HEADER TRANSFERASE 22-MAY-07 2Q0Y TITLE CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE (YP_295895.1) TITLE 2 FROM RALSTONIA EUTROPHA JMP134 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA JMP134; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 GENE: YP_295895.1, REUT_A1686; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_295895.1, ACETYLTRANSFERASE (GNAT) FAMILY, GCN5-RELATED N- KEYWDS 2 ACETYLTRANSFERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 2Q0Y 1 REMARK LINK REVDAT 5 25-OCT-17 2Q0Y 1 REMARK REVDAT 4 18-OCT-17 2Q0Y 1 REMARK REVDAT 3 13-JUL-11 2Q0Y 1 VERSN REVDAT 2 24-FEB-09 2Q0Y 1 VERSN REVDAT 1 05-JUN-07 2Q0Y 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE JRNL TITL 2 (YP_295895.1) FROM RALSTONIA EUTROPHA JMP134 AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 21936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1269 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1165 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1723 ; 1.344 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2701 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 5.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;30.257 ;22.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 204 ;11.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 178 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1434 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 266 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 253 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1116 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 603 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 700 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.237 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 81 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.046 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 828 ; 1.953 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 322 ; 0.420 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1252 ; 2.482 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 525 ; 4.491 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 464 ; 6.332 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4339 13.0085 6.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: -0.0091 REMARK 3 T33: 0.0097 T12: 0.0091 REMARK 3 T13: 0.0033 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3294 L22: 1.4445 REMARK 3 L33: 0.9816 L12: 0.1502 REMARK 3 L13: 0.0914 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0439 S13: 0.0555 REMARK 3 S21: 0.0062 S22: 0.0104 S23: 0.0755 REMARK 3 S31: -0.1129 S32: -0.0677 S33: -0.0092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. MAGNESIUM IONS, ETHYLENE GLYCOL, AND FORMIC ACID REMARK 3 MOLECULES FROM THE CRYSTALLIZATION AND CRYO SOLUTION ARE REMARK 3 MODELED INTO THE STRUCTURE. REMARK 3 5. X-RAY FLUORESCENCE AND ANOMALOUS DIFFERENCE MAPS SUPPORT REMARK 3 THE ASSIGNMENT OF A ZINC ATOM IN THE STRUCTURE. REMARK 3 6. AN UNKNOWN LIGAND (UNL) WAS MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 2Q0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.610 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MG FORMATE, 20.0% PEG REMARK 280 3350, NO BUFFER PH 5.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.45333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.22667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.22667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.45333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORT THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY-SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 13.22667 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CE REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 ARG A 16 NH1 NH2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 80 65.29 -159.85 REMARK 500 ASP A 84 44.08 -97.65 REMARK 500 ILE A 150 -83.63 -108.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 155 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 FMT A 159 O1 123.2 REMARK 620 3 CYS A 7 SG 103.8 104.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE1 REMARK 620 2 HIS A 98 NE2 95.5 REMARK 620 3 GLU A 59 OE2 52.0 147.4 REMARK 620 4 GLU A 59 OE2 25.1 119.4 28.4 REMARK 620 5 GLU A 117 OE1 124.6 120.2 84.5 102.3 REMARK 620 6 GLU A 114 OE1 108.0 110.4 84.3 103.3 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 154 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 NE2 REMARK 620 2 GLU A 145 OE2 105.7 REMARK 620 3 HOH A 365 O 131.8 100.7 REMARK 620 4 GLU A 145 OE1 61.3 47.8 144.4 REMARK 620 5 HOH A 365 O 153.8 84.3 22.9 132.0 REMARK 620 6 HOH A 364 O 90.9 75.4 57.9 93.4 67.8 REMARK 620 7 GLU A 145 OE2 112.2 100.5 101.5 100.6 89.0 156.