HEADER TRANSFERASE 14-MAY-07 2PX6 TITLE CRYSTAL STRUCTURE OF THE THIOESTERASE DOMAIN OF HUMAN FATTY TITLE 2 ACID SYNTHASE INHIBITED BY ORLISTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2200-2511; COMPND 5 EC: 2.3.1.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS THIOESATERSE DOMAIN, ORLISTAT, FATTY ACID SYNTHASE, DRUG KEYWDS 2 COMPLEX, TETRAHYDROLIPSTATIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.PEMBLE IV,L.C.JOHNSON,S.J.KRIDEL,W.T.LOWTHER REVDAT 3 24-FEB-09 2PX6 1 VERSN REVDAT 2 14-AUG-07 2PX6 1 AUTHOR JRNL REVDAT 1 10-JUL-07 2PX6 0 JRNL AUTH C.W.PEMBLE,L.C.JOHNSON,S.J.KRIDEL,W.T.LOWTHER JRNL TITL CRYSTAL STRUCTURE OF THE THIOESTERASE DOMAIN OF JRNL TITL 2 HUMAN FATTY ACID SYNTHASE INHIBITED BY ORLISTAT. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 704 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17618296 JRNL DOI 10.1038/NSMB1265 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 21850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.474 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.796 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4176 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5641 ; 1.273 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 5.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;35.008 ;23.622 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;17.322 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3123 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1914 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2844 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 169 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2646 ; 0.661 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4123 ; 1.093 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1707 ; 1.475 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1518 ; 2.370 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PX6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB042877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21850 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XKT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM DIHYDROGEN PHOSPHATE, REMARK 280 30-35% PEG 3350, 30MM DITHIOTHREITOL, PH 4.3, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.16000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH CHAIN REPRESENTS THE BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2196 REMARK 465 SER A 2197 REMARK 465 HIS A 2198 REMARK 465 ASN A 2199 REMARK 465 LEU A 2200 REMARK 465 ALA A 2201 REMARK 465 CYS A 2202 REMARK 465 PRO A 2203 REMARK 465 THR A 2204 REMARK 465 PRO A 2205 REMARK 465 LYS A 2206 REMARK 465 GLU A 2207 REMARK 465 ASP A 2208 REMARK 465 GLY A 2209 REMARK 465 LEU A 2210 REMARK 465 ALA A 2211 REMARK 465 GLN A 2212 REMARK 465 GLN A 2213 REMARK 465 GLN A 2214 REMARK 465 THR A 2215 REMARK 465 GLN A 2216 REMARK 465 LEU A 2217 REMARK 465 ASN A 2218 REMARK 465 LEU A 2219 REMARK 465 ARG A 2220 REMARK 465 SER A 2326 REMARK 465 PRO A 2327 REMARK 465 ALA A 2328 REMARK 465 VAL A 2344 REMARK 465 LEU A 2345 REMARK 465 ALA A 2346 REMARK 465 TYR A 2347 REMARK 465 THR A 2348 REMARK 465 GLN A 2349 REMARK 465 SER A 2350 REMARK 465 TYR A 2351 REMARK 465 ARG A 2352 REMARK 465 ALA A 2353 REMARK 465 LYS A 2354 REMARK 465 LEU A 2355 REMARK 465 THR A 2356 REMARK 465 PRO A 2357 REMARK 465 GLY A 2358 REMARK 465 CYS A 2359 REMARK 465 GLU A 2360 REMARK 465 GLY A 2451 REMARK 465 GLY A 2452 REMARK 465 ALA A 2453 REMARK 465 TYR A 2454 REMARK 465 GLY A 2455 REMARK 465 GLU A 2456 REMARK 465 ASP A 2457 REMARK 465 LEU A 2458 REMARK 465 ALA A 2502 REMARK 465 GLU A 2503 REMARK 465 PRO A 2504 REMARK 465 ARG A 2505 REMARK 465 VAL A 2506 REMARK 465 SER A 2507 REMARK 465 VAL A 2508 REMARK 465 ARG A 2509 REMARK 465 GLU A 2510 REMARK 465 GLY A 2511 REMARK 465 GLY B 2196 REMARK 465 SER B 2197 REMARK 465 HIS B 2198 REMARK 465 ASN B 2199 REMARK 465 LEU B 2200 