NAG 6(C8 H15 N O6) FORMUL 19 HOH *401(H2 O) HELIX 1 1 SER A 15 ARG A 19 5 5 HELIX 2 2 SER A 139 SER A 152 1 14 HELIX 3 3 TYR A 167 ASP A 175 5 9 HELIX 4 4 ASN A 176 ALA A 191 1 16 HELIX 5 5 GLY A 200 ILE A 204 5 5 HELIX 6 6 ALA A 207 ASN A 211 5 5 HELIX 7 7 PHE A 216 TYR A 223 1 8 HELIX 8 8 PRO A 226 GLN A 231 5 6 HELIX 9 9 THR A 260 LYS A 272 1 13 HELIX 10 10 GLY A 300 TYR A 314 1 15 HELIX 11 11 SER B 15 ARG B 19 5 5 HELIX 12 12 SER B 139 SER B 152 1 14 HELIX 13 13 TYR B 167 ASP B 175 5 9 HELIX 14 14 ASN B 176 ALA B 191 1 16 HELIX 15 15 GLY B 200 GLU B 205 1 6 HELIX 16 16 ALA B 207 ASN B 211 5 5 HELIX 17 17 PHE B 216 TYR B 223 1 8 HELIX 18 18 PRO B 226 GLN B 231 5 6 HELIX 19 19 THR B 260 LYS B 272 1 13 HELIX 20 20 GLY B 300 TYR B 314 1 15 SHEET 1 A 4 GLN A 28 GLN A 34 0 SHEET 2 A 4 MET A 42 THR A 48 -1 O ILE A 43 N THR A 33 SHEET 3 A 4 PHE A 86 ILE A 92 -1 O THR A 90 N ILE A 44 SHEET 4 A 4 LYS A 73 SER A 75 -1 N SER A 75 O ILE A 87 SHEET 1 B 4 ARG A 68 LYS A 71 0 SHEET 2 B 4 ALA A 56 SER A 61 -1 N TYR A 59 O ARG A 68 SHEET 3 B 4 LYS A 100 VAL A 105 -1 O TYR A 102 N TRP A 60 SHEET 4 B 4 ARG A 112 ILE A 117 -1 O PHE A 116 N TYR A 101 SHEET 1 C 6 TRP A 195 TRP A 197 0 SHEET 2 C 6 THR A 158 PHE A 161 1 N VAL A 159 O ILE A 196 SHEET 3 C 6 TYR A 128 ILE A 133 1 N GLY A 131 O THR A 158 SHEET 4 C 6 GLY A 388 ILE A 394 -1 O ILE A 394 N TYR A 128 SHEET 5 C 6 HIS A 399 ARG A 406 -1 O HIS A 401 N ASP A 393 SHEET 6 C 6 ASP A 416 PHE A 421 -1 O PHE A 420 N ALA A 400 SHEET 1 D 7 TYR A 238 ARG A 242 0 SHEET 2 D 7 ALA A 245 VAL A 249 -1 O VAL A 249 N TYR A 238 SHEET 3 D 7 TRP A 280 LEU A 284 1 O LEU A 284 N ILE A 248 SHEET 4 D 7 VAL A 318 ALA A 321 1 O PHE A 320 N VAL A 283 SHEET 5 D 7 VAL A 355 ILE A 359 1 O ILE A 357 N VAL A 319 SHEET 6 D 7 TYR A 327 SER A 330 -1 N SER A 330 O TYR A 356 SHEET 7 D 7 SER A 380 GLU A 384 -1 O PHE A 382 N ARG A 329 SHEET 1 E 2 VAL A 333 SER A 334 0 SHEET 2 E 2 VAL A 348 LYS A 349 -1 O VAL A 348 N SER A 334 SHEET 1 F 4 GLN B 28 GLN B 34 0 SHEET 2 F 4 MET B 42 THR B 48 -1 O ILE B 43 N THR B 33 SHEET 3 F 4 PHE B 86 ILE B 92 -1 O THR B 90 N ILE B 44 SHEET 4 F 4 LYS B 73 SER B 75 -1 N SER B 75 O ILE B 87 SHEET 1 G 4 ARG B 68 LYS B 71 0 SHEET 2 G 4 ALA B 56 SER B 61 -1 N TYR B 59 O ARG B 68 SHEET 3 G 4 LYS B 100 VAL B 105 -1 O GLU B 104 N ARG B 58 SHEET 