HEADER UNKNOWN FUNCTION 13-JUN-07 2Q9R TITLE CRYSTAL STRUCTURE OF A DUF416 FAMILY PROTEIN (SBAL_3149) FROM TITLE 2 SHEWANELLA BALTICA OS155 AT 1.91 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA BALTICA; SOURCE 3 ORGANISM_TAXID: 325240; SOURCE 4 STRAIN: OS155; SOURCE 5 GENE: YP_001051499.1, SBAL_3149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 24-JUL-19 2Q9R 1 REMARK LINK REVDAT 6 25-OCT-17 2Q9R 1 REMARK REVDAT 5 18-OCT-17 2Q9R 1 REMARK REVDAT 4 13-JUL-11 2Q9R 1 VERSN REVDAT 3 28-JUL-10 2Q9R 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2Q9R 1 VERSN REVDAT 1 26-JUN-07 2Q9R 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (YP_001051499.1) FROM SHEWANELLA BALTICA OS155 AT 1.91 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.625 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1610 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1040 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2192 ; 1.456 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2577 ; 0.976 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 4.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;34.010 ;26.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;13.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;19.123 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1768 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 282 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 382 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1001 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 809 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 779 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 2.169 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 396 ; 0.547 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1621 ; 3.325 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 646 ; 5.987 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 565 ; 8.186 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5330 22.0860 -5.5180 REMARK 3 T TENSOR REMARK 3 T11: -0.0469 T22: -0.0491 REMARK 3 T33: -0.0173 T12: 0.0541 REMARK 3 T13: -0.0033 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 0.5927 L22: 1.2690 REMARK 3 L33: 1.3045 L12: 0.4534 REMARK 3 L13: 0.4909 L23: 0.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0737 S13: -0.0219 REMARK 3 S21: -0.0338 S22: -0.0143 S23: 0.0500 REMARK 3 S31: 0.1229 S32: 0.0715 S33: -0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. THE BENZOIC ACID (BEZ) MOLECULE IS ASSIGNED BASED ON THE REMARK 3 ELECTRON DENSITY AND ITS INTERACTION WITH THE PROTEIN. REMARK 3 IT COULD BE SOME RELATED COMPOUND WITH A SIMILAR STRUCTURE. REMARK 3 5. GOL, SO4 AND ACT ARE PRESENT IN CRYSTALLIZATION/CRYO BUFFER. REMARK 3 ACT SITS ON SPECIAL POSITION AND COULD BE A NOISE. REMARK 4 REMARK 4 2Q9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97922, 0.97905 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18196 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 29.062 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 2.4M (NH4)2SO4, 0.1M MES PH REMARK 280 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.28500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.28500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.58500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.28500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.57000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.58500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.28500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.57000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY AND SURFACE ANALYSIS REMARK 300 SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 77.14000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 202 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 263 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 64 CD CE NZ REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 ILE A 134 CD1 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS A 180 CE NZ REMARK 470 ALA A 199 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 154 CG - SE - CE ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 141 -132.62 56.