REMARK 465 ALA B 2201 REMARK 465 CYS B 2202 REMARK 465 PRO B 2203 REMARK 465 THR B 2204 REMARK 465 PRO B 2205 REMARK 465 LYS B 2206 REMARK 465 GLU B 2207 REMARK 465 ASP B 2208 REMARK 465 GLY B 2209 REMARK 465 LEU B 2210 REMARK 465 ALA B 2211 REMARK 465 GLN B 2212 REMARK 465 GLN B 2213 REMARK 465 GLN B 2214 REMARK 465 THR B 2215 REMARK 465 GLN B 2216 REMARK 465 LEU B 2217 REMARK 465 ASN B 2218 REMARK 465 LEU B 2219 REMARK 465 ARG B 2220 REMARK 465 VAL B 2344 REMARK 465 LEU B 2345 REMARK 465 ALA B 2346 REMARK 465 TYR B 2347 REMARK 465 THR B 2348 REMARK 465 GLN B 2349 REMARK 465 SER B 2350 REMARK 465 TYR B 2351 REMARK 465 ARG B 2352 REMARK 465 ALA B 2353 REMARK 465 LYS B 2354 REMARK 465 LEU B 2355 REMARK 465 THR B 2356 REMARK 465 PRO B 2357 REMARK 465 GLY B 2358 REMARK 465 CYS B 2359 REMARK 465 ALA B 2453 REMARK 465 TYR B 2454 REMARK 465 GLY B 2455 REMARK 465 GLU B 2456 REMARK 465 ASP B 2457 REMARK 465 LEU B 2458 REMARK 465 GLY B 2459 REMARK 465 ALA B 2460 REMARK 465 VAL B 2508 REMARK 465 ARG B 2509 REMARK 465 GLU B 2510 REMARK 465 GLY B 2511 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 2428 OD1 ASP B 2291 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A2440 C GLY A2441 N -0.399 REMARK 500 HIS B2440 CA HIS B2440 CB -0.191 REMARK 500 HIS B2440 C HIS B2440 O -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A2307 CA - C - N ANGL. DEV. = 16.4 DEGREES REMARK 500 TYR A2307 O - C - N ANGL. DEV. = -17.5 DEGREES REMARK 500 SER A2308 C - N - CA ANGL. DEV. = 26.2 DEGREES REMARK 500 SER A2308 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A2248 156.50 -45.66 REMARK 500 SER A2308 -94.32 60.89 REMARK 500 ASP A2338 56.65 39.90 REMARK 500 PRO A2341 56.75 -48.33 REMARK 500 LYS A2471 98.57 -48.82 REMARK 500 HIS B2248 151.45 -48.15 REMARK 500 THR B2274 -166.83 -106.21 REMARK 500 SER B2308 -111.26 60.78 REMARK 500 LYS B2391 -87.55 -85.21 REMARK 500 THR B2450 45.28 -94.38 REMARK 500 ASN B2463 -14.77 74.90 REMARK 500 SER B2465 -16.58 66.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A2308 -11.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 DH9 3000 FORMS AN ADDUCT WITH SER 2308 AND IS MISSING REMARK 600 THE O2* ATOM REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DH9 A 3000 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DH9 B 61 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 71 DBREF 2PX6 A 2200 2511 UNP P49327 FAS_HUMAN 2200 2511 DBREF 2PX6 B 2200 2511 UNP P49327 FAS_HUMAN 2200 2511 SEQADV 2PX6 GLY A 2196 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 SER A 2197 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 HIS A 2198 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 ASN A 2199 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 GLY B 2196 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 SER B 2197 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 HIS B 2198 UNP P49327 CLONING ARTIFACT SEQADV 2PX6 ASN B 2199 UNP P49327 CLONING ARTIFACT SEQRES 1 A 316 GLY SER HIS ASN LEU ALA CYS PRO THR PRO LYS GLU ASP SEQRES 2 A 316 GLY LEU ALA GLN GLN GLN THR GLN LEU ASN LEU ARG SER SEQRES 3 A 316 LEU LEU VAL ASN PRO GLU GLY PRO THR LEU MET ARG LEU SEQRES 4 A 316 ASN SER VAL GLN SER SER GLU ARG PRO LEU PHE LEU VAL SEQRES 5 A 316 HIS PRO ILE GLU GLY SER THR THR VAL PHE HIS SER LEU SEQRES 6 A 316 ALA SER ARG LEU SER ILE PRO THR TYR GLY LEU GLN CYS SEQRES 7 A 316 THR ARG ALA ALA PRO LEU ASP SER ILE HIS SER LEU ALA SEQRES 8 A 316 ALA TYR TYR ILE ASP CYS ILE ARG GLN VAL GLN PRO GLU SEQRES 9 A 316 GLY PRO TYR ARG VAL ALA GLY TYR SER TYR GLY ALA CYS SEQRES 10 A 316 VAL ALA PHE GLU MET CYS SER GLN LEU GLN ALA GLN GLN SEQRES 11 A 316 SER PRO ALA PRO THR HIS ASN SER LEU PHE LEU PHE ASP SEQRES 12 A 316 GLY SER PRO THR TYR VAL LEU ALA TYR THR GLN SER TYR SEQRES 13 A 316 ARG ALA LYS LEU THR PRO GLY CYS GLU ALA GLU ALA GLU SEQRES 14 A 316 THR GLU ALA ILE CYS PHE PHE VAL GLN GLN PHE THR ASP SEQRