HEADER CHAPERONE 15-MAY-07 2PY8 TITLE RBCX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RBCX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC6803; SOURCE 5 GENE: RBCX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ALL HELICAL FOLD, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,M.R.SAWAYA,C.A.KERFELD,T.O.YEATES REVDAT 4 18-OCT-17 2PY8 1 REMARK REVDAT 3 13-JUL-11 2PY8 1 VERSN REVDAT 2 24-FEB-09 2PY8 1 VERSN REVDAT 1 09-OCT-07 2PY8 0 JRNL AUTH S.TANAKA,M.R.SAWAYA,C.A.KERFELD,T.O.YEATES JRNL TITL STRUCTURE OF THE RUBISCO CHAPERONE RBCX FROM SYNECHOCYSTIS JRNL TITL 2 SP. PCC6803. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1109 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17881829 JRNL DOI 10.1107/S090744490704228X REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1995 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 62.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3792 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2542 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5131 ; 1.137 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6225 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 4.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;36.812 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;17.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;12.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4118 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 712 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 967 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2419 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1832 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2013 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 97 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2498 ; 3.677 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 914 ; 1.047 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3727 ; 4.739 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 3.821 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 5.366 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5860 41.2290 48.2350 REMARK 3 T TENSOR REMARK 3 T11: -0.1963 T22: -0.2172 REMARK 3 T33: -0.4050 T12: -0.0251 REMARK 3 T13: 0.0286 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 2.6217 L22: 2.5295 REMARK 3 L33: 5.3267 L12: -2.3533 REMARK 3 L13: -3.7291 L23: 3.2501 REMARK 3 S TENSOR REMARK 3 S11: -0.3804 S12: 0.0851 S13: -0.1723 REMARK 3 S21: 0.5329 S22: 0.1989 S23: 0.0420 REMARK 3 S31: 0.6128 S32: 0.3655 S33: 0.1815 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9620 91.2230 61.0160 REMARK 3 T TENSOR REMARK 3 T11: -0.3124 T22: -0.1179 REMARK 3 T33: -0.3982 T12: 0.0777 REMARK 3 T13: 0.0553 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 6.4833 L22: 1.2008 REMARK 3 L33: 1.7335 L12: 0.7559 REMARK 3 L13: 1.2735 L23: -0.1003 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.3221 S13: -0.4609 REMARK 3 S21: 0.0680 S22: 0.0906 S23: -0.0349 REMARK 3 S31: 0.1963 S32: 0.1317 S33: -0.0903 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 123 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6390 99.3340 61.8520 REMARK 3 T TENSOR REMARK 3 T11: -0.3133 T22: -0.1984 REMARK 3 T33: -0.3503 T12: 0.0823 REMARK 3 T13: 0.0127 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 3.5076 L22: 0.9132 REMARK 3 L33: 1.2279 L12: 0.3762 REMARK 3 L13: 0.5340 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: 0.4522 S13: 0.4116 REMARK 3 S21: 0.0642 S22: 0.0911 S23: 0.1434 REMARK 3 S31: -0.0833 S32: -0.0065 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 104 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1880 62.2550 42.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: -0.2289 REMARK 3 T33: -0.2430 T12: -0.1630 REMARK 3 T13: 0.3281 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 6.7978 L22: 5.9986 REMARK 3 L33: 10.5164 L12: -1.5683 REMARK 3 L13: 2.0540 L23: -1.2386 REMARK 3 S TENSOR REMARK 3 S11: 0.1954 S12: 0.1844 S13: 1.1206 REMARK 3 S21: -0.5790 S22: 0.2939 S23: -0.5265 REMARK 3 S31: -1.3151 S32: 0.1367 S33: -0.4893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947,0.97969,0.97182 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M POTASSIUM/SODIUM REMARK 280 PHOSPHATE, 0.2M LITHIUM SULFATE, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.37100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.91600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.55650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.91600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.18550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.91600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.55650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.91600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.18550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.37100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CHAIN B AND CHAIN C FORM A DIMER, AND THE CHAIN A AND REMARK 300 CHAIN D FORM ANOTHER DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 92.74200 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 92.74200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 122 REMARK 465 THR A 123 REMARK 465 SER A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 GLU A 127 REMARK 465 SER A 128 REMARK 465 ASN A 129 REMARK 465 ASN A 130 REMARK 465 ASN A 131 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 PRO A 134 REMARK 465 PRO A 135 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 ALA A 139 REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 MET B 1 REMARK 465 VAL B 116 REMARK 465 ASP B 117 REMARK 465 ASN B 118 REMARK 465 PHE B 119 REMARK 465 PRO B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 THR B 123 REMARK 465 SER B 124 REMARK 465 ASN B 125 REMARK 465 GLY B 126 REMARK 465 GLU B 127 REMARK 465 SER B 128 REMARK 465 ASN B 129 REMARK 465 ASN B 130 REMARK 465 ASN B 131 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 PRO B 134 REMARK 465 PRO B 135 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 ALA B 139 REMARK 465 LEU B 140 REMARK 465 GLU B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 MET C 1 REMARK 465 ASN C 125 REMARK 465 GLY C 126 REMARK 465 GLU C 127 REMARK 465 SER C 128 REMARK 465 ASN C 129 REMARK 465 ASN C 130 REMARK 465 ASN C 131 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 PRO C 134 REMARK 465 PRO C 135 REMARK 465 SER C 136 REMARK 465 ALA C 137 REMARK 465 ALA C 138 REMARK 465 ALA C 139 REMARK 465 LEU C 140 REMARK 465 GLU C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 MET D 1 REMARK 465 LEU D 105 REMARK 465 LEU D 106 REMARK 465 GLU D 107 REMARK 465 ARG D 108 REMARK 465 LEU D 109 REMARK 465 THR D 110 REMARK 465 ARG D 111 REMARK 465 THR D 112 REMARK 465 VAL D 113 REMARK 465 ALA D 114 REMARK 465 GLU D 115 REMARK 465 VAL D 116 REMARK 465 ASP D 117 REMARK 465 ASN D 118 REMARK 465 PHE D 119 REMARK 465 PRO D 120 REMARK 465 SER D 121 REMARK 465 GLU D 122 REMARK 465 THR D 123 REMARK 465 SER D 124 REMARK 465 ASN D 125 REMARK 465 GLY D 126 REMARK 465 GLU D 127 REMARK 465 SER D 128 REMARK 465 ASN D 129 REMARK 465 ASN D 130 REMARK 465 ASN D 131 REMARK 465 ASP D 132 REMARK 465 SER D 133 REMARK 465 PRO D 134 REMARK 465 PRO D 135 REMARK 465 SER D 136 REMARK 465 ALA D 137 REMARK 465 ALA D 138 REMARK 465 ALA D 139 REMARK 465 LEU D 140 REMARK 465 GLU D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 84 CG ASP B 84 OD2 0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 71.83 -154.82 REMARK 500 ASN B 64 83.57 -153.45 REMARK 500 ASN C 34 72.32 -159.36 REMARK 500 LEU D 61 13.28 -69.