HEADER HYDROLASE 25-JUN-07 2QE9 TITLE CRYSTAL STRUCTURE OF A PUTATIVE METAL-DEPENDENT HYDROLASE (YIZA, TITLE 2 BSU10800) FROM BACILLUS SUBTILIS AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YIZA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YP_054576.1, YIZA, YUCC, BSU10800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DINB/YFIT-LIKE PUTATIVE METALLOENZYMES FOLD, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 24-JUL-19 2QE9 1 REMARK LINK REVDAT 6 25-OCT-17 2QE9 1 REMARK REVDAT 5 18-OCT-17 2QE9 1 REMARK REVDAT 4 13-JUL-11 2QE9 1 VERSN REVDAT 3 23-MAR-11 2QE9 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QE9 1 VERSN REVDAT 1 10-JUL-07 2QE9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN BSU10800 JRNL TITL 2 (YP_054576.1) FROM BACILLUS SUBTILIS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : 2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2853 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1855 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3886 ; 1.429 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4495 ; 1.310 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 3.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.149 ;23.514 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;10.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.224 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3158 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 625 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 630 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1860 ; 0.139 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1377 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1322 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1724 ; 1.733 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 665 ; 0.424 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2658 ; 2.608 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 4.402 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1224 ; 5.670 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -11 A 93 REMARK 3 RESIDUE RANGE : A 100 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6380 17.6510 11.8310 REMARK 3 T TENSOR REMARK 3 T11: -0.1418 T22: -0.0883 REMARK 3 T33: -0.2760 T12: 0.0611 REMARK 3 T13: 0.0159 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.9003 L22: 2.6665 REMARK 3 L33: 1.8746 L12: -0.8740 REMARK 3 L13: 0.0972 L23: -0.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.3449 S13: 0.0160 REMARK 3 S21: -0.2775 S22: -0.2076 S23: -0.1769 REMARK 3 S31: 0.0833 S32: 0.1811 S33: 0.0730 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0890 24.3140 22.2650 REMARK 3 T TENSOR REMARK 3 T11: -0.1604 T22: -0.1410 REMARK 3 T33: -0.1630 T12: 0.0216 REMARK 3 T13: 0.0228 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.0169 L22: 2.1154 REMARK 3 L33: 1.7709 L12: 0.5682 REMARK 3 L13: 0.7184 L23: 0.4827 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0234 S13: 0.0525 REMARK 3 S21: 0.0816 S22: -0.0829 S23: 0.3351 REMARK 3 S31: -0.0101 S32: -0.2533 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 94-99 IN CHAIN A AND 152-159 IN CHAIN REMARK 3 B ARE DISORDERED AND NOT INCLUDED IN THE MODEL. REMARK 3 4. NI ION IS MODELED BASED ON METAL EXCITATION SCAN. REMARK 3 5. CITRATE ION AND ETHYLENE GLYCOL FROM THE CRYSTALLIZATION/CRYO REMARK 3 SOLUTIONS ARE MODELED. REMARK 3 6. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 7. RAMACHANDRAN OUTLIER RESIDUE -7 IN CHAIN A LIES IN A REMARK 3 DISORDERED REGION. REMARK 3 8. 36 UNUSUALLY STRONG REFLECTIONS WERE OMITTED FROM THE FINAL REMARK 3 REFINEMENT. REMARK 4 REMARK 4 2QE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.761 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : 0.92000 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NACL, 10.0% PEG 3000, REMARK 280 0.1M PHOSPHATE CITRATE PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.68200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.59200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.84100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.59200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 188.52300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.59200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.84100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.59200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 