HEADER TRANSFERASE 19-JUN-07 2QCV TITLE CRYSTAL STRUCTURE OF A PUTATIVE 5-DEHYDRO-2-DEOXYGLUCONOKINASE (IOLC) TITLE 2 FROM BACILLUS HALODURANS C-125 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 5-DEHYDRO-2-DEOXYGLUCONOKINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS C-125; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125, DSM 18197, FERM 7344, JCM 9153; SOURCE 5 ATCC: BAA-125; SOURCE 6 GENE: NP_243185.1, IOLC, BH2319; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE 5-DEHYDRO-2- DEOXYGLUCONOKINASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 24-JUL-19 2QCV 1 REMARK LINK REVDAT 6 25-OCT-17 2QCV 1 REMARK REVDAT 5 18-OCT-17 2QCV 1 REMARK REVDAT 4 13-JUL-11 2QCV 1 VERSN REVDAT 3 28-JUL-10 2QCV 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2QCV 1 VERSN REVDAT 1 07-AUG-07 2QCV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE JRNL TITL 2 5-DEHYDRO-2-DEOXYGLUCONOKINASE (NP_243185.1) FROM BACILLUS JRNL TITL 3 HALODURANS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : -0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2707 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1856 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3664 ; 1.543 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4546 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 5.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.727 ;24.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;13.232 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3006 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 545 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 500 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1940 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1310 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1410 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 2.210 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 690 ; 0.544 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2719 ; 2.946 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 5.640 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 934 ; 7.413 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 77.1020 22.0710 0.8500 REMARK 3 T TENSOR REMARK 3 T11: -0.0465 T22: -0.1124 REMARK 3 T33: -0.0515 T12: 0.0241 REMARK 3 T13: -0.0198 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.4431 L22: 0.6944 REMARK 3 L33: 0.3109 L12: -0.2363 REMARK 3 L13: -0.2112 L23: 0.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.0184 S13: -0.0330 REMARK 3 S21: -0.0238 S22: 0.0216 S23: 0.1123 REMARK 3 S31: 0.0034 S32: -0.0247 S33: 0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. PGE WERE MODELED AS FRAGMENTS OF PEG-200 FROM THE REMARK 3 CRYSTALLIZATION CONDITIONS. REMARK 3 5. RESIDUES 1 AND 306-310 HAVE POOR DENSITY AND WERE NOT REMARK 3 MODELED. REMARK 3 6. THERE ARE NUMEROUS SMALL BLOBS OF DIFFERENCE DENSITY REMARK 3 THAT WERE NOT MODELED. REMARK 4 REMARK 4 2QCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : 0.67100 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MGCL2, 50.0% PEG 200, REMARK 280 0.1M CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.02767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.05533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.02767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.05533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 16.02767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.05533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.02767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.05533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A TETRAMER AS A SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 194.00100 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 194.00100 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 HIS A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 SER A 309 REMARK 465 ASP A 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CD CE NZ REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 ARG A 178 CZ NH1 NH2 REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 ARG A 226 NE CZ NH1 NH2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU A 323 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 8 OH TYR A 255 12554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 231 -151.55 -120.