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374572 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2Q9R A 1 199 UNP A3D7B7 A3D7B7_9GAMM 1 199 SEQADV 2Q9R GLY A 0 UNP A3D7B7 LEADER SEQUENCE SEQADV 2Q9R MSE A 1 UNP A3D7B7 MET 1 MODIFIED RESIDUE SEQADV 2Q9R MSE A 30 UNP A3D7B7 MET 30 MODIFIED RESIDUE SEQADV 2Q9R MSE A 95 UNP A3D7B7 MET 95 MODIFIED RESIDUE SEQADV 2Q9R MSE A 154 UNP A3D7B7 MET 154 MODIFIED RESIDUE SEQRES 1 A 200 GLY MSE THR LYS LYS THR GLY PHE PHE LYS ARG LEU LYS SEQRES 2 A 200 ALA LEU THR LEU PRO GLN LYS GLN LEU PHE ALA THR ALA SEQRES 3 A 200 LEU CYS GLN ARG MSE LEU PRO ASN TYR GLN LEU PHE SER SEQRES 4 A 200 GLU VAL CYS GLU PHE GLY ASP PRO ALA VAL LEU SER THR SEQRES 5 A 200 ALA LEU GLU LEU LEU TRP GLN SER LEU TYR ASP PRO LYS SEQRES 6 A 200 LEU LYS PHE ASN ILE ASP VAL HIS LEU GLN ARG LEU GLU SEQRES 7 A 200 ASP ASN THR PRO GLU PRO ALA ASP PHE GLU ALA TYR GLY SEQRES 8 A 200 VAL TYR PRO ALA MSE ASP ALA VAL VAL ALA ILE SER THR SEQRES 9 A 200 LEU LEU GLY ALA ILE GLN GLY LYS ILE GLU GLU ASP ILE SEQRES 10 A 200 VAL ASN ILE SER LYS LEU SER SER SER THR VAL ALA ASN SEQRES 11 A 200 TYR ILE GLU ALA ILE SER ASP VAL ASP LEU VAL ASP GLU SEQRES 12 A 200 ALA LEU ASP ASP PHE VAL PHE ALA HIS GLU VAL MSE GLU SEQRES 13 A 200 GLU GLU LYS GLU LEU GLN ASN SER LEU LEU GLU ILE ILE SEQRES 14 A 200 GLU GLU ASN PRO LYS ILE THR ALA GLU LEU VAL LYS GLY SEQRES 15 A 200 LEU ARG LYS ASP ILE ILE GLU THR GLY VAL SER ASN ILE SEQRES 16 A 200 GLY ILE SER VAL ALA MODRES 2Q9R MSE A 30 MET SELENOMETHIONINE MODRES 2Q9R MSE A 95 MET SELENOMETHIONINE MODRES 2Q9R MSE A 154 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 95 8 HET MSE A 154 8 HET SO4 A 200 5 HET SO4 A 201 5 HET ACT A 202 4 HET BEZ A 203 9 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET GOL A 208 6 HET GOL A 209 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM BEZ BENZOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 BEZ C7 H6 O2 FORMUL 6 GOL 6(C3 H8 O3) FORMUL 12 HOH *124(H2 O) HELIX 1 1 GLY A 6 LEU A 14 1 9 HELIX 2 2 THR A 15 GLU A 42 1 28 HELIX 3 3 ASP A 45 ASP A 62 1 18 HELIX 4 4 ASN A 68 ASN A 79 1 12 HELIX 5 5 GLU A 82 PHE A 86 5 5 HELIX 6 6 GLY A 90 LYS A 111 1 22 HELIX 7 7 ILE A 112 ASN A 118 1 7 HELIX 8 8 ASN A 118 ASP A 136 1 19 HELIX 9 9 VAL A 140 ALA A 150 1 11 HELIX 10 10 HIS A 151 GLU A 170 1 20 HELIX 11 11 THR A 175 GLY A 190 1 16 LINK C ARG A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N LEU A 31 1555 1555 1.34 LINK C ALA A 94 N MSE A 95 1555 1555 1.34 LINK C MSE A 95 N ASP A 96 1555 1555 1.33 LINK C VAL A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N GLU A 155 1555 1555 1.32 SITE 1 AC1 5 PHE A 86 GLU A 87 ALA A 88 HOH A 274 SITE 2 AC1 5 HOH A 297 SITE 1 AC2 6 PHE A 67 ASN A 68 ILE A 69 ASP A 70 SITE 2 AC2 6 GLN A 109 HOH A 332 SITE 1 AC3 2 GLU A 156 HOH A 271 SITE 1 AC4 7 ASN A 33 GLY A 90 SER A 135 PHE A 147 SITE 2 AC4 7 HIS A 151 HOH A 213 HOH A 215 SITE 1 AC5 5 SER A 59 LEU A 65 LYS A 66 PHE A 67 SITE 2 AC5 5 HOH A 281 SITE 1 AC6 4 PHE A 7 LYS A 158 ASN A 162 GOL A 209 SITE 1 AC7 6 LEU A 160 SER A 163 ILE A 167 LEU A 182 SITE 2 AC7 6 ASP A 185 HOH A 270 SITE 1 AC8 5 GLU A 39 ASP A 146 PHE A 147 VAL A 198 SITE 2 AC8 5 HOH A 243 SITE 1 AC9 2 GLY A 44 ASN A 79 SITE 1 BC1 2 ASP A 145 GOL A 205 CRYST1 68.570 77.140 87.170 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011472 0.00000 MASTER 409 0 13 11 0 0 16 6 0 0 0 16 END