HEADER ISOMERASE 05-JUN-07 2Q6E TITLE CRYSTAL STRUCTURE OF GLUCURONATE ISOMERASE FROM BACILLUS HALODURANS TITLE 2 COMPLEXED WITH ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH0493 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS C-125; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125, DSM 18197, FERM 7344, JCM 9153; SOURCE 5 ATCC: BAA-125; SOURCE 6 GENE: BH0493; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCURONATE ISOMERASE, BH0493, STRUCTURAL GENOMICS, NYSGXRC, TARGET KEYWDS 2 9247A, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,Y.PATSKOVSKY,R.TORO,J.M.SAUDER,S.K.BURLEY, AUTHOR 2 F.M.RAUSCHEL,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 4 03-FEB-21 2Q6E 1 AUTHOR JRNL REMARK LINK REVDAT 3 14-NOV-18 2Q6E 1 AUTHOR REVDAT 2 24-FEB-09 2Q6E 1 VERSN REVDAT 1 19-JUN-07 2Q6E 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,Y.PATSKOVSKY,R.TORO,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,F.M.RAUSHEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GLUCURONATE ISOMERASE FROM BACILLUS JRNL TITL 2 HALODURANS COMPLEXED WITH ZN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 126633.650 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 64148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3269 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4825 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 273 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.140 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : &_1_PARAMETER_INFILE_4 REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Q6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64148 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Q08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS-HCL, 0.2M REMARK 280 SODIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.41050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.20525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.61575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.41050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 147.61575 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.20525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE TRIMER ABC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 414 REMARK 465 ASN A 415 REMARK 465 ASP A 416 REMARK 465 HIS A 417 REMARK 465 VAL A 418 REMARK 465 THR A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 LYS A 422 REMARK 465 VAL A 423 REMARK 465 GLU A 424 REMARK 465 GLN A 425 REMARK 465 GLN A 426 REMARK 465 THR A 427 