188.52300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.68200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF REMARK 300 A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 SER A 94 REMARK 465 ASP A 95 REMARK 465 GLN A 96 REMARK 465 ILE A 97 REMARK 465 LYS A 98 REMARK 465 ASP A 99 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 THR B 152 REMARK 465 LEU B 153 REMARK 465 LYS B 154 REMARK 465 PRO B 155 REMARK 465 ILE B 156 REMARK 465 HIS B 157 REMARK 465 SER B 158 REMARK 465 TYR B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -8 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A -6 CG CD OE1 OE2 REMARK 470 GLN A -1 CD OE1 NE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 29 CE NZ REMARK 470 ILE A 62 CG1 CG2 CD1 REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 140 CD CE NZ REMARK 470 GLU B 25 CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ILE B 62 CG1 CG2 CD1 REMARK 470 LYS B 76 CD CE NZ REMARK 470 LYS B 140 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -8 -70.87 -86.95 REMARK 500 HIS A -7 124.88 70.07 REMARK 500 GLU A 36 -16.28 71.77 REMARK 500 GLU B 36 -30.59 71.55 REMARK 500 ASP B 61 -78.28 -56.33 REMARK 500 ILE B 62 85.82 58.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 NE2 REMARK 620 2 HIS A 124 NE2 91.4 REMARK 620 3 HIS A 128 NE2 97.0 97.2 REMARK 620 4 CIT A 201 O7 92.1 171.7 89.7 REMARK 620 5 CIT A 201 O1 169.4 97.2 88.2 78.6 REMARK 620 6 CIT A 201 O5 87.6 92.2 169.3 80.4 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 NE2 REMARK 620 2 HIS B 124 NE2 93.5 REMARK 620 3 HIS B 128 NE2 97.2 94.1 REMARK 620 4 CIT B 201 O7 92.3 169.5 93.9 REMARK 620 5 CIT B 201 O1 172.0 94.6 82.8 79.7 REMARK 620 6 CIT B 201 O5 90.1 94.2 168.6 77.0 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374687 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 2QE9 A 1 159 UNP Q7WY73 YIZA_BACSU 1 159 DBREF 2QE9 B 1 159 UNP Q7WY73 YIZA_BACSU 1 159 SEQADV 2QE9 MSE A -18 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLY A -17 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 SER A -16 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 ASP A -15 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 LYS A -14 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 ILE A -13 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS A -12 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS A -11 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS A -10 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS A -9 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS A -8 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS A -7 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLU A -6 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 ASN A -5 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 LEU A -4 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 TYR A -3 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 PHE A -2 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLN A -1 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLY A 0 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 MSE A 1 UNP Q7WY73 MET 1 MODIFIED RESIDUE SEQADV 2QE9 MSE A 2 UNP Q7WY73 MET 2 MODIFIED RESIDUE SEQADV 2QE9 MSE B -18 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLY B -17 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 SER B -16 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 ASP B -15 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 LYS B -14 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 ILE B -13 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS B -12 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS B -11 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS B -10 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS B -9 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS B -8 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 HIS B -7 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLU B -6 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 ASN B -5 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 LEU B -4 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 TYR B -3 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 PHE B -2 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLN B -1 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 