HEADER HYDROLASE 16-JUN-07 2QB6 TITLE SACCHAROMYCES CEREVISIAE CYTOSOLIC EXOPOLYPHOSPHATASE, SULFATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOPOLYPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXOPOLYPASE, METAPHOSPHATASE; COMPND 5 EC: 3.6.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 ATCC: 204511; SOURCE 7 GENE: PPX1, YHR201C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS A/B/A STRUCTURE, DHH FAMILY PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.WHITE,E.UGOCHUKWU REVDAT 3 13-JUL-11 2QB6 1 VERSN REVDAT 2 24-FEB-09 2QB6 1 VERSN REVDAT 1 11-DEC-07 2QB6 0 JRNL AUTH E.UGOCHUKWU,A.L.LOVERING,O.C.MATHER,T.W.YOUNG,S.A.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF THE CYTOSOLIC EXOPOLYPHOSPHATASE JRNL TITL 2 FROM SACCHAROMYCES CEREVISIAE REVEALS THE BASIS FOR JRNL TITL 3 SUBSTRATE SPECIFICITY. JRNL REF J.MOL.BIOL. V. 371 1007 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17599355 JRNL DOI 10.1016/J.JMB.2007.05.066 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 61666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6365 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5821 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8563 ; 1.467 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13594 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 778 ; 5.901 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;36.135 ;25.032 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1209 ;14.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;14.396 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 956 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7004 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1232 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1366 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6028 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3138 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3646 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 595 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 80 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5053 ; 1.220 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1596 ; 0.246 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6253 ; 1.365 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2860 ; 2.519 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2310 ; 3.534 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QB6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB043378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19400 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIS ENTRY HAS BEEN RELEASED WITHOUT DEPOSITOR'S CHECKING REMARK 200 AND CORRECTIONS, ONLY WITH NECESSARY PDB STAFF INTERVENTION. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 4000, 150 MM (NH4)2SO4, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.61400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.45700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.61400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.45700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 273 REMARK 465 GLY B 274 REMARK 465 LYS B 275 REMARK 465 GLY B 276 REMARK 465 HIS B 277 REMARK 465 LYS B 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 EDO A 803 O HOH A 1213 1.66 REMARK 500 O HOH B 588 O HOH B 648 2.08 REMARK 500 O HOH B 647 O HOH B 696 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 239 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 250 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 64 -1.51 54.05 REMARK 500 ASP A 184 109.67 -41.65 REMARK 500 VAL B 229 -37.34 -132.55 REMARK 500 ASN B 230 21.93 39.41 REMARK 500 ASP B 266 84.05 -152.