REMARK 465 MET B 1 REMARK 465 ARG B 414 REMARK 465 ASN B 415 REMARK 465 ASP B 416 REMARK 465 HIS B 417 REMARK 465 VAL B 418 REMARK 465 THR B 419 REMARK 465 SER B 420 REMARK 465 VAL B 421 REMARK 465 LYS B 422 REMARK 465 VAL B 423 REMARK 465 GLU B 424 REMARK 465 GLN B 425 REMARK 465 GLN B 426 REMARK 465 THR B 427 REMARK 465 MET C 1 REMARK 465 ARG C 414 REMARK 465 ASN C 415 REMARK 465 ASP C 416 REMARK 465 HIS C 417 REMARK 465 VAL C 418 REMARK 465 THR C 419 REMARK 465 SER C 420 REMARK 465 VAL C 421 REMARK 465 LYS C 422 REMARK 465 VAL C 423 REMARK 465 GLU C 424 REMARK 465 GLN C 425 REMARK 465 GLN C 426 REMARK 465 THR C 427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 4 39.16 -146.40 REMARK 500 HIS A 26 116.13 -166.78 REMARK 500 ASP A 41 155.31 146.54 REMARK 500 PRO A 146 5.15 -64.50 REMARK 500 SER A 163 -16.76 -44.64 REMARK 500 LYS A 191 64.98 -69.97 REMARK 500 CYS A 243 -60.31 -123.03 REMARK 500 TRP A 326 -106.38 50.06 REMARK 500 SER A 348 44.30 -82.08 REMARK 500 SER A 405 -53.47 -164.04 REMARK 500 ASN B 4 38.66 -146.15 REMARK 500 HIS B 26 117.15 -167.18 REMARK 500 ASP B 41 155.81 145.66 REMARK 500 PRO B 146 6.09 -65.91 REMARK 500 SER B 163 -15.82 -44.85 REMARK 500 CYS B 243 -61.29 -124.72 REMARK 500 TRP B 326 -105.32 48.57 REMARK 500 SER B 348 46.87 -84.19 REMARK 500 SER B 405 -53.17 -162.63 REMARK 500 ASN C 4 38.60 -146.49 REMARK 500 HIS C 26 115.78 -167.54 REMARK 500 ASP C 41 156.02 145.81 REMARK 500 PRO C 146 6.24 -65.12 REMARK 500 SER C 163 -16.13 -44.50 REMARK 500 LYS C 191 64.81 -69.71 REMARK 500 CYS C 243 -60.51 -123.77 REMARK 500 TRP C 326 -106.46 50.06 REMARK 500 SER C 348 45.85 -83.85 REMARK 500 SER C 405 -53.28 -165.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 28 NE2 108.9 REMARK 620 3 ASP A 355 OD1 107.3 91.4 REMARK 620 4 HOH A 555 O 111.3 103.0 131.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 553 O REMARK 620 2 HOH A 554 O 88.7 REMARK 620 3 HOH B 601 O 89.7 88.7 REMARK 620 4 HOH B 602 O 170.9 84.1 84.5 REMARK 620 5 HOH C 544 O 91.9 177.5 88.9 95.0 REMARK 620 6 HOH C 545 O 92.4 87.4 175.5 92.9 95.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 28 NE2 110.9 REMARK 620 3 ASP B 355 OD1 104.7 89.5 REMARK 620 4 HOH B 603 O 120.4 110.3 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 28 NE2 112.8 REMARK 620 3 ASP C 355 OD1 104.6 85.5 REMARK 620 4 HOH C 546 O 122.5 112.2 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9247A RELATED DB: TARGETDB REMARK 900 RELATED ID: 2Q08 RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN DIFFERENT SPACE