HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-MAY-07 2Q03 TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_563039.1) FROM TITLE 2 SHEWANELLA DENITRIFICANS OS217 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS OS217; SOURCE 3 ORGANISM_TAXID: 318161; SOURCE 4 STRAIN: OS217, DSM 15013; SOURCE 5 ATCC: BAA-1090; SOURCE 6 GENE: YP_563039.1, SDEN_2034; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_563039.1, UNCHARACTERIZED PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 2Q03 1 REMARK LINK REVDAT 5 25-OCT-17 2Q03 1 REMARK REVDAT 4 18-OCT-17 2Q03 1 REMARK REVDAT 3 13-JUL-11 2Q03 1 VERSN REVDAT 2 24-FEB-09 2Q03 1 VERSN REVDAT 1 29-MAY-07 2Q03 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_563039.1) JRNL TITL 2 FROM SHEWANELLA DENITRIFICANS OS217 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2187 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1863 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2973 ; 1.783 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4331 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 4.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;32.989 ;25.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;11.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;13.671 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 478 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 306 ; 0.168 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1849 ; 0.172 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1021 ; 0.180 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1429 ; 0.088 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.212 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.106 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 20 ; 0.150 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.259 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.013 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 2.321 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 586 ; 0.507 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2192 ; 3.303 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 885 ; 5.539 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 781 ; 8.185 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5910 14.9110 4.0960 REMARK 3 T TENSOR REMARK 3 T11: -0.1143 T22: -0.0937 REMARK 3 T33: -0.0547 T12: 0.0390 REMARK 3 T13: 0.0141 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 1.7551 L22: 3.3636 REMARK 3 L33: 1.0186 L12: -1.5802 REMARK 3 L13: -0.3702 L23: -0.6308 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.1515 S13: -0.3282 REMARK 3 S21: -0.0296 S22: 0.0371 S23: -0.1064 REMARK 3 S31: 0.0192 S32: -0.0547 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9880 35.0590 9.