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 230 GLU B 231 144.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN B 230 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 959 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1155 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1180 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A1223 DISTANCE = 5.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASP A 127 OD1 98.2 REMARK 620 3 HOH A 948 O 118.1 89.8 REMARK 620 4 HOH A 939 O 83.6 172.9 83.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 41 OD2 REMARK 620 2 ASP B 127 OD1 99.8 REMARK 620 3 HOH B 577 O 84.0 173.3 REMARK 620 4 HOH B 578 O 124.4 86.6 86.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QB7 RELATED DB: PDB REMARK 900 SACCHAROMYCES CEREVISIAE CYTOSOLIC EXOPOLYPHOSPHATASE, REMARK 900 PHOSPHATE COMPLEX REMARK 900 RELATED ID: 2QB8 RELATED DB: PDB REMARK 900 SACCHAROMYCES CEREVISIAE CYTOSOLIC EXOPOLYPHOSPHATASE, ATP REMARK 900 COMPLEX DBREF 2QB6 A 1 397 UNP P38698 PPX1_YEAST 1 397 DBREF 2QB6 B 1 397 UNP P38698 PPX1_YEAST 1 397 SEQRES 1 A 397 MET SER PRO LEU ARG LYS THR VAL PRO GLU PHE LEU ALA SEQRES 2 A 397 HIS LEU LYS SER LEU PRO ILE SER LYS ILE ALA SER ASN SEQRES 3 A 397 ASP VAL LEU THR ILE CYS VAL GLY ASN GLU SER ALA ASP SEQRES 4 A 397 MET ASP SER ILE ALA SER ALA ILE THR TYR SER TYR CYS SEQRES 5 A 397 GLN TYR ILE TYR ASN GLU GLY THR TYR SER GLU GLU LYS SEQRES 6 A 397 LYS LYS GLY SER PHE ILE VAL PRO ILE ILE ASP ILE PRO SEQRES 7 A 397 ARG GLU ASP LEU SER LEU ARG ARG ASP VAL MET TYR VAL SEQRES 8 A 397 LEU GLU LYS LEU LYS ILE LYS GLU GLU GLU LEU PHE PHE SEQRES 9 A 397 ILE GLU ASP LEU LYS SER LEU LYS GLN ASN VAL SER GLN SEQRES 10 A 397 GLY THR GLU LEU ASN SER TYR LEU VAL ASP ASN ASN ASP SEQRES 11 A 397 THR PRO LYS ASN LEU LYS ASN TYR ILE ASP ASN VAL VAL SEQRES 12 A 397 GLY ILE ILE ASP HIS HIS PHE ASP LEU GLN LYS HIS LEU SEQRES 13 A 397 ASP ALA GLU PRO ARG ILE VAL LYS VAL SER GLY SER CYS SEQRES 14 A 397 SER SER LEU VAL PHE ASN TYR TRP TYR GLU LYS LEU GLN SEQRES 15 A 397 GLY ASP ARG GLU VAL VAL MET ASN ILE ALA PRO LEU LEU SEQRES 16 A 397 MET GLY ALA ILE LEU ILE ASP THR SER ASN MET ARG ARG SEQRES 17 A 397 LYS VAL GLU GLU SER ASP LYS LEU ALA ILE GLU ARG CYS SEQRES 18 A 397 GLN ALA VAL LEU SER GLY ALA VAL ASN GLU VAL SER ALA SEQRES 19 A 397 GLN GLY LEU GLU ASP SER SER GLU PHE TYR LYS GLU ILE SEQRES 20 A 397 LYS SER ARG LYS ASN ASP ILE LYS GLY PHE SER VAL SER SEQRES 21 A 397 ASP ILE LEU LYS LYS ASP TYR LYS GLN PHE ASN PHE GLN SEQRES 22 A 397 GLY LYS GLY HIS LYS GLY LEU GLU ILE GLY LEU SER SER SEQRES 23 A 397 ILE VAL LYS ARG MET SER TRP LEU PHE ASN GLU HIS GLY SEQRES 24 A 397 GLY GLU ALA ASP PHE VAL ASN GLN CYS ARG ARG PHE GLN SEQRES 25 A 397 ALA GLU ARG GLY LEU ASP VAL LEU VAL LEU LEU THR SER SEQRES 26 A 397 TRP ARG LYS ALA GLY ASP SER HIS ARG GLU LEU VAL ILE SEQRES 27 A 397 LEU GLY ASP SER ASN VAL VAL ARG GLU LEU