GROUP DBREF 2Q6E A 1 427 UNP Q9KFI6 Q9KFI6_BACHD 1 427 DBREF 2Q6E B 1 427 UNP Q9KFI6 Q9KFI6_BACHD 1 427 DBREF 2Q6E C 1 427 UNP Q9KFI6 Q9KFI6_BACHD 1 427 SEQRES 1 A 427 MET SER ILE ASN SER ARG GLU VAL LEU ALA GLU LYS VAL SEQRES 2 A 427 LYS ASN ALA VAL ASN ASN GLN PRO VAL THR ASP MET HIS SEQRES 3 A 427 THR HIS LEU PHE SER PRO ASN PHE GLY GLU ILE LEU LEU SEQRES 4 A 427 TRP ASP ILE ASP GLU LEU LEU THR TYR HIS TYR LEU VAL SEQRES 5 A 427 ALA GLU VAL MET ARG TRP THR ASP VAL SER ILE GLU ALA SEQRES 6 A 427 PHE TRP ALA MET SER LYS ARG GLU GLN ALA ASP LEU ILE SEQRES 7 A 427 TRP GLU GLU LEU PHE ILE LYS ARG SER PRO VAL SER GLU SEQRES 8 A 427 ALA CYS ARG GLY VAL LEU THR CYS LEU GLN GLY LEU GLY SEQRES 9 A 427 LEU ASP PRO ALA THR ARG ASP LEU GLN VAL TYR ARG GLU SEQRES 10 A 427 TYR PHE ALA LYS LYS THR SER GLU GLU GLN VAL ASP THR SEQRES 11 A 427 VAL LEU GLN LEU ALA ASN VAL SER ASP VAL VAL MET THR SEQRES 12 A 427 ASN ASP PRO PHE ASP ASP ASN GLU ARG ILE SER TRP LEU SEQRES 13 A 427 GLU GLY LYS GLN PRO ASP SER ARG PHE HIS ALA ALA LEU SEQRES 14 A 427 ARG LEU ASP PRO LEU LEU ASN GLU TYR GLU GLN THR LYS SEQRES 15 A 427 HIS ARG LEU ARG ASP TRP GLY TYR LYS VAL ASN ASP GLU SEQRES 16 A 427 TRP ASN GLU GLY SER ILE GLN GLU VAL LYS ARG PHE LEU SEQRES 17 A 427 THR ASP TRP ILE GLU ARG MET ASP PRO VAL TYR MET ALA SEQRES 18 A 427 VAL SER LEU PRO PRO THR PHE SER PHE PRO GLU GLU SER SEQRES 19 A 427 ASN ARG GLY ARG ILE ILE ARG ASP CYS LEU LEU PRO VAL SEQRES 20 A 427 ALA GLU LYS HIS ASN ILE PRO PHE ALA MET MET ILE GLY SEQRES 21 A 427 VAL LYS LYS ARG VAL HIS PRO ALA LEU GLY ASP ALA GLY SEQRES 22 A 427 ASP PHE VAL GLY LYS ALA SER MET ASP GLY VAL GLU HIS SEQRES 23 A 427 LEU LEU ARG GLU TYR PRO ASN ASN LYS PHE LEU VAL THR SEQRES 24 A 427 MET LEU SER ARG GLU ASN GLN HIS GLU LEU VAL VAL LEU SEQRES 25 A 427 ALA ARG LYS PHE SER ASN LEU MET ILE PHE GLY CYS TRP SEQRES 26 A 427 TRP PHE MET ASN ASN PRO GLU ILE ILE ASN GLU MET THR SEQRES 27 A 427 ARG MET ARG MET GLU MET LEU GLY THR SER PHE ILE PRO SEQRES 28 A 427 GLN HIS SER ASP ALA ARG VAL LEU GLU GLN LEU ILE TYR SEQRES 29 A 427 LYS TRP HIS HIS SER LYS SER ILE ILE ALA GLU VAL LEU SEQRES 30 A 427 ILE ASP LYS TYR ASP ASP ILE LEU GLN ALA GLY TRP GLU SEQRES 31 A 427 VAL THR GLU GLU GLU ILE LYS ARG ASP VAL ALA ASP LEU SEQRES 32 A 427 PHE SER ARG ASN PHE TRP ARG PHE VAL GLY ARG ASN ASP SEQRES 33 A 427 HIS VAL THR SER VAL LYS VAL GLU GLN GLN THR SEQRES 1 B 427 MET SER ILE ASN SER ARG GLU VAL LEU ALA GLU LYS VAL SEQRES 2 B 427 LYS ASN ALA VAL ASN ASN GLN PRO VAL THR ASP MET HIS SEQRES 3 B 427 THR HIS LEU PHE SER PRO ASN PHE GLY GLU ILE LEU LEU SEQRES 4 B 427 TRP ASP ILE ASP GLU LEU LEU THR TYR HIS TYR LEU VAL SEQRES 5 B 427 ALA GLU VAL MET ARG TRP THR ASP VAL SER ILE GLU ALA SEQRES 6 B 427 PHE TRP ALA MET SER LYS ARG GLU GLN ALA ASP LEU ILE SEQRES 7 B 427 TRP GLU GLU LEU PHE ILE LYS ARG SER PRO VAL SER GLU SEQRES 8 B 427 ALA CYS ARG GLY VAL LEU THR CYS LEU GLN GLY LEU GLY SEQRES 9 B 427 LEU ASP PRO ALA THR ARG ASP LEU GLN VAL TYR ARG GLU SEQRES 10 B 427 TYR PHE ALA LYS LYS THR SER GLU GLU GLN VAL ASP THR SEQRES 11 B 427 VAL LEU GLN LEU ALA ASN VAL SER ASP VAL VAL MET THR SEQRES 12 B 427 ASN ASP PRO PHE ASP ASP ASN GLU ARG ILE SER TRP LEU SEQRES 13 B 427 GLU GLY LYS GLN PRO ASP SER ARG PHE HIS ALA ALA LEU SEQRES 14 B 427 ARG LEU ASP PRO LEU LEU ASN GLU TYR GLU GLN THR LYS SEQRES 15 B 427 HIS ARG LEU ARG ASP TRP GLY TYR LYS VAL ASN ASP GLU SEQRES 16 B 427 TRP ASN GLU GLY SER ILE GLN GLU VAL LYS ARG PHE LEU SEQRES 17 B 427 THR ASP TRP ILE GLU ARG MET ASP PRO VAL TYR MET ALA SEQRES 18 B 427 VAL SER LEU PRO PRO THR PHE SER PHE PRO GLU GLU SER SEQRES 19 B 427 ASN ARG GLY ARG ILE ILE ARG ASP CYS LEU LEU PRO VAL SEQRES 20 B 427 ALA GLU LYS HIS ASN ILE PRO PHE ALA MET MET ILE GLY SEQRES 21 B 427 VAL LYS LYS ARG VAL HIS PRO ALA LEU GLY ASP ALA GLY SEQRES 22 B 427 ASP PHE VAL GLY LYS ALA SER MET ASP GLY VAL GLU HIS SEQRES 23 B 427 LEU LEU ARG GLU TYR PRO ASN ASN LYS PHE LEU VAL THR SEQRES 24 B 427 MET LEU SER ARG GLU ASN GLN HIS GLU LEU VAL VAL LEU SEQRES 25 B 427 ALA ARG LYS PHE SER ASN LEU MET ILE PHE GLY CYS TRP SEQRES 26 B 427 TRP PHE MET ASN ASN PRO GLU ILE ILE ASN GLU MET THR SEQRES 27 B 427 ARG MET ARG MET GLU MET LEU GLY THR SER PHE ILE PRO SEQRES 28 B 427 GLN HIS SER ASP ALA ARG VAL LEU GLU GLN LEU ILE TYR SEQRES 29 B 427 LYS TRP HIS HIS SER LYS SER ILE ILE ALA GLU VAL LEU SEQRES 30 B 427 ILE ASP LYS TYR ASP ASP ILE LEU GLN ALA GLY TRP GLU SEQRES 31 B 427 VAL THR GLU GLU GLU ILE LYS ARG ASP VAL ALA ASP LEU SEQRES 32 B 427 PHE SER ARG ASN PHE TRP ARG PHE VAL GLY ARG ASN ASP SEQRES 33 B 427 HIS VAL THR SER VAL LYS VAL GLU GLN GLN THR SEQRES 1 C 427 MET SER ILE ASN SER ARG GLU VAL LEU ALA GLU LYS VAL SEQRES 2 C 427 LYS ASN ALA VAL ASN ASN GLN PRO VAL THR ASP MET HIS SEQRES 3 C 427 THR HIS LEU PHE SER PRO ASN PHE GLY GLU ILE LEU LEU SEQRES 4 C 427 TRP ASP ILE ASP GLU LEU LEU THR TYR HIS TYR LEU VAL SEQRES 5 C 427 ALA GLU VAL MET ARG TRP THR ASP VAL SER ILE GLU ALA SEQRES 6 C 427 PHE TRP ALA MET SER LYS ARG GLU GLN ALA ASP LEU ILE SEQRES 7 C 427 TRP GLU GLU LEU PHE ILE LYS ARG SER