HEADER LIGAND BINDING PROTEIN 04-JUN-07 2Q61 TITLE CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN BOUND TO PARTIAL TITLE 2 AGONIST SR145 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: PPAR-GAMMA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS PROTEIN-LIGAND COMPLEX, LIGAND BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BRUNING,K.W.NETTLES REVDAT 4 18-OCT-17 2Q61 1 REMARK REVDAT 3 13-JUL-11 2Q61 1 VERSN REVDAT 2 24-FEB-09 2Q61 1 VERSN REVDAT 1 23-OCT-07 2Q61 0 JRNL AUTH J.B.BRUNING,M.J.CHALMERS,S.PRASAD,S.A.BUSBY,T.M.KAMENECKA, JRNL AUTH 2 Y.HE,K.W.NETTLES,P.R.GRIFFIN JRNL TITL PARTIAL AGONISTS ACTIVATE PPARGAMMA USING A HELIX 12 JRNL TITL 2 INDEPENDENT MECHANISM JRNL REF STRUCTURE V. 15 1258 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17937915 JRNL DOI 10.1016/J.STR.2007.07.014 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.152 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4308 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5836 ; 1.329 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 5.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;37.107 ;24.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 815 ;17.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.870 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3171 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2034 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3001 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2711 ; 0.692 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4235 ; 1.103 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1839 ; 1.917 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1585 ; 2.818 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3734 7.6056 17.8312 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0701 REMARK 3 T33: 0.1324 T12: -0.0055 REMARK 3 T13: -0.0291 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.8432 L22: 3.9225 REMARK 3 L33: 3.2358 L12: 0.5205 REMARK 3 L13: -1.2900 L23: 0.3547 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: 0.1044 S13: -0.3212 REMARK 3 S21: 0.0455 S22: -0.0720 S23: 0.2010 REMARK 3 S31: -0.1081 S32: -0.3965 S33: 0.1628 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2220 20.0405 6.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.0641 REMARK 3 T33: 0.0775 T12: -0.0915 REMARK 3 T13: -0.0142 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.6939 L22: 0.7141 REMARK 3 L33: 3.2415 L12: 0.2985 REMARK 3 L13: -1.0300 L23: 0.0645 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.1247 S13: 0.1755 REMARK 3 S21: -0.0957 S22: 0.1141 S23: -0.0244 REMARK 3 S31: -0.6783 S32: 0.2416 S33: -0.1703 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4775 14.1022 16.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.0506 REMARK 3 T33: 0.1149 T12: -0.0408 REMARK 3 T13: -0.0383 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 2.0866 L22: 0.5865 REMARK 3 L33: 4.2556 L12: 0.4648 REMARK 3 L13: -1.5497 L23: -0.7012 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.1054 S13: -0.0857 REMARK 3 S21: -0.0161 S22: -0.0355 S23: -0.1253 REMARK 3 S31: -0.3268 S32: 0.3141 S33: 0.0307 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 363 A 461 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0558 3.9081 21.4466 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.0267 REMARK 3 T33: 0.1476 T12: -0.0010 REMARK 3 T13: -0.0179 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.0579 L22: 0.6614 REMARK 3 L33: 1.3007 L12: -0.1135 REMARK 3 L13: 0.0751 L23: -0.2267 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.1023 S13: -0.2598 REMARK 3 S21: 0.0108 S22: 0.0003 S23: -0.1307 REMARK 3 S31: 0.1161 S32: 0.1905 S33: 0.0534 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 462 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3917 24.2426 24.9234 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.0180 REMARK 3 T33: 0.1353 T12: -0.0718 REMARK 3 T13: -0.1311 T23: -0.1845 REMARK 3 L TENSOR REMARK 3 L11: 12.5123 L22: 19.4895 REMARK 3 L33: 9.5786 L12: -2.2864 REMARK 3 L13: 8.4076 L23: -10.1928 REMARK 3 S TENSOR REMARK 3 S11: -0.5999 S12: -0.6336 S13: 0.9460 REMARK 3 S21: -0.1044 S22: -0.6100 S23: -0.4765 REMARK 3 S31: -1.6315 S32: 0.1927 S33: 1.2099 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 207 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4221 -20.9946 36.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.0149 REMARK 3 T33: 0.0651 T12: -0.0143 REMARK 3 T13: 0.0186 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 4.9944 L22: 4.2881 REMARK 3 L33: 3.8042 L12: 2.0481 REMARK 3 L13: -0.2591 L23: 2.2895 REMARK 3 S TENSOR REMARK 3 S11: 0.2145 S12: -0.5713 S13: -0.4004 REMARK 3 S21: 0.4389 S22: -0.2729 S23: 0.0240 REMARK 3 S31: 0.7754 S32: 0.0623 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 244 B 267 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1209 -7.3448 52.