GLY B 0 UNP Q7WY73 LEADER SEQUENCE SEQADV 2QE9 MSE B 1 UNP Q7WY73 MET 1 MODIFIED RESIDUE SEQADV 2QE9 MSE B 2 UNP Q7WY73 MET 2 MODIFIED RESIDUE SEQRES 1 A 178 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 178 ASN LEU TYR PHE GLN GLY MSE MSE LYS PHE PHE GLU TYR SEQRES 3 A 178 ASN TRP GLN VAL ARG ASP GLN TRP PHE THR TRP CYS HIS SEQRES 4 A 178 GLN LEU THR THR GLU GLU LEU LEU LYS ASN ARG LEU GLY SEQRES 5 A 178 GLY VAL GLU ASN ILE LEU TYR THR LEU PHE HIS ILE ILE SEQRES 6 A 178 ASP VAL GLU TYR SER TRP ILE ARG ALA ILE GLN GLY LYS SEQRES 7 A 178 GLU ASP ILE ALA VAL GLN PHE ALA ASP TYR GLN THR LEU SEQRES 8 A 178 ASN LYS VAL LYS SER LEU SER ASN THR PHE ARG THR GLU SEQRES 9 A 178 ILE ILE ASP VAL LEU GLN THR HIS SER ASP GLN ILE LYS SEQRES 10 A 178 ASP GLU LEU VAL SER VAL PRO TRP GLU THR GLY VAL LEU SEQRES 11 A 178 TYR THR ARG ASP GLU ILE LEU HIS HIS ILE ILE ALA HIS SEQRES 12 A 178 GLU ILE HIS HIS ILE GLY GLN LEU SER VAL TRP ALA ARG SEQRES 13 A 178 GLU LEU LYS LEU SER PRO VAL SER ALA SER PHE ILE GLY SEQRES 14 A 178 ARG THR LEU LYS PRO ILE HIS SER TYR SEQRES 1 B 178 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 178 ASN LEU TYR PHE GLN GLY MSE MSE LYS PHE PHE GLU TYR SEQRES 3 B 178 ASN TRP GLN VAL ARG ASP GLN TRP PHE THR TRP CYS HIS SEQRES 4 B 178 GLN LEU THR THR GLU GLU LEU LEU LYS ASN ARG LEU GLY SEQRES 5 B 178 GLY VAL GLU ASN ILE LEU TYR THR LEU PHE HIS ILE ILE SEQRES 6 B 178 ASP VAL GLU TYR SER TRP ILE ARG ALA ILE GLN GLY LYS SEQRES 7 B 178 GLU ASP ILE ALA VAL GLN PHE ALA ASP TYR GLN THR LEU SEQRES 8 B 178 ASN LYS VAL LYS SER LEU SER ASN THR PHE ARG THR GLU SEQRES 9 B 178 ILE ILE ASP VAL LEU GLN THR HIS SER ASP GLN ILE LYS SEQRES 10 B 178 ASP GLU LEU VAL SER VAL PRO TRP GLU THR GLY VAL LEU SEQRES 11 B 178 TYR THR ARG ASP GLU ILE LEU HIS HIS ILE ILE ALA HIS SEQRES 12 B 178 GLU ILE HIS HIS ILE GLY GLN LEU SER VAL TRP ALA ARG SEQRES 13 B 178 GLU LEU LYS LEU SER PRO VAL SER ALA SER PHE ILE GLY SEQRES 14 B 178 ARG THR LEU LYS PRO ILE HIS SER TYR MODRES 2QE9 MSE A 1 MET SELENOMETHIONINE MODRES 2QE9 MSE A 2 MET SELENOMETHIONINE MODRES 2QE9 MSE B 1 MET SELENOMETHIONINE MODRES 2QE9 MSE B 2 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 2 8 HET MSE B 1 8 HET MSE B 2 8 HET NI A 200 1 HET CIT A 201 13 HET EDO A 202 4 HET NI B 200 1 HET CIT B 201 13 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 5 EDO C2 H6 O2 FORMUL 8 HOH *235(H2 O) HELIX 1 1 ASN A -5 CYS A 19 1 25 HELIX 2 2 HIS A 20 LEU A 22 5 3 HELIX 3 3 THR A 23 LYS A 29 1 7 HELIX 4 4 ASN A 37 GLY A 58 1 22 HELIX 5 5 GLN A 65 TYR A 69 5 5 HELIX 6 6 THR A 71 GLN A 91 1 21 HELIX 7 7 THR A 113 LEU A 139 1 27 HELIX 8 8 PRO A 155 TYR A 159 5 5 HELIX 9 9 ASN B -5 HIS B 20 1 26 HELIX 10 10 THR B 23 LYS B 29 1 7 HELIX 11 11 ASN B 37 GLY B 58 1 22 HELIX 12 12 GLN B 65 TYR B 69 5 5 HELIX 13 13 THR B 71 HIS B 93 1 23 HELIX 14 14 ARG B 114 LEU B 139 1 26 SHEET 1 A 2 VAL A 102 SER A 103 0 SHEET 2 A 2 LEU A 111 TYR A 112 -1 O TYR A 112 N VAL A 102 SHEET 1 B 2 LEU B 101 SER B 103 0 SHEET 2 B 2 LEU B 111 THR B 113 -1 O TYR B 112 N VAL B 102 LINK NE2 HIS A 44 NI NI A 200 1555 1555 2.11 LINK NE2 HIS A 124 NI NI A 200 1555 1555 2.19 LINK NE2 HIS A 128 NI NI A 200 1555 1555 2.18 LINK NE2 HIS B 44 NI NI B 200 1555 1555 2.09 LINK NE2 HIS B 124 NI NI B 200 1555 1555 2.13 LINK NE2 HIS B 128 NI NI B 200 1555 1555 2.12 LINK NI NI A 200 O7 CIT A 201 1555 1555 2.19 LINK NI NI A 200 O1 CIT A 201 1555 1555 2.11 LINK NI NI A 200 O5 CIT A 201 1555 1555 2.15 LINK NI NI B 200 O7 CIT B 201 1555 1555 2.13 LINK NI NI B 200 O1 CIT B 201 1555 1555 2.10 LINK NI NI B 200 O5 CIT B 201 1555 1555 2.16 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N MSE A 2 1555 1555 1.34 LINK C MSE A 2 N LYS A 3 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N MSE B 2 1555 1555 1.33 LINK C MSE B 2 N LYS B 3 1555 1555 1.34 SITE 1 AC1 4 HIS A 44 HIS A 124 HIS A 128 CIT A 201 SITE 1 AC2 4 HIS B 44 HIS B 124 HIS B 128 CIT B 201 SITE 1 AC3 8 VAL A 35 HIS A 44 HIS A 124 HIS A 128 SITE 2 AC3 8 NI A 200 HOH A 274 HOH A 299 HOH A 300 SITE 1 AC4 9 EDO A 202 VAL B 35 HIS B 44 HIS B 124 SITE 2 AC4 9 HIS B 127 HIS B 128 NI B 200 HOH B 290 SITE 3 AC4 9 HOH B 312 SITE 1 AC5 6 ALA A 146 SER A 147 PHE A 148 HIS B 120 SITE 2 AC5 6 HIS B 124 CIT B 201 CRYST1 53.184 53.184 251.364 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003978 0.00000 MASTER 444 0 9 14 4 0 9 6 0 0 0 28 END