PRO VAL SER GLU SEQRES 8 C 427 ALA CYS ARG GLY VAL LEU THR CYS LEU GLN GLY LEU GLY SEQRES 9 C 427 LEU ASP PRO ALA THR ARG ASP LEU GLN VAL TYR ARG GLU SEQRES 10 C 427 TYR PHE ALA LYS LYS THR SER GLU GLU GLN VAL ASP THR SEQRES 11 C 427 VAL LEU GLN LEU ALA ASN VAL SER ASP VAL VAL MET THR SEQRES 12 C 427 ASN ASP PRO PHE ASP ASP ASN GLU ARG ILE SER TRP LEU SEQRES 13 C 427 GLU GLY LYS GLN PRO ASP SER ARG PHE HIS ALA ALA LEU SEQRES 14 C 427 ARG LEU ASP PRO LEU LEU ASN GLU TYR GLU GLN THR LYS SEQRES 15 C 427 HIS ARG LEU ARG ASP TRP GLY TYR LYS VAL ASN ASP GLU SEQRES 16 C 427 TRP ASN GLU GLY SER ILE GLN GLU VAL LYS ARG PHE LEU SEQRES 17 C 427 THR ASP TRP ILE GLU ARG MET ASP PRO VAL TYR MET ALA SEQRES 18 C 427 VAL SER LEU PRO PRO THR PHE SER PHE PRO GLU GLU SER SEQRES 19 C 427 ASN ARG GLY ARG ILE ILE ARG ASP CYS LEU LEU PRO VAL SEQRES 20 C 427 ALA GLU LYS HIS ASN ILE PRO PHE ALA MET MET ILE GLY SEQRES 21 C 427 VAL LYS LYS ARG VAL HIS PRO ALA LEU GLY ASP ALA GLY SEQRES 22 C 427 ASP PHE VAL GLY LYS ALA SER MET ASP GLY VAL GLU HIS SEQRES 23 C 427 LEU LEU ARG GLU TYR PRO ASN ASN LYS PHE LEU VAL THR SEQRES 24 C 427 MET LEU SER ARG GLU ASN GLN HIS GLU LEU VAL VAL LEU SEQRES 25 C 427 ALA ARG LYS PHE SER ASN LEU MET ILE PHE GLY CYS TRP SEQRES 26 C 427 TRP PHE MET ASN ASN PRO GLU ILE ILE ASN GLU MET THR SEQRES 27 C 427 ARG MET ARG MET GLU MET LEU GLY THR SER PHE ILE PRO SEQRES 28 C 427 GLN HIS SER ASP ALA ARG VAL LEU GLU GLN LEU ILE TYR SEQRES 29 C 427 LYS TRP HIS HIS SER LYS SER ILE ILE ALA GLU VAL LEU SEQRES 30 C 427 ILE ASP LYS TYR ASP ASP ILE LEU GLN ALA GLY TRP GLU SEQRES 31 C 427 VAL THR GLU GLU GLU ILE LYS ARG ASP VAL ALA ASP LEU SEQRES 32 C 427 PHE SER ARG ASN PHE TRP ARG PHE VAL GLY ARG ASN ASP SEQRES 33 C 427 HIS VAL THR SER VAL LYS VAL GLU GLN GLN THR HET ZN A 501 1 HET CL A 502 1 HET ZN B 502 1 HET ZN C 503 1 HET NA C 504 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 4 ZN 3(ZN 2+) FORMUL 5 CL CL 1- FORMUL 8 NA NA 1+ FORMUL 9 HOH *196(H2 O) HELIX 1 1 SER A 5 GLN A 20 1 16 HELIX 2 2 SER A 31 LEU A 38 5 8 HELIX 3 3 ASP A 41 THR A 47 1 7 HELIX 4 4 TYR A 48 MET A 56 1 9 HELIX 5 5 SER A 62 MET A 69 1 8 HELIX 6 6 SER A 70 ILE A 84 1 15 HELIX 7 7 SER A 90 GLY A 104 1 15 HELIX 8 8 ASP A 106 ARG A 110 5 5 HELIX 9 9 ASP A 111 LYS A 121 1 11 HELIX 10 10 THR A 123 ALA A 135 1 13 HELIX 11 11 ASP A 148 GLU A 157 1 10 HELIX 12 12 LEU A 171 GLU A 177 1 7 HELIX 13 13 GLU A 177 TRP A 188 1 12 HELIX 14 14 ASN A 197 ASP A 216 1 20 HELIX 15 15 SER A 234 CYS A 243 1 10 HELIX 16 16 CYS A 243 HIS A 251 1 9 