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0052 REMARK 3 T33: -0.1900 T12: 0.1098 REMARK 3 T13: -0.0062 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.2009 L22: 4.6173 REMARK 3 L33: 0.5817 L12: -1.9071 REMARK 3 L13: -0.3934 L23: 0.1757 REMARK 3 S TENSOR REMARK 3 S11: -0.1381 S12: -0.3411 S13: 0.0468 REMARK 3 S21: 0.4680 S22: 0.1663 S23: -0.1089 REMARK 3 S31: -0.1431 S32: -0.1291 S33: -0.0282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. TWO GLYCEROL MOLECULES ARE MODELED IN THE STRUCTURE. REMARK 3 5. RESIDUES 1 TO 4 IN SUBUNIT A AND B, RESIDUES 156 AND 137 IN REMARK 3 SUBUNIT B ARE REMARK 3 DISORDERED AND NOT MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 2Q03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.61 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97926, 0.97904 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 15.9% ETHANOL, 0.2M REMARK 280 MAGNESIUM CHLORIDE, 0.1M HEPES PH 7.61, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.73500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.91500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.36750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.91500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.10250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 11.36750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.10250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 MSE A 3 REMARK 465 LYS A 4 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 MSE B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 136 REMARK 465 SER B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 7 CD1 CD2 REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 80 CE NZ REMARK 470 GLU A 104 CD OE1 OE2 REMARK 470 LYS A 117 CE NZ REMARK 470 SER A 137 OG REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLN B 8 CG CD OE1 NE2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 GLN B 47 CD OE1 NE2 REMARK 470 LYS B 79 CE NZ REMARK 470 LYS B 80 CE NZ REMARK 470 GLU B 104 CD OE1 OE2 REMARK 470 LYS B 117 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 13 CG - SE - CE ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 123 -92.66 -112.28 REMARK 500 THR B 123 -102.10 -115.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 138 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372600 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2Q03 A 1 137 UNP Q12ML0 Q12ML0_SHEDO 1 137 DBREF 2Q03 B 1 137 UNP Q12ML0 Q12ML0_SHEDO 1 137 SEQADV 2Q03 GLY A 0 UNP Q12ML0 LEADER SEQUENCE SEQADV 2Q03 MSE A 1 UNP Q12ML0 MET 1 MODIFIED RESIDUE SEQADV 2Q03 MSE A 3 UNP Q12ML0 MET 3 MODIFIED RESIDUE SEQADV 2Q03 MSE A 13 UNP Q12ML0 MET 13 MODIFIED RESIDUE SEQADV 2Q03 MSE A 56 UNP Q12ML0 MET 56 MODIFIED RESIDUE SEQADV 2Q03 GLY B 0 UNP Q12ML0 LEADER SEQUENCE SEQADV 2Q03 MSE B 1 UNP Q12ML0 MET 1 MODIFIED RESIDUE SEQADV 2Q03 MSE B 3 UNP Q12ML0 MET 3 MODIFIED RESIDUE SEQADV 2Q03 MSE B 13 UNP Q12ML0 MET 13 MODIFIED RESIDUE SEQADV 2Q03 MSE B 56 UNP Q12ML0 MET 56 MODIFIED RESIDUE SEQRES 1 A 138 GLY MSE ASP MSE LYS THR LYS LEU GLN THR ILE ILE GLY SEQRES 2 A 138 MSE PHE GLN ILE THR ALA TRP ASP GLU THR SER TYR PHE SEQRES 3 A 138 GLU SER ASP ASN GLY ALA LYS LEU THR GLN ALA VAL ILE SEQRES 4 A 138 THR GLN SER TYR GLN GLY VAL LEU GLN GLY HIS SER GLU SEQRES 5 A 138 ILE ARG TYR LEU MSE SER TYR GLN ASP ASN ALA ASN ALA SEQRES 6 A 138 THR PHE VAL GLY PHE GLU HIS PHE THR GLY SER LEU GLY SEQRES 7 A 138 ASP LYS LYS GLY SER PHE ILE LEU GLN HIS LYS GLY LEU SEQRES 8 A 138 PHE ALA ALA GLY VAL ALA SER SER GLU PHE