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 371710 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH REMARK 999 TEV PROTEASE, LEAVING ONLY A GLYCINE, FOLLOWED BY REMARK 999 THE TARGET SEQUENCE. DBREF 2Q0Y A 1 152 UNP Q470Y2 Q470Y2_RALEJ 1 152 SEQADV 2Q0Y GLY A 0 UNP Q470Y2 LEADER SEQUENCE SEQADV 2Q0Y MSE A 1 UNP Q470Y2 MET 1 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 21 UNP Q470Y2 MET 21 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 35 UNP Q470Y2 MET 35 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 57 UNP Q470Y2 MET 57 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 70 UNP Q470Y2 MET 70 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 108 UNP Q470Y2 MET 108 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 130 UNP Q470Y2 MET 130 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 138 UNP Q470Y2 MET 138 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 146 UNP Q470Y2 MET 146 MODIFIED RESIDUE SEQRES 1 A 153 GLY MSE GLU CYS ARG PRO LEU CYS ILE ASP ASP LEU GLU SEQRES 2 A 153 LEU VAL CYS ARG HIS ARG GLU ALA MSE PHE ARG GLU ALA SEQRES 3 A 153 GLY ARG ASP ALA LEU THR LEU ALA ALA MSE GLN ASP PRO SEQRES 4 A 153 PHE ARG ASP TRP LEU LEU PRO ARG LEU ALA ASP GLY SER SEQRES 5 A 153 TYR PHE GLY TRP VAL MSE GLU GLU GLY GLY ALA PRO LEU SEQRES 6 A 153 ALA GLY ILE GLY LEU MSE VAL ILE GLU TRP PRO PRO HIS SEQRES 7 A 153 PRO SER HIS PRO LEU GLN ASP LYS ARG GLY TYR ILE LEU SEQRES 8 A 153 ASN LEU TYR VAL ASP PRO SER HIS ARG GLU ARG GLY ILE SEQRES 9 A 153 GLY GLN ALA LEU MSE ASN ARG ALA GLU ALA GLU PHE ALA SEQRES 10 A 153 GLU ARG GLY ILE ALA PHE ALA VAL LEU HIS ALA THR GLU SEQRES 11 A 153 MSE GLY GLN PRO LEU TYR ALA ARG MSE GLY TRP SER PRO SEQRES 12 A 153 THR THR GLU MSE SER LYS PRO ILE ALA GLY MODRES 2Q0Y MSE A 1 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 21 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 35 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 57 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 70 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 108 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 130 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 138 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 146 MET SELENOMETHIONINE HET MSE A 1 11 HET MSE A 21 8 HET MSE A 35 8 HET MSE A 57 8 HET MSE A 70 8 HET MSE A 108 8 HET MSE A 130 8 HET MSE A 138 8 HET MSE A 146 8 HET ZN A 153 1 HET MG A 154 1 HET MG A 155 1 HET UNL A 156 4 HET EDO A 157 4 HET FMT A 158 3 HET FMT A 159 3 HET FMT A 160 3 HET FMT A 161 3 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 MG 2(MG 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 FMT 4(C H2 O2) FORMUL 11 HOH *206(H2 O) HELIX 1 1 CYS A 7 ASP A 9 5 3 HELIX 2 2 ASP A 10 ALA A 25 1 16 HELIX 3 3 ASP A 28 ASP A 49 1 22 HELIX 4 4 PRO A 96 ARG A 99 5 4 HELIX 5 5 GLY A 102 ARG A 118 1 17 HELIX 6 6 GLY A 131 MSE A 138 1 8 SHEET 1 A 5 MSE A 1 PRO A 5 0 SHEET 2 A 5 PHE A 53 GLU A 59 -1 O GLU A 58 N GLU A 2 SHEET 3 A 5 ALA A 62 GLU A 73 -1 O LEU A 64 N MSE A 57 SHEET 4 A 5 LYS A 85 VAL A 94 -1 O ARG A 86 N ILE A 72 SHEET 5 A 5 ALA A 123 LEU A 125 1 O VAL A 124 N GLY A 87 LINK OD2 ASP A 9 MG MG A 155 1555 1555 2.36 LINK OE1AGLU A 59 ZN ZN A 153 1555 1555 2.13 LINK NE2 HIS A 98 ZN ZN A 153 1555 1555 1.99 LINK NE2 HIS A 126 MG MG A 154 1555 1555 2.38 LINK OE2 GLU A 145 MG MG A 154 1555 1555 2.15 LINK MG MG A 154 O HOH A 365 1555 1555 2.13 LINK MG MG A 155 O1 FMT A 159 1555 1555 2.05 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C ALA A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N PHE A 22 1555 1555 1.33 LINK C ALA A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N GLN A 36 1555 1555 1.33 LINK C VAL A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N GLU A 58 1555 1555 1.33 LINK C LEU A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N VAL A 71 1555 1555 1.32 LINK C LEU A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N ASN A 109 1555 1555 1.33 LINK C GLU A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N GLY A 131 1555 1555 1.34 LINK C ARG A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N GLY A 139 1555 1555 1.33 LINK C GLU A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N SER A 147 1555 1555 1.33 LINK ZN ZN A 153 OE2AGLU A 59 1555 1555 2.73 LINK ZN ZN A 153 OE2BGLU A 59 1555 1555 1.69 LINK MG MG A 154 OE1 GLU A 145 1555 1555 2.93 LINK MG MG A 155 SG CYS A 7 1555 1555 2.58 LINK ZN ZN A 153 OE1 GLU A 117 1555 3665 1.97 LINK ZN ZN A 153 OE1 GLU A 114 1555 3665 1.98 LINK MG MG A 154 O HOH A 365 1555 5555 2.63 LINK MG MG A 154 O HOH A 364 1555 5555 2.66 LINK MG MG A 154 OE2 GLU A 145 1555 5555 2.04 SITE 1 AC1 4 GLU A 59 HIS A 98 GLU A 114 GLU A 117 SITE 1 AC2 4 HIS A 126 GLU A 145 HOH A 364 HOH A 365 SITE 1 AC3 3 CYS A 7 ASP A 9 FMT A 159 SITE 1 AC4 7 LEU A 90 ASN A 91 LEU A 92 HIS A 126 SITE 2 AC4 7 THR A 128 TYR A 135 HOH A 325 SITE 1 AC5 9 ARG A 99 GLY A 102 ILE A 103 GLY A 104 SITE 2 AC5 9 HOH A 165 HOH A 181 HOH A 186 HOH A 258 SITE 3 AC5 9 HOH A 331 SITE 1 AC6 6 ARG A 18 TRP A 74 PRO A 75 HIS A 77 SITE 2 AC6 6 TYR A 88 HOH A 315 SITE 1 AC7 5 CYS A 7 ARG A 16 ARG A 23 MG A 155 SITE 2 AC7 5 HOH A 239 SITE 1 AC8 6 LEU A 82 GLN A 83 LYS A 85 ARG A 118 SITE 2 AC8 6 GLY A 119 HOH A 352 SITE 1 AC9 1 ASP A 41 CRYST1 102.520 102.520 39.680 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009754 0.005632 0.000000 0.00000 SCALE2 0.000000 0.011263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025202 0.00000 MASTER 398 0 18 6 5 0 15 6 0 0 0 12 END