HELIX 17 17 HIS A 266 GLY A 273 5 8 HELIX 18 18 MET A 281 TYR A 291 1 11 HELIX 19 19 SER A 302 GLU A 304 5 3 HELIX 20 20 ASN A 305 PHE A 316 1 12 HELIX 21 21 TRP A 325 ASN A 329 5 5 HELIX 22 22 ASN A 330 GLY A 346 1 17 HELIX 23 23 GLU A 360 GLN A 386 1 27 HELIX 24 24 THR A 392 SER A 405 1 14 HELIX 25 25 SER A 405 VAL A 412 1 8 HELIX 26 26 SER B 5 GLN B 20 1 16 HELIX 27 27 SER B 31 GLY B 35 5 5 HELIX 28 28 ASP B 41 THR B 47 1 7 HELIX 29 29 TYR B 48 ARG B 57 1 10 HELIX 30 30 SER B 62 MET B 69 1 8 HELIX 31 31 SER B 70 ILE B 84 1 15 HELIX 32 32 SER B 90 GLY B 104 1 15 HELIX 33 33 ASP B 106 ARG B 110 5 5 HELIX 34 34 ASP B 111 LYS B 121 1 11 HELIX 35 35 THR B 123 ALA B 135 1 13 HELIX 36 36 ASP B 148 GLU B 157 1 10 HELIX 37 37 LEU B 171 GLU B 177 1 7 HELIX 38 38 GLU B 177 TRP B 188 1 12 HELIX 39 39 ASN B 197 ASP B 216 1 20 HELIX 40 40 SER B 234 CYS B 243 1 10 HELIX 41 41 CYS B 243 HIS B 251 1 9 HELIX 42 42 HIS B 266 GLY B 273 5 8 HELIX 43 43 MET B 281 TYR B 291 1 11 HELIX 44 44 SER B 302 GLU B 304 5 3 HELIX 45 45 ASN B 305 PHE B 316 1 12 HELIX 46 46 TRP B 325 ASN B 329 5 5 HELIX 47 47 ASN B 330 GLY B 346 1 17 HELIX 48 48 GLU B 360 GLN B 386 1 27 HELIX 49 49 THR B 392 SER B 405 1 14 HELIX 50 50 SER B 405 VAL B 412 1 8 HELIX 51 51 SER C 5 GLN C 20 1 16 HELIX 52 52 SER C 31 GLY C 35 5 5 HELIX 53 53 ASP C 41 THR C 47 1 7 HELIX 54 54 TYR C 48 MET C 56 1 9 HELIX 55 55 SER C 62 MET C 69 1 8 HELIX 56 56 SER C 70 ILE C 84 1 15 HELIX 57 57 SER C 90 GLY C 104 1 15 HELIX 58 58 ASP C 106 ARG C 110 5 5 HELIX 59 59 ASP C 111 LYS C 121 1 11 HELIX 60 60 THR C 123 ALA C 135 1 13 HELIX 61 61 ASP C 148 GLU C 157 1 10 HELIX 62 62 LEU C 171 GLU C 177 1 7 HELIX 63 63 GLU C 177 TRP C 188 1 12 HELIX 64 64 ASN C 197 ASP C 216 1 20 HELIX 65 65 SER C 234 CYS C 243 1 10 HELIX 66 66 CYS C 243 HIS C 251 1 9 HELIX 67 67 HIS C 266 GLY C 273 5 8 HELIX 68 68 MET C 281 TYR C 291 1 11 HELIX 69 69 SER C 302 GLU C 304 5 3 HELIX 70 70 ASN C 305 PHE C 316 1 12 HELIX 71 71 TRP C 325 ASN C 329 5 5 HELIX 72 72 ASN C 330 GLY C 346 1 17 HELIX 73 73 GLU C 360 GLN C 386 1 27 HELIX 74 74 THR C 392 SER C 405 1 14 HELIX 75 75 SER C 405 VAL C 412 1 8 SHEET 1 A 3 VAL A 22 ASP A 24 0 SHEET 2 A 3 VAL A 137 VAL A 141 1 O ASP A 139 N ASP A 24 SHEET 3 A 3 PHE A 165 HIS A 166 1 O HIS A 166 N VAL A 140 SHEET 1 B 5 LEU A 169 ARG A 170 0 SHEET 2 B 5 MET A 220 LEU A 224 1 O ALA A 221 N LEU A 169 SHEET 3 B 5 PHE A 255 ILE A 259 1 O ALA A 256 N MET A 220 SHEET 4 B 5 PHE A 296 MET A 300 1 O LEU A 297 N MET A 257 SHEET 5 B 5 LEU A 319 ILE A 321 1 O MET A 320 