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375195 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QCV A 1 331 UNP Q9KAG8 Q9KAG8_BACHD 1 331 SEQADV 2QCV GLY A 0 UNP Q9KAG8 LEADER SEQUENCE SEQADV 2QCV MSE A 1 UNP Q9KAG8 MET 1 MODIFIED RESIDUE SEQADV 2QCV MSE A 32 UNP Q9KAG8 MET 32 MODIFIED RESIDUE SEQADV 2QCV MSE A 36 UNP Q9KAG8 MET 36 MODIFIED RESIDUE SEQADV 2QCV MSE A 79 UNP Q9KAG8 MET 79 MODIFIED RESIDUE SEQADV 2QCV MSE A 115 UNP Q9KAG8 MET 115 MODIFIED RESIDUE SEQADV 2QCV MSE A 312 UNP Q9KAG8 MET 312 MODIFIED RESIDUE SEQRES 1 A 332 GLY MSE THR TYR GLU LEU SER THR ASP ARG GLU PHE ASP SEQRES 2 A 332 LEU ILE ALA ILE GLY ARG ALA CYS ILE ASP LEU ASN ALA SEQRES 3 A 332 VAL GLU TYR ASN ARG PRO MSE GLU GLU THR MSE THR PHE SEQRES 4 A 332 SER LYS TYR VAL GLY GLY SER PRO ALA ASN ILE VAL ILE SEQRES 5 A 332 GLY SER SER LYS LEU GLY LEU LYS ALA GLY PHE ILE GLY SEQRES 6 A 332 LYS ILE ALA ASP ASP GLN HIS GLY ARG PHE ILE GLU SER SEQRES 7 A 332 TYR MSE ARG GLY VAL GLY VAL ASP THR SER ASN LEU VAL SEQRES 8 A 332 VAL ASP GLN GLU GLY HIS LYS THR GLY LEU ALA PHE THR SEQRES 9 A 332 GLU ILE LYS SER PRO GLU GLU CYS SER ILE LEU MSE TYR SEQRES 10 A 332 ARG GLN ASP VAL ALA ASP LEU TYR LEU SER PRO GLU GLU SEQRES 11 A 332 VAL ASN GLU ALA TYR ILE ARG ARG SER LYS LEU LEU LEU SEQRES 12 A 332 VAL SER GLY THR ALA LEU SER LYS SER PRO SER ARG GLU SEQRES 13 A 332 ALA VAL LEU LYS ALA ILE ARG LEU ALA LYS ARG ASN ASP SEQRES 14 A 332 VAL LYS VAL VAL PHE GLU LEU ASP TYR ARG PRO TYR SER SEQRES 15 A 332 TRP GLU THR PRO GLU GLU THR ALA VAL TYR TYR SER LEU SEQRES 16 A 332 VAL ALA GLU GLN SER ASP ILE VAL ILE GLY THR ARG GLU SEQRES 17 A 332 GLU PHE ASP VAL LEU GLU ASN ARG THR GLU LYS GLY ASP SEQRES 18 A 332 ASN ASP GLU THR ILE ARG TYR LEU PHE LYS HIS SER PRO SEQRES 19 A 332 GLU LEU ILE VAL ILE LYS HIS GLY VAL GLU GLY SER PHE SEQRES 20 A 332 ALA TYR THR LYS ALA GLY GLU ALA TYR ARG GLY TYR ALA SEQRES 21 A 332 TYR LYS THR LYS VAL LEU LYS THR PHE GLY ALA GLY ASP SEQRES 22 A 332 SER TYR ALA SER ALA PHE LEU TYR ALA LEU ILE SER GLY SEQRES 23 A 332 LYS GLY ILE GLU THR ALA LEU LYS TYR GLY SER ALA SER SEQRES 24 A 332 ALA SER ILE VAL VAL SER LYS HIS SER SER SER ASP ALA SEQRES 25 A 332 MSE PRO SER VAL GLU GLU ILE GLU ALA LEU ILE GLU LYS SEQRES 26 A 332 ASP GLU THR ILE THR ILE ALA MODRES 2QCV MSE A 32 MET SELENOMETHIONINE MODRES 2QCV MSE A 36 MET SELENOMETHIONINE MODRES 2QCV MSE A 79 MET SELENOMETHIONINE MODRES 2QCV MSE A 115 MET SELENOMETHIONINE MODRES 2QCV MSE A 312 MET SELENOMETHIONINE HET MSE A 32 8 HET MSE A 36 8 HET MSE A 79 8 HET MSE A 115 8 HET MSE A 312 8 HET PGE A 332 20 HET PGE A 333 10 HETNAM MSE SELENOMETHIONINE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 PGE 2(C6 H14 O4) FORMUL 4 HOH *221(H2 O) HELIX 1 1 PRO A 31 THR A 35 5 5 HELIX 2 2 GLY A 44 LEU A 56 1 13 HELIX 3 3 ASP A 69 VAL A 82 1 14 HELIX 4 4 VAL A 120 LEU A 125 5 6 HELIX 5 5 SER A 126 VAL A 130 5 5 HELIX 6 6 ASN A 131 ARG A 136 1 6 HELIX 7 7 THR A 146 SER A 149 5 4 HELIX 8 8 PRO A 152 ASN A 167 1 16 HELIX 9 9 ARG A 178 TRP A 182 5 5 HELIX 10 10 THR A 184 SER A 199 1 16 HELIX 11 11 ARG A 206 GLU A 213 1 8 HELIX 12 12 ASP A 220 PHE A 229 1 10 HELIX 13 13 GLY A 241 GLU A 243 5 3 HELIX 14 14 GLY A 269 SER A 284 1 16 HELIX 15 15 GLY A 287 LYS A 305 1 19 HELIX 16 16 SER A 314 ASP A 325 1 12 SHEET 1 A 9 LEU A 89 VAL A 91 0 SHEET 2 A 9 ALA A 60 ILE A 66 1 N GLY A 64 O VAL A 90 SHEET 3 A 9 PHE A 11 ILE A 16 1 N ALA A 15 O ILE A 63 SHEET 4 A 9 SER A 138 SER A 144 1 O LEU A 142 N ILE A 14 SHEET 5 A 9 LYS A 170 GLU A 174 1 O VAL A 172 N LEU A 141 SHEET 6 A 9 ILE A 201 THR A 205 1 O ILE A 201 N PHE A 173 SHEET 7 A 9 LEU A 235 LYS A 239 1 O VAL A 237 N VAL A 202 SHEET 8 A 9 SER A 245 THR A 249 -1 O PHE A 246 N ILE A 238 SHEET 9 A 9 ALA A 254 GLY A 257 -1 O GLY A 257 N SER A 245 SHEET 1 B 4 PHE A 38 GLY A 43 0 SHEET 2 B 4 CYS A 20 ALA A 25 -1 N ASP A 22 O TYR A 41 SHEET 3 B 4 LEU A 100 SER A 107 1 O ALA A 101 N LEU A 23 SHEET 4 B 4 GLU A 110 TYR A 116 -1 O SER A 112 N GLU A 104 LINK C PRO A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N GLU A 33 1555 1555 1.33 LINK C THR A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N THR A 37 1555 1555 1.34 LINK C TYR A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N ARG A 80 1555 1555 1.33 LINK C LEU A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N TYR A 116 1555 1555 1.33 LINK C ALA A 311 N MSE A 312 1555 1555 1.33 LINK C MSE A 312 N PRO A 313 1555 1555 1.35 CISPEP 1 SER A 151 PRO A 152 0 0.59 SITE 1 AC1 11 GLU A 174 ASP A 176 THR A 205 GLU A 208 SITE 2 AC1 11 LYS A 239 ALA A 270 GLY A 271 ASP A 272 SITE 3 AC1 11 TYR A 274 ALA A 299 HOH A 442 SITE 1 AC2 9 LYS A 159 ARG A 162 GLU A 186 SER A 193 SITE 2 AC2 9 LEU A 212 ASN A 214 TYR A 227 HOH A 382 SITE 3 AC2 9 HOH A 440 CRYST1 194.001 194.001 48.083 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005155 0.002976 0.000000 0.00000 SCALE2 0.000000 0.005952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020797 0.00000 MASTER 420 0 7 16 13 0 6 6 0 0 0 26 END