HEADER HORMONE RECEPTOR 11-JUN-07 2Q8S TITLE X-RAY CRYSTAL STRUCTURE OF THE NUCLEAR HORMONE RECEPTOR PPAR-GAMMA IN TITLE 2 A COMPLEX WITH A PPAR GAMMA/ALPHA DUAL AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUE 235-505); COMPND 5 SYNONYM: PPAR-GAMMA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: PPARG, NR1C3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS LIGAND-BOUND COMPLEX, HORMONE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.F.OHREN REVDAT 3 13-JUL-11 2Q8S 1 VERSN REVDAT 2 24-FEB-09 2Q8S 1 VERSN REVDAT 1 14-OCT-08 2Q8S 0 JRNL AUTH A.CASIMIRO-GARCIA,C.F.BIGGE,J.A.DAVIS,T.PADALINO,J.PULASKI, JRNL AUTH 2 J.F.OHREN,P.MCCONNELL,C.D.KANE,L.J.ROYER,K.A.STEVENS, JRNL AUTH 3 B.J.AUERBACH,W.T.COLLARD,C.MCGREGOR,S.A.FAKHOURY,R.P.SCHAUM, JRNL AUTH 4 H.ZHOU JRNL TITL EFFECTS OF MODIFICATIONS OF THE LINKER IN A SERIES OF JRNL TITL 2 PHENYLPROPANOIC ACID DERIVATIVES: SYNTHESIS, EVALUATION AS JRNL TITL 3 PPARALPHA/GAMMA DUAL AGONISTS, AND X-RAY CRYSTALLOGRAPHIC JRNL TITL 4 STUDIES. JRNL REF BIOORG.MED.CHEM. V. 16 4883 2008 JRNL REFN ISSN 0968-0896 JRNL PMID 18394907 JRNL DOI 10.1016/J.BMC.2008.03.043 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 26150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.53000 REMARK 3 B22 (A**2) : 7.23000 REMARK 3 B33 (A**2) : -5.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4162 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3919 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5599 ; 1.143 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9164 ; 1.124 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 5.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;38.658 ;25.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;17.038 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 646 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4467 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 986 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3841 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2046 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2333 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.039 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3312 ; 0.610 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1022 ; 0.069 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4083 ; 0.690 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 0.882 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1516 ; 1.359 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4710 49.7270 14.0420 REMARK 3 T TENSOR REMARK 3 T11: -0.2045 T22: -0.1952 REMARK 3 T33: 0.0021 T12: 0.0781 REMARK 3 T13: 0.0174 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.1907 L22: 2.0149 REMARK 3 L33: 8.1767 L12: 0.1930 REMARK 3 L13: -1.5253 L23: -3.6998 REMARK 3 S TENSOR REMARK 3 S11: -0.3196 S12: 0.2062 S13: -0.1709 REMARK 3 S21: -0.1651 S22: 0.2896 S23: 0.1060 REMARK 3 S31: -0.0285 S32: -0.7177 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1530 65.6770 -2.7350 REMARK 3 T TENSOR REMARK 3 T11: -0.1545 T22: -0.1027 REMARK 3 T33: -0.2546 T12: -0.1087 REMARK 3 T13: 0.0872 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 17.6579 L22: 5.0371 REMARK 3 L33: 7.0923 L12: 2.6328 REMARK 3 L13: 0.2102 L23: -1.3694 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: 1.3354 S13: 0.9797 REMARK 3 S21: 0.4071 S22: 0.3124 S23: 0.4812 REMARK 3 S31: -0.9608 S32: 0.2298 S33: -0.4947 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1910 69.8090 12.9730 REMARK 3 T TENSOR REMARK 3 T11: -0.1055 T22: -0.0700 REMARK 3 T33: -0.0565 T12: 0.0031 REMARK 3 T13: -0.1235 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 35.4452 L22: 10.5857 REMARK 3 L33: 22.4333 L12: 13.5162 REMARK 3 L13: -28.0763 L23: -9.6800 REMARK 3 S TENSOR REMARK 3 S11: 0.3879 S12: 0.9694 S13: 1.7057 REMARK 3 S21: 0.1191 S22: 0.3785 S23: 0.4608 REMARK 3 S31: -0.8896 S32: -0.3305 S33: -0.7664 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5910 56.9600 21.3550 REMARK 3 T TENSOR REMARK 3 T11: -0.0679 T22: -0.2631 REMARK 3 T33: -0.0444 