ILE GLU ARG SEQRES 28 A 397 VAL SER ASP LYS LEU GLN LEU GLN LEU PHE GLY GLY ASN SEQRES 29 A 397 LEU ASP GLY GLY VAL ALA MET PHE LYS GLN LEU ASN VAL SEQRES 30 A 397 GLU ALA THR ARG LYS GLN VAL VAL PRO TYR LEU GLU GLU SEQRES 31 A 397 ALA TYR SER ASN LEU GLU GLU SEQRES 1 B 397 MET SER PRO LEU ARG LYS THR VAL PRO GLU PHE LEU ALA SEQRES 2 B 397 HIS LEU LYS SER LEU PRO ILE SER LYS ILE ALA SER ASN SEQRES 3 B 397 ASP VAL LEU THR ILE CYS VAL GLY ASN GLU SER ALA ASP SEQRES 4 B 397 MET ASP SER ILE ALA SER ALA ILE THR TYR SER TYR CYS SEQRES 5 B 397 GLN TYR ILE TYR ASN GLU GLY THR TYR SER GLU GLU LYS SEQRES 6 B 397 LYS LYS GLY SER PHE ILE VAL PRO ILE ILE ASP ILE PRO SEQRES 7 B 397 ARG GLU ASP LEU SER LEU ARG ARG ASP VAL MET TYR VAL SEQRES 8 B 397 LEU GLU LYS LEU LYS ILE LYS GLU GLU GLU LEU PHE PHE SEQRES 9 B 397 ILE GLU ASP LEU LYS SER LEU LYS GLN ASN VAL SER GLN SEQRES 10 B 397 GLY THR GLU LEU ASN SER TYR LEU VAL ASP ASN ASN ASP SEQRES 11 B 397 THR PRO LYS ASN LEU LYS ASN TYR ILE ASP ASN VAL VAL SEQRES 12 B 397 GLY ILE ILE ASP HIS HIS PHE ASP LEU GLN LYS HIS LEU SEQRES 13 B 397 ASP ALA GLU PRO ARG ILE VAL LYS VAL SER GLY SER CYS SEQRES 14 B 397 SER SER LEU VAL PHE ASN TYR TRP TYR GLU LYS LEU GLN SEQRES 15 B 397 GLY ASP ARG GLU VAL VAL MET ASN ILE ALA PRO LEU LEU SEQRES 16 B 397 MET GLY ALA ILE LEU ILE ASP THR SER ASN MET ARG ARG SEQRES 17 B 397 LYS VAL GLU GLU SER ASP LYS LEU ALA ILE GLU ARG CYS SEQRES 18 B 397 GLN ALA VAL LEU SER GLY ALA VAL ASN GLU VAL SER ALA SEQRES 19 B 397 GLN GLY LEU GLU ASP SER SER GLU PHE TYR LYS GLU ILE SEQRES 20 B 397 LYS SER ARG LYS ASN ASP ILE LYS GLY PHE SER VAL SER SEQRES 21 B 397 ASP ILE LEU LYS LYS ASP TYR LYS GLN PHE ASN PHE GLN SEQRES 22 B 397 GLY LYS GLY HIS LYS GLY LEU GLU ILE GLY LEU SER SER SEQRES 23 B 397 ILE VAL LYS ARG MET SER TRP LEU PHE ASN GLU HIS GLY SEQRES 24 B 397 GLY GLU ALA ASP PHE VAL ASN GLN CYS ARG ARG PHE GLN SEQRES 25 B 397 ALA GLU ARG GLY LEU ASP VAL LEU VAL LEU LEU THR SER SEQRES 26 B 397 TRP ARG LYS ALA GLY ASP SER HIS ARG GLU LEU VAL ILE SEQRES 27 B 397 LEU GLY ASP SER ASN VAL VAL ARG GLU LEU ILE GLU ARG SEQRES 28 B 397 VAL SER ASP LYS LEU GLN LEU GLN LEU PHE GLY GLY ASN SEQRES 29 B 397 LEU ASP GLY GLY VAL ALA MET PHE LYS GLN LEU ASN VAL SEQRES 30 B 397 GLU ALA THR ARG LYS GLN VAL VAL PRO TYR LEU GLU GLU SEQRES 31 B 397 ALA TYR SER ASN LEU GLU GLU HET MN A 401 1 HET MN B 401 1 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 B 501 5 HET ACT A 805 4 HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET GOL A 804 6 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 EDO 3(C2 H6 O2) FORMUL 12 GOL C3 H8 O3 FORMUL 13 HOH *788(H2 O) HELIX 1 1 THR A 7 LEU A 18 1 12 HELIX 2 2 PRO A 19 ALA A 24 1 6 HELIX 3 3 ASP A 39 GLY A 59 1 21 HELIX 4 4 PRO A 78 LEU A 84 5 7 HELIX 5 5 ARG A 85 LEU A 95 1 11 HELIX 6 6 LYS A 98 LEU A 102 5 5 HELIX 7 7 PHE A 104 VAL A 115 1 12 HELIX 8 8 PRO A 132 LYS A 136 5 5 HELIX 9 9 SER A 168 LEU A 181 1 14 HELIX 10 10 ASP A 184 THR A 203 1 20 HELIX 11 11 GLU A 211 GLY A 227 1 17 HELIX 12 12 ALA A 234 ASN A 252 1 19 HELIX 13 13 SER A 258 LYS A 265 1 8 HELIX 14 14 ARG A 290 HIS A 298 1 9 HELIX 15 15 GLY A 300 ARG A 315 1 16 HELIX 16 16 ASP A 341 GLN A 357 1 17 HELIX 17 17 LEU A 365 GLY A 367 5 3 HELIX 18 18 THR A 380 ASN A 394 1 15 HELIX 19 19 THR B 7 LEU B 18 1 12 HELIX 