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.5501 REMARK 3 T33: 0.2837 T12: -0.3362 REMARK 3 T13: 0.1190 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 13.7474 L22: 0.9484 REMARK 3 L33: 16.4703 L12: 2.1908 REMARK 3 L13: -4.2546 L23: -3.6914 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -1.3441 S13: -1.3152 REMARK 3 S21: -0.0699 S22: -0.7062 S23: -0.8135 REMARK 3 S31: 0.7409 S32: 0.3958 S33: 0.7992 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 275 B 359 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8417 -8.6629 34.6819 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.0911 REMARK 3 T33: 0.0720 T12: -0.0179 REMARK 3 T13: 0.0299 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.9392 L22: 1.3479 REMARK 3 L33: 4.2257 L12: 0.9329 REMARK 3 L13: 0.0698 L23: 1.6323 REMARK 3 S TENSOR REMARK 3 S11: 0.2300 S12: -0.3786 S13: 0.2308 REMARK 3 S21: 0.0203 S22: -0.0660 S23: -0.0182 REMARK 3 S31: -0.1106 S32: 0.3947 S33: -0.1640 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 360 B 452 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0199 -7.8003 29.2697 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0277 REMARK 3 T33: 0.1168 T12: 0.0017 REMARK 3 T13: 0.0047 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.4895 L22: 1.7087 REMARK 3 L33: 1.8571 L12: 0.0413 REMARK 3 L13: -0.5879 L23: -0.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.0995 S12: -0.0550 S13: 0.3623 REMARK 3 S21: 0.0564 S22: -0.0747 S23: 0.1752 REMARK 3 S31: -0.0635 S32: -0.0056 S33: -0.0249 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 453 B 476 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3778 -1.0556 31.7117 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.2360 REMARK 3 T33: 0.1653 T12: -0.1251 REMARK 3 T13: -0.0320 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.6168 L22: 14.0310 REMARK 3 L33: 1.3013 L12: -1.2380 REMARK 3 L13: -1.1890 L23: 3.7614 REMARK 3 S TENSOR REMARK 3 S11: -0.1874 S12: 0.2622 S13: 0.8922 REMARK 3 S21: -0.5248 S22: 0.0583 S23: -0.4487 REMARK 3 S31: 0.5111 S32: 0.0401 S33: 0.1291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.197 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 FOR SHELL : 0.047 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 0.125M TRIS 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.06550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.06550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 SER A 208 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 SER B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 THR B 242 REMARK 465 ASP B 243 REMARK 465 THR B 268 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 260 CG OD1 OD2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 275 CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 ASP A 475 CG OD1 OD2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 GLU B 351 CG CD OE1 OE2 REMARK 470 LYS B 354 CD CE NZ REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 GLN B 454 CG CD OE1 NE2 REMARK 470 LYS B 457 CG CD CE NZ REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 ASP B 475 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 7071 O HOH A 7078 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 462 CG ASP A 462 OD1 0.160 REMARK 500 ASP A 462 CG ASP A 462 OD2 0.171 REMARK 500 LYS B 244 N LYS B 244 CA 0.156 REMARK 500 LYS B 244 CA LYS B 244 CB 0.148 REMARK 500 GLU B 460 C THR B 461 N -0.190 REMARK 500 THR B 461 C ASP B 462 N -0.239 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 210 69.31 37.24 REMARK 500 ARG A 357 140.04 -34.99 REMARK 500 THR A 461 -90.36 -104.36 REMARK 500 LYS B 240 67.31 -113.95 REMARK 500 PHE B 264 119.84 56.62 REMARK 500 SER B 342 66.98 35.67 REMARK 500 GLN B 454 31.67 -81.34 REMARK 500 VAL B 455 -45.48 -135.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF1 B 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF1 A 7001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q59 RELATED DB: PDB REMARK 900 RELATED ID: 2Q5P RELATED DB: PDB REMARK 900 RELATED ID: 2Q5S RELATED DB: PDB REMARK 900 RELATED ID: 2Q6R RELATED DB: PDB REMARK 900 RELATED ID: 2Q6S RELATED DB: PDB DBREF 2Q61 A 205 477 UNP P37231 PPARG_HUMAN 233 505 DBREF 2Q61 B 205 477 UNP P37231 PPARG_HUMAN 233 505 SEQADV 2Q61 SER A 204 UNP P37231 EXPRESSION TAG SEQADV 2Q61 SER B 204 UNP P37231 EXPRESSION TAG SEQRES 1 A 274 SER ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS SEQRES 2 A 274 HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR SEQRES 3 A 274 LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR SEQRES 4 A 274 ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU SEQRES 5 A 274 MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR SEQRES 6 A 274 PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE SEQRES 7 A 274 PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN SEQRES 8 A 274 GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL SEQRES 9 A 274 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 10 A 274 GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU SEQRES 11 A 274 MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY SEQRES 12 A 274 PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 13 A 274 PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL SEQRES 14 A 274 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA SEQRES 15 A 274 ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO SEQRES 16 A 274 GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP SEQRES 17 A 274 ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN SEQRES 18 A 274 HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN SEQRES 19 A 274 LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL SEQRES 20 A 274 GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SEQRES 21 A 274 SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU SEQRES 22 A 274 TYR SEQRES 1 B 274 SER ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS SEQRES 2 B 274 HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR SEQRES 3 B 274 LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR SEQRES 4 B 274 ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU SEQRES 5 B 274 MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR SEQRES 6 B 274 PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE SEQRES 7 B 274 PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN SEQRES 8 B 274 GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL SEQRES 9 B 274 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 10 B 274 GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU SEQRES 11 B 274 MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY SEQRES 12 B 274 PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 13 B 274 PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL SEQRES 14 B 274 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA SEQRES 15 B 274 ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO SEQRES 16 B 274 GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP SEQRES 17 B 274 ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN SEQRES 18 B 274 HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN SEQRES 19 B 274 LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL SEQRES 20 B 274 GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SEQRES 21 B 274 SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU SEQRES 22 B 274 TYR HET SF1 A7001 27 HET SF1 B5001 27 HETNAM SF1 1-BENZYL-5-CHLORO-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC HETNAM 2 SF1 ACID HETSYN SF1 SR145 FORMUL 3 SF1 2(C22 H16 CL N O2 S) FORMUL 5 HOH *156(H2 O) HELIX 1 1 ASP A 210 PHE A 226 1 17 HELIX 2 2 THR A 229 THR A 238 1 10 HELIX 3 3 ASP A 251 LYS A 261 1 11 HELIX 4 4 GLU A 276 SER A 302 1 27 HELIX 5 5 GLY A 305 LEU A 309 5 5 HELIX 6 6 ASP A 310 SER A 332 1 23 HELIX 7 7 ARG A 350 SER A 355 1 6 HELIX 8 8 MET A 364 ALA A 376 1 13 HELIX 9 9 ASP A 380 LEU A 393 1 14 HELIX 10 10 ASN A 402 HIS A 425 1 24 HELIX 11 11 GLN A 430 GLU A 460 1 31 HELIX 12 12 HIS A 466 LYS A 474 1 9 HELIX 13 13 GLU B 207 PHE B 226 1 20 HELIX 14 14 THR B 229 THR B 238 1 10 HELIX 15 15 ASP B 251 ILE B 262 1 12 HELIX 16 16 GLU B 276 SER B 302 1 27 HELIX 17 17 GLY B 305 LEU B 309 5 5 HELIX 18 18 ASP B 310 ALA B 331 1 22 HELIX 19 19 ARG B 350 SER B 355 1 6 HELIX 20 20 MET B 364 ALA B 376 1 13 HELIX 21 21 ASP B 380 LEU B 393 1 14 HELIX 22 22 ASN B 402 HIS B 425 1 24 HELIX 23 23 GLN B 430 GLU B 460 1 31 HELIX 24 24 HIS B 466 LYS B 474 1 9 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 B 4 PHE B 247 ILE B 249 0 SHEET 2 B 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 B 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 B 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS A 358 PRO A 359 0 8.76 CISPEP 2 LYS A 474 ASP A 475 0 -3.94 CISPEP 3 LYS B 358 PRO B 359 0 3.68 SITE 1 AC1 15 LEU B 255 PHE B 264 HIS B 266 ILE B 281 SITE 2 AC1 15 GLY B 284 CYS B 285 ARG B 288 LEU B 340 SITE 3 AC1 15 ILE B 341 SER B 342 MET B 348 LEU B 353 SITE 4 AC1 15 PHE B 363 HOH B5020 HOH B5056 SITE 1 AC2 14 LEU A 255 ILE A 281 GLY A 284 CYS A 285 SITE 2 AC2 14 ARG A 288 LEU A 330 LEU A 333 LEU A 340 SITE 3 AC2 14 ILE A 341 SER A 342 MET A 348 LEU A 353 SITE 4 AC2 14 PHE A 363 HOH A7026 CRYST1 90.131 62.390 117.930 90.00 100.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011095 0.000000 0.002153 0.00000 SCALE2 0.000000 0.016028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008638 0.00000 MASTER 553 0 2 24 8 0 8 6 0 0 0 44 END