T12: 0.1501 REMARK 3 T13: -0.0017 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.0272 L22: 0.5613 REMARK 3 L33: 7.6517 L12: 1.0072 REMARK 3 L13: -1.8760 L23: -1.0835 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -0.2436 S13: 0.0282 REMARK 3 S21: 0.1539 S22: 0.1145 S23: -0.0255 REMARK 3 S31: -0.5135 S32: 0.2182 S33: 0.0387 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 348 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2520 56.7730 9.2550 REMARK 3 T TENSOR REMARK 3 T11: -0.2448 T22: 0.0610 REMARK 3 T33: -0.0720 T12: 0.0556 REMARK 3 T13: 0.0109 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 6.2136 L22: 10.7176 REMARK 3 L33: 5.5415 L12: 6.5032 REMARK 3 L13: -2.5140 L23: -3.6036 REMARK 3 S TENSOR REMARK 3 S11: -0.1968 S12: -0.1350 S13: -0.5937 REMARK 3 S21: 0.1538 S22: 0.0478 S23: -0.8089 REMARK 3 S31: -0.1747 S32: 1.2895 S33: 0.1490 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 381 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5610 45.4110 26.9690 REMARK 3 T TENSOR REMARK 3 T11: -0.1135 T22: -0.2010 REMARK 3 T33: 0.0478 T12: 0.2155 REMARK 3 T13: 0.0718 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 1.3769 L22: 1.6687 REMARK 3 L33: 7.6384 L12: -0.2304 REMARK 3 L13: 1.7204 L23: 1.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.2786 S12: -0.1853 S13: -0.3322 REMARK 3 S21: 0.3266 S22: 0.2678 S23: 0.0959 REMARK 3 S31: 0.2301 S32: 0.1074 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 474 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5330 57.7740 22.4430 REMARK 3 T TENSOR REMARK 3 T11: -0.2155 T22: -0.0368 REMARK 3 T33: -0.1516 T12: 0.1617 REMARK 3 T13: -0.0953 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.9959 L22: 11.4297 REMARK 3 L33: 1.1636 L12: 3.8765 REMARK 3 L13: -0.1182 L23: 1.7466 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: -0.5206 S13: -0.2699 REMARK 3 S21: 0.4934 S22: -0.1252 S23: -0.8324 REMARK 3 S31: 0.1290 S32: 0.5013 S33: -0.0083 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 210 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0430 21.6110 35.0230 REMARK 3 T TENSOR REMARK 3 T11: -0.0268 T22: -0.4167 REMARK 3 T33: -0.0524 T12: 0.0846 REMARK 3 T13: 0.0679 T23: 0.0763 REMARK 3 L TENSOR REMARK 3 L11: 2.8632 L22: 3.8713 REMARK 3 L33: 11.3662 L12: 0.5903 REMARK 3 L13: 2.3925 L23: 2.4627 REMARK 3 S TENSOR REMARK 3 S11: 0.2189 S12: -0.3272 S13: -0.6011 REMARK 3 S21: 0.4819 S22: -0.0457 S23: -0.3341 REMARK 3 S31: 0.9880 S32: -0.1530 S33: -0.1732 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 240 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4260 32.0820 55.0900 REMARK 3 T TENSOR REMARK 3 T11: -0.3366 T22: 0.0045 REMARK 3 T33: -0.5160 T12: 0.1678 REMARK 3 T13: -0.0134 T23: 0.1225 REMARK 3 L TENSOR REMARK 3 L11: 18.1485 L22: 10.7507 REMARK 3 L33: 20.3296 L12: -0.4133 REMARK 3 L13: 3.1451 L23: 6.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.6275 S12: -0.8213 S13: -0.8180 REMARK 3 S21: 1.0211 S22: -0.3863 S23: -0.7629 REMARK 3 S31: 0.6732 S32: 1.5127 S33: -0.2412 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 276 B 291 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3640 37.5570 40.7170 REMARK 3 T TENSOR REMARK 3 T11: -0.1117 T22: 0.0242 REMARK 3 T33: -0.1942 T12: -0.0354 REMARK 3 T13: 0.0978 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.3348 L22: 44.3030 REMARK 3 L33: 35.7062 L12: 8.8942 REMARK 3 L13: 8.8281 L23: 34.7348 REMARK 3 S TENSOR REMARK 3 S11: -0.3850 S12: -0.6836 S13: -0.0421 REMARK 3 S21: -0.0837 S22: 0.9147 S23: 0.1318 REMARK 3 S31: -0.9664 S32: 2.2093 S33: -0.5297 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 297 B 345 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0470 30.0960 29.1180 REMARK 3 T TENSOR REMARK 3 T11: -0.0799 T22: -0.3196 REMARK 3 T33: -0.0184 T12: 0.1358 REMARK 3 T13: 0.0268 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.8350 L22: 0.9517 REMARK 3 L33: 7.7328 L12: -0.3113 REMARK 3 L13: -0.7978 L23: 1.3731 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.0071 S13: -0.0933 REMARK 3 S21: 0.1435 