4 G 4 ARG B 112 ILE B 117 -1 O PHE B 116 N TYR B 101 SHEET 1 H 6 TRP B 195 ILE B 196 0 SHEET 2 H 6 THR B 158 PHE B 161 1 N VAL B 159 O ILE B 196 SHEET 3 H 6 TYR B 128 ILE B 133 1 N GLY B 131 O THR B 158 SHEET 4 H 6 GLY B 388 ILE B 394 -1 O PHE B 392 N PHE B 130 SHEET 5 H 6 HIS B 399 ARG B 406 -1 O HIS B 401 N ASP B 393 SHEET 6 H 6 ASP B 416 PHE B 421 -1 O PHE B 420 N ALA B 400 SHEET 1 I 7 TYR B 238 ARG B 242 0 SHEET 2 I 7 ALA B 245 VAL B 249 -1 O VAL B 249 N TYR B 238 SHEET 3 I 7 TRP B 280 LEU B 284 1 O LEU B 284 N ILE B 248 SHEET 4 I 7 VAL B 318 ALA B 321 1 O PHE B 320 N VAL B 283 SHEET 5 I 7 VAL B 355 ILE B 359 1 O ILE B 359 N ALA B 321 SHEET 6 I 7 TYR B 327 SER B 330 -1 N SER B 330 O TYR B 356 SHEET 7 I 7 SER B 380 GLU B 384 -1 O PHE B 382 N ARG B 329 SHEET 1 J 2 VAL B 333 SER B 334 0 SHEET 2 J 2 VAL B 348 LYS B 349 -1 O VAL B 348 N SER B 334 SSBOND 1 CYS A 345 CYS B 345 1555 1555 2.03 LINK ND2 ASN A 143 C1 NAG A 451 1555 1555 1.45 LINK ND2 ASN A 396 C1 NAG A 452 1555 1555 1.46 LINK ND2 ASN B 81 C1 NAG B 450 1555 1555 1.45 LINK ND2 ASN B 109 C1 NAG B 453 1555 1555 1.45 LINK ND2 ASN B 143 C1 NAG B 451 1555 1555 1.45 LINK ND2 ASN B 396 C1 NAG B 452 1555 1555 1.46 LINK OD2 ASP A 135 FE FE A 433 1555 1555 1.83 LINK OD2 ASP A 164 FE FE A 433 1555 1555 2.07 LINK OD2 ASP A 164 ZN ZN A 434 1555 1555 2.35 LINK OH TYR A 167 FE FE A 433 1555 1555 2.00 LINK OD1 ASN A 201 ZN ZN A 434 1555 1555 2.01 LINK NE2 HIS A 286 ZN ZN A 434 1555 1555 2.04 LINK ND1 HIS A 323 ZN ZN A 434 1555 1555 2.09 LINK NE2 HIS A 325 FE FE A 433 1555 1555 2.36 LINK FE FE A 433 O HOH A 454 1555 1555 2.21 LINK ZN ZN A 434 O HOH A 454 1555 1555 2.37 LINK OD2 ASP B 135 FE FE B 433 1555 1555 1.85 LINK OD2 ASP B 164 FE FE B 433 1555 1555 2.16 LINK OD2 ASP B 164 ZN ZN B 434 1555 1555 2.23 LINK OH TYR B 167 FE FE B 433 1555 1555 1.91 LINK OD1 ASN B 201 ZN ZN B 434 1555 1555 2.13 LINK NE2 HIS B 286 ZN ZN B 434 1555 1555 2.02 LINK ND1 HIS B 323 ZN ZN B 434 1555 1555 2.07 LINK NE2 HIS B 325 FE FE B 433 1555 1555 2.25 LINK FE FE B 433 O HOH B 454 1555 1555 2.05 LINK ZN ZN B 434 O HOH B 454 1555 1555 2.26 CISPEP 1 GLN A 374 PRO A 375 0 -1.23 CISPEP 2 GLN B 374 PRO B 375 0 0.00 CRYST1 148.030 148.030 160.090 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006246 0.00000 MASTER 365 0 16 20 46 0 0 6 0 0 0 66 END