20 20 PRO B 19 ILE B 23 5 5 HELIX 21 21 ASP B 39 GLU B 58 1 20 HELIX 22 22 PRO B 78 LEU B 84 5 7 HELIX 23 23 ARG B 85 LEU B 95 1 11 HELIX 24 24 LYS B 98 LEU B 102 5 5 HELIX 25 25 PHE B 104 VAL B 115 1 12 HELIX 26 26 PRO B 132 LYS B 136 5 5 HELIX 27 27 SER B 168 LEU B 181 1 14 HELIX 28 28 ASP B 184 THR B 203 1 20 HELIX 29 29 GLU B 211 GLY B 227 1 17 HELIX 30 30 ALA B 234 ASN B 252 1 19 HELIX 31 31 SER B 258 LYS B 265 1 8 HELIX 32 32 ARG B 290 HIS B 298 1 9 HELIX 33 33 GLY B 300 ARG B 315 1 16 HELIX 34 34 ASP B 341 GLN B 357 1 17 HELIX 35 35 THR B 380 GLU B 397 1 18 SHEET 1 A 5 VAL A 72 ILE A 74 0 SHEET 2 A 5 VAL A 28 VAL A 33 1 N CYS A 32 O ILE A 74 SHEET 3 A 5 GLU A 120 VAL A 126 1 O GLU A 120 N LEU A 29 SHEET 4 A 5 ASN A 141 ASP A 147 1 O VAL A 143 N SER A 123 SHEET 5 A 5 ARG A 161 VAL A 163 1 O ILE A 162 N ILE A 145 SHEET 1 B 6 TYR A 267 PHE A 272 0 SHEET 2 B 6 LEU A 280 ILE A 287 -1 O ILE A 282 N PHE A 270 SHEET 3 B 6 VAL A 319 LYS A 328 1 O LEU A 323 N SER A 285 SHEET 4 B 6 ASP A 331 GLY A 340 -1 O VAL A 337 N LEU A 322 SHEET 5 B 6 VAL A 369 GLN A 374 -1 O PHE A 372 N LEU A 336 SHEET 6 B 6 LEU A 358 ASN A 364 -1 N PHE A 361 O MET A 371 SHEET 1 C 5 ILE B 71 ILE B 74 0 SHEET 2 C 5 VAL B 28 VAL B 33 1 N CYS B 32 O ILE B 74 SHEET 3 C 5 GLU B 120 VAL B 126 1 O GLU B 120 N LEU B 29 SHEET 4 C 5 ASN B 141 ASP B 147 1 O GLY B 144 N LEU B 125 SHEET 5 C 5 ARG B 161 VAL B 163 1 O ILE B 162 N ASP B 147 SHEET 1 D 6 TYR B 267 ASN B 271 0 SHEET 2 D 6 GLU B 281 ILE B 287 -1 O ILE B 282 N PHE B 270 SHEET 3 D 6 VAL B 319 LYS B 328 1 O LEU B 323 N SER B 285 SHEET 4 D 6 ASP B 331 GLY B 340 -1 O VAL B 337 N LEU B 322 SHEET 5 D 6 VAL B 369 GLN B 374 -1 O GLN B 374 N ARG B 334 SHEET 6 D 6 LEU B 358 ASN B 364 -1 N GLN B 359 O LYS B 373 LINK OD2 ASP A 41 MN MN A 401 1555 1555 2.12 LINK OD1 ASP A 127 MN MN A 401 1555 1555 2.17 LINK OD2 ASP B 41 MN MN B 401 1555 1555 2.09 LINK OD1 ASP B 127 MN MN B 401 1555 1555 2.14 LINK MN MN A 401 O HOH A 948 1555 1555 2.18 LINK MN MN A 401 O HOH A 939 1555 1555 2.14 LINK MN MN B 401 O HOH B 577 1555 1555 2.11 LINK MN MN B 401 O HOH B 578 1555 1555 2.33 CISPEP 1 GLU A 159 PRO A 160 0 -4.14 CISPEP 2 GLU B 159 PRO B 160 0 -3.42 SITE 1 AC1 5 ASP A 41 ASP A 127 HIS A 148 HOH A 939 SITE 2 AC1 5 HOH A 948 SITE 1 AC2 5 ASP B 41 ASP B 127 HIS B 148 HOH B 577 SITE 2 AC2 5 HOH B 578 SITE 1 AC3 8 HIS A 149 LYS A 268 ARG A 381 LYS A 382 SITE 2 AC3 8 EDO A 803 HOH A1051 HOH A1062 HOH A1211 SITE 1 AC4 10 SER A 258 SER A 260 HOH A 914 SER B 62 SITE 2 AC4 10 GLU B 63 GLU B 64 LYS B 66 HOH B 517 SITE 3 AC4 10 HOH B 686 HOH B 803 SITE 1 AC5 5 LYS B 268 ARG B 381 LYS B 382 HOH B 643 SITE 2 AC5 5 HOH B 790 SITE 1 AC6 5 GLU A 80 ASP A 81 LEU A 84 ASP A 261 SITE 2 AC6 5 LYS A 264 SITE 1 AC7 6 MET A 206 HOH A 821 HOH A 857 HOH A 862 SITE 2 AC7 6 HOH A 949 MET B 206 SITE 1 AC8 9 HIS A 148 HIS A 149 PHE A 150 VAL A 163 SITE 2 AC8 9 LYS A 164 VAL A 165 LYS A 382 HOH A 915 SITE 3 AC8 9 HOH A 997 SITE 1 AC9 7 HIS A 149 LYS A 382 SO4 A 501 HOH A 817 SITE 2 AC9 7 HOH A 986 HOH A1210 HOH A1213 SITE 1 BC1 9 SER A 204 ARG A 207 ARG A 208 TYR A 244 SITE 2 BC1 9 LYS A 248 ARG A 327 HOH A1079 HOH A1148 SITE 3 BC1 9 HOH A1242 CRYST1 79.660 82.914 119.228 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008387 0.00000 MASTER 431 0 10 35 22 0 23 6 0 0 0 62 END