S22: 0.0967 S23: -0.0152 REMARK 3 S31: 0.0531 S32: 0.2933 S33: -0.1286 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 348 B 378 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3620 42.8340 43.1330 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: -0.2938 REMARK 3 T33: -0.1469 T12: 0.0445 REMARK 3 T13: 0.0806 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 19.7577 L22: 6.2484 REMARK 3 L33: 9.1586 L12: 7.6762 REMARK 3 L13: 9.7318 L23: 4.2827 REMARK 3 S TENSOR REMARK 3 S11: -0.6882 S12: 0.0467 S13: 1.2794 REMARK 3 S21: 0.0390 S22: 0.1592 S23: 0.5317 REMARK 3 S31: -1.3665 S32: 0.5254 S33: 0.5290 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 381 B 424 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4360 29.2730 21.5980 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: -0.3481 REMARK 3 T33: 0.0323 T12: 0.1756 REMARK 3 T13: 0.0155 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 4.2596 L22: 1.6865 REMARK 3 L33: 6.1795 L12: 1.6690 REMARK 3 L13: -2.1912 L23: -2.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: 0.3159 S13: -0.0605 REMARK 3 S21: -0.0775 S22: -0.0842 S23: 0.2190 REMARK 3 S31: -0.0142 S32: -0.2684 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 430 B 474 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3750 41.9550 31.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: -0.3541 REMARK 3 T33: -0.1639 T12: 0.1110 REMARK 3 T13: 0.1058 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 19.2625 L22: 2.1341 REMARK 3 L33: 1.6889 L12: 2.7317 REMARK 3 L13: 2.7559 L23: 0.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: 0.3088 S13: 1.5196 REMARK 3 S21: 0.1521 S22: -0.0987 S23: 0.1989 REMARK 3 S31: -0.2858 S32: 0.2288 S33: -0.1051 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1730 64.0190 12.9060 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: -0.2222 REMARK 3 T33: 0.1568 T12: -0.0520 REMARK 3 T13: -0.1082 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 24.8450 L22: 69.9395 REMARK 3 L33: 97.0873 L12: 9.0852 REMARK 3 L13: -11.8821 L23: -82.3778 REMARK 3 S TENSOR REMARK 3 S11: -0.2759 S12: -0.5744 S13: -3.2460 REMARK 3 S21: 0.7412 S22: -0.4555 S23: -1.1287 REMARK 3 S31: -3.6547 S32: -1.2117 S33: 0.7314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB043292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CRK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMMIDIZOLE, 860 MM SODIUM REMARK 280 CITRATE, GLYCEROL 5 % (V/V) , PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.72750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.00800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.72750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.00800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FORMS A HOMDIMER IN THIS CRYSTAL FORM THAT MIMICS THE REMARK 300 FUNCTIONAL RXR HETERODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 THR B 238 REMARK 465 HIS B 266 REMARK 465 ILE B 267 REMARK 465 THR B 268 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 461 OG1 CG2 REMARK 470 ARG B 357 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 357 157.31 -29.22 REMARK 500 LEU A 393 56.00 -95.99 REMARK 500 LYS B 240 107.62 -165.57 REMARK 500 ASP B 310 131.03 -33.44 REMARK 500 SER B 355 34.00 -90.37 REMARK 500 ARG B 357 -179.39 -178.87 REMARK 500 LEU B 393 46.12 -82.83 REMARK 500 THR B 459 -60.06 -128.89 REMARK 500 TYR B 473 48.96 -99.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1017 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B 495 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH B 500 DISTANCE = 5.