GLU LEU VAL SEQRES 9 A 138 GLU ARG SER ALA THR GLY ASP PHE VAL HIS LEU VAL GLY SEQRES 10 A 138 LYS GLY HIS PHE VAL SER THR GLU ASN GLY GLN ALA ASN SEQRES 11 A 138 TYR GLN ILE THR LEU GLN ASP SER SEQRES 1 B 138 GLY MSE ASP MSE LYS THR LYS LEU GLN THR ILE ILE GLY SEQRES 2 B 138 MSE PHE GLN ILE THR ALA TRP ASP GLU THR SER TYR PHE SEQRES 3 B 138 GLU SER ASP ASN GLY ALA LYS LEU THR GLN ALA VAL ILE SEQRES 4 B 138 THR GLN SER TYR GLN GLY VAL LEU GLN GLY HIS SER GLU SEQRES 5 B 138 ILE ARG TYR LEU MSE SER TYR GLN ASP ASN ALA ASN ALA SEQRES 6 B 138 THR PHE VAL GLY PHE GLU HIS PHE THR GLY SER LEU GLY SEQRES 7 B 138 ASP LYS LYS GLY SER PHE ILE LEU GLN HIS LYS GLY LEU SEQRES 8 B 138 PHE ALA ALA GLY VAL ALA SER SER GLU PHE GLU LEU VAL SEQRES 9 B 138 GLU ARG SER ALA THR GLY ASP PHE VAL HIS LEU VAL GLY SEQRES 10 B 138 LYS GLY HIS PHE VAL SER THR GLU ASN GLY GLN ALA ASN SEQRES 11 B 138 TYR GLN ILE THR LEU GLN ASP SER MODRES 2Q03 MSE A 13 MET SELENOMETHIONINE MODRES 2Q03 MSE A 56 MET SELENOMETHIONINE MODRES 2Q03 MSE B 13 MET SELENOMETHIONINE MODRES 2Q03 MSE B 56 MET SELENOMETHIONINE HET MSE A 13 16 HET MSE A 56 8 HET MSE B 13 16 HET MSE B 56 8 HET GOL A 138 6 HET GOL B 138 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *246(H2 O) SHEET 1 A10 THR A 108 GLY A 109 0 SHEET 2 A10 LYS A 79 ALA A 92 -1 N SER A 82 O THR A 108 SHEET 3 A10 VAL A 95 LEU A 102 -1 O GLU A 101 N GLN A 86 SHEET 4 A10 LEU A 114 SER A 122 -1 O SER A 122 N ALA A 96 SHEET 5 A10 GLN A 127 ASP A 136 -1 O THR A 133 N LYS A 117 SHEET 6 A10 LEU A 7 GLU A 26 -1 N GLN A 8 O LEU A 134 SHEET 7 A10 LYS A 32 TYR A 42 -1 O LEU A 33 N TYR A 24 SHEET 8 A10 LEU A 46 ASP A 60 -1 O ILE A 52 N ILE A 38 SHEET 9 A10 ASN A 63 LEU A 76 -1 O THR A 65 N SER A 57 SHEET 10 A10 LYS A 79 ALA A 92 -1 O GLY A 89 N PHE A 66 SHEET 1 B10 THR B 108 GLY B 109 0 SHEET 2 B10 LYS B 79 ALA B 92 -1 N SER B 82 O THR B 108 SHEET 3 B10 VAL B 95 LEU B 102 -1 O GLU B 101 N GLN B 86 SHEET 4 B10 VAL B 115 SER B 122 -1 O SER B 122 N ALA B 96 SHEET 5 B10 GLN B 127 GLN B 135 -1 O THR B 133 N LYS B 117 SHEET 6 B10 GLN B 8 GLU B 26 -1 N GLY B 12 O TYR B 130 SHEET 7 B10 LYS B 32 TYR B 42 -1 O LEU B 33 N TYR B 24 SHEET 8 B10 LEU B 46 ASP B 60 -1 O ILE B 52 N ILE B 38 SHEET 9 B10 ASN B 63 LEU B 76 -1 O SER B 75 N GLN B 47 SHEET 10 B10 LYS B 79 ALA B 92 -1 O GLY B 89 N PHE B 66 LINK C GLY A 12 N AMSE A 13 1555 1555 1.33 LINK C GLY A 12 N BMSE A 13 1555 1555 1.32 LINK C AMSE A 13 N PHE A 14 1555 1555 1.33 LINK C BMSE A 13 N PHE A 14 1555 1555 1.34 LINK C LEU A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N SER A 57 1555 1555 1.33 LINK C GLY B 12 N BMSE B 13 1555 1555 1.33 LINK C GLY B 12 N AMSE B 13 1555 1555 1.33 LINK C BMSE B 13 N PHE B 14 1555 1555 1.35 LINK C AMSE B 13 N PHE B 14 1555 1555 1.32 LINK C LEU B 55 N MSE B 56 1555 1555 1.34 LINK C MSE B 56 N SER B 57 1555 1555 1.33 SITE 1 AC1 6 GLU B 99 LYS B 117 GLY B 118 HIS B 119 SITE 2 AC1 6 GLN B 131 THR B 133 SITE 1 AC2 7 GLU A 99 LYS A 117 GLY A 118 HIS A 119 SITE 2 AC2 7 GLN A 131 THR A 133 HOH A 178 CRYST1 145.830 145.830 45.470 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021993 0.00000 MASTER 403 0 6 0 20 0 4 6 0 0 0 22 END