N PHE A 296 SHEET 1 C 2 VAL A 261 LYS A 262 0 SHEET 2 C 2 PHE A 275 VAL A 276 -1 O PHE A 275 N LYS A 262 SHEET 1 D 3 VAL B 22 ASP B 24 0 SHEET 2 D 3 VAL B 137 VAL B 141 1 O ASP B 139 N ASP B 24 SHEET 3 D 3 PHE B 165 HIS B 166 1 O HIS B 166 N VAL B 140 SHEET 1 E 5 LEU B 169 ARG B 170 0 SHEET 2 E 5 MET B 220 LEU B 224 1 O ALA B 221 N LEU B 169 SHEET 3 E 5 PHE B 255 ILE B 259 1 O ALA B 256 N MET B 220 SHEET 4 E 5 PHE B 296 MET B 300 1 O LEU B 297 N MET B 257 SHEET 5 E 5 LEU B 319 ILE B 321 1 O MET B 320 N PHE B 296 SHEET 1 F 2 VAL B 261 LYS B 262 0 SHEET 2 F 2 PHE B 275 VAL B 276 -1 O PHE B 275 N LYS B 262 SHEET 1 G 3 VAL C 22 ASP C 24 0 SHEET 2 G 3 VAL C 137 VAL C 141 1 O ASP C 139 N ASP C 24 SHEET 3 G 3 PHE C 165 HIS C 166 1 O HIS C 166 N VAL C 140 SHEET 1 H 5 LEU C 169 ARG C 170 0 SHEET 2 H 5 MET C 220 LEU C 224 1 O ALA C 221 N LEU C 169 SHEET 3 H 5 PHE C 255 ILE C 259 1 O ALA C 256 N MET C 220 SHEET 4 H 5 PHE C 296 MET C 300 1 O LEU C 297 N MET C 257 SHEET 5 H 5 LEU C 319 ILE C 321 1 O MET C 320 N PHE C 296 SHEET 1 I 2 VAL C 261 LYS C 262 0 SHEET 2 I 2 PHE C 275 VAL C 276 -1 O PHE C 275 N LYS C 262 LINK NE2 HIS A 26 ZN ZN A 501 1555 1555 2.22 LINK NE2 HIS A 28 ZN ZN A 501 1555 1555 2.20 LINK OD1 ASP A 355 ZN ZN A 501 1555 1555 2.09 LINK ZN ZN A 501 O HOH A 555 1555 1555 2.18 LINK O HOH A 553 NA NA C 504 1555 1555 2.07 LINK O HOH A 554 NA NA C 504 1555 1555 2.18 LINK NE2 HIS B 26 ZN ZN B 502 1555 1555 2.21 LINK NE2 HIS B 28 ZN ZN B 502 1555 1555 2.15 LINK OD1 ASP B 355 ZN ZN B 502 1555 1555 2.18 LINK ZN ZN B 502 O HOH B 603 1555 1555 2.18 LINK O HOH B 601 NA NA C 504 1555 1555 2.14 LINK O HOH B 602 NA NA C 504 1555 1555 2.02 LINK NE2 HIS C 26 ZN ZN C 503 1555 1555 2.13 LINK NE2 HIS C 28 ZN ZN C 503 1555 1555 2.21 LINK OD1 ASP C 355 ZN ZN C 503 1555 1555 2.27 LINK ZN ZN C 503 O HOH C 546 1555 1555 2.13 LINK NA NA C 504 O HOH C 544 1555 1555 2.13 LINK NA NA C 504 O HOH C 545 1555 1555 2.27 CISPEP 1 PHE A 230 PRO A 231 0 -0.13 CISPEP 2 PHE B 230 PRO B 231 0 -0.01 CISPEP 3 PHE C 230 PRO C 231 0 -0.18 SITE 1 AC1 4 HIS A 26 HIS A 28 ASP A 355 HOH A 555 SITE 1 AC2 4 HIS B 26 HIS B 28 ASP B 355 HOH B 603 SITE 1 AC3 4 HIS C 26 HIS C 28 ASP C 355 HOH C 546 SITE 1 AC4 7 GLU A 332 HOH A 553 HOH A 554 HOH B 601 SITE 2 AC4 7 HOH B 602 HOH C 544 HOH C 545 SITE 1 AC5 6 LYS A 278 GLU A 304 LYS B 278 GLU B 304 SITE 2 AC5 6 LYS C 278 GLU C 304 CRYST1 133.372 133.372 196.821 90.00 90.00 90.00 P 41 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005081 0.00000 MASTER 407 0 5 75 30 0 7 6 0 0 0 99 END