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 B 602 REMARK 610 PE4 C 601 REMARK 610 PE4 D 603 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 D 603 DBREF 2PY8 A 1 136 UNP Q55670 Q55670_SYNY3 3 138 DBREF 2PY8 B 1 136 UNP Q55670 Q55670_SYNY3 3 138 DBREF 2PY8 C 1 136 UNP Q55670 Q55670_SYNY3 3 138 DBREF 2PY8 D 1 136 UNP Q55670 Q55670_SYNY3 3 138 SEQADV 2PY8 ALA A 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA A 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA A 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU A 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU A 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 147 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA B 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA B 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA B 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU B 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU B 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 147 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA C 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA C 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA C 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU C 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU C 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 147 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA D 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA D 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA D 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU D 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU D 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 147 UNP Q55670 EXPRESSION TAG SEQRES 1 A 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 A 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 A 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 A 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 A 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 A 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 A 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 A 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 A 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 A 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 A 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 A 147 HIS HIS HIS HIS SEQRES 1 B 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 B 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 B 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 B 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 B 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 B 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 B 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 B 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 B 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 B 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 B 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 B 147 HIS HIS HIS HIS SEQRES 1 C 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 C 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 C 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 C 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 C 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 C 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 C 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 C 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 C 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 C 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 C 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 C 147 HIS HIS HIS HIS SEQRES 1 D 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 D 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 D 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 D 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 D 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 D 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 D 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 D 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 D 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 D 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 D 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 D 147 HIS HIS HIS HIS HET CL A 500 1 HET PE4 B 602 16 HET PE4 C 601 22 HET PE4 D 603 15 HETNAM CL CHLORIDE ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 5 CL CL 1- FORMUL 6 PE4 3(C16 H34 O8) FORMUL 9 HOH *87(H2 O) HELIX 1 1 GLN A 2 ASN A 34 1 33 HELIX 2 2 ASN A 34 HIS A 48 1 15 HELIX 3 3 ASN A 52 ASP A 62 1 11 HELIX 4 4 ASN A 64 LEU A 83 1 20 HELIX 5 5 PHE A 85 ASN A 118 1 34 HELIX 6 6 GLN B 2 GLY B 31 1 30 HELIX 7 7 ASN B 34 HIS B 48 1 15 HELIX 8 8 ASN B 52 ASP B 62 1 11 HELIX 9 9 ASN B 64 LEU B 83 1 20 HELIX 10 10 PHE B 85 GLU B 115 1 31 HELIX 11 11 GLN C 2 ASN C 34 1 33 HELIX 12 12 ASN C 34 HIS C 48 1 15 HELIX 13 13 ASN C 52 LEU C 61 1 10 HELIX 14 14 ASN C 64 LEU C 83 1 20 HELIX 15 15 PHE C 85 ASN C 118 1 34 HELIX 16 16 GLN D 2 ASN D 34 1 33 HELIX 17 17 ASN D 34 HIS D 48 1 15 HELIX 18 18 ASN D 52 LEU D 61 1 10 HELIX 19 19 ASN D 64 LEU D 83 1 20 HELIX 20 20 PHE D 85 ARG D 102 1 18 CISPEP 1 PHE A 119 PRO A 120 0 -6.16 CISPEP 2 PHE C 119 PRO C 120 0 -4.27 SITE 1 AC1 3 ARG A 108 THR A 112 THR C 112 SITE 1 AC2 10 VAL B 13 PE4 B 602 VAL C 13 TYR C 17 SITE 2 AC2 10 TYR C 20 ILE C 50 GLN C 51 HOH C 621 SITE 3 AC2 10 HOH C 632 HOH C 633 SITE 1 AC3 8 VAL B 13 SER B 16 TYR B 17 TYR B 20 SITE 2 AC3 8 ILE B 50 GLN B 51 PE4 C 601 HOH C 632 SITE 1 AC4 5 TYR A 17 TYR A 20 GLN A 51 TYR D 20 SITE 2 AC4 5 GLN D 51 CRYST1 129.832 129.832 92.742 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010783 0.00000 MASTER 569 0 4 20 0 0 8 6 0 0 0 48 END