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L92 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PRG RELATED DB: PDB DBREF 2Q8S A 207 477 UNP P37231 PPARG_HUMAN 235 505 DBREF 2Q8S B 207 477 UNP P37231 PPARG_HUMAN 235 505 SEQRES 1 A 271 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 2 A 271 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 3 A 271 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 4 A 271 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 5 A 271 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 6 A 271 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 7 A 271 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 8 A 271 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 9 A 271 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 10 A 271 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 11 A 271 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 12 A 271 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 13 A 271 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 14 A 271 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 15 A 271 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 16 A 271 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 17 A 271 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 18 A 271 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 19 A 271 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 20 A 271 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 21 A 271 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 271 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 2 B 271 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 3 B 271 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 4 B 271 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 5 B 271 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 6 B 271 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 7 B 271 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 8 B 271 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 9 B 271 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 10 B 271 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 11 B 271 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 12 B 271 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 13 B 271 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 14 B 271 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 15 B 271 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 16 B 271 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 17 B 271 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 18 B 271 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 19 B 271 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 20 B 271 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 21 B 271 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR HET L92 A1001 31 HETNAM L92 (2S)-3-{4-[3-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL) HETNAM 2 L92 PROPYL]PHENYL}-2-(1H-PYRROL-1-YL)PROPANOIC ACID FORMUL 3 L92 C26 H26 N2 O3 FORMUL 4 HOH *59(H2 O) HELIX 1 1 GLU A 207 PHE A 226 1 20 HELIX 2 2 THR A 229 GLY A 239 1 11 HELIX 3 3 ASP A 251 GLU A 259 1 9 HELIX 4 4 GLU A 276 SER A 302 1 27 HELIX 5 5 ASP A 310 SER A 332 1 23 HELIX 6 6 ARG A 350 SER A 355 1 6 HELIX 7 7 MET A 364 ALA A 376 1 13 HELIX 8 8 ASP A 380 LEU A 393 1 14 HELIX 9 9 ASN A 402 HIS A 425 1 24 HELIX 10 10 GLN A 430 GLU A 460 1 31 HELIX 11 11 HIS A 466 LYS A 474 1 9 HELIX 12 12 GLU B 207 PHE B 226 1 20 HELIX 13 13 THR B 229 LEU B 237 1 9 HELIX 14 14 ASP B 251 ILE B 262 1 12 HELIX 15 15 GLU B 276 ILE B 303 1 28 HELIX 16 16 ASP B 310 LEU B 333 1 24 HELIX 17 17 ARG B 350 SER B 355 1 6 HELIX 18 18 MET B 364 ALA B 376 1 13 HELIX 19 19 ASP B 380 LEU B 393 1 14 HELIX 20 20 ASN B 402 HIS B 425 1 24 HELIX 21 21 GLN B 430 LYS B 458 1 29 HELIX 22 22 LEU B 468 TYR B 473 1 6 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 B 4 PHE B 247 ILE B 249 0 SHEET 2 B 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 B 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 B 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 SITE 1 AC1 11 PHE A 282 GLY A 284 CYS A 285 ARG A 288 SITE 2 AC1 11 SER A 289 HIS A 323 TYR A 327 LEU A 330 SITE 3 AC1 11 LEU A 353 HIS A 449 TYR A 473 CRYST1 93.455 62.016 118.660 90.00 102.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010700 0.000000 0.002381 0.00000 SCALE2 0.000000 0.016125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008633 0.00000 MASTER 607 0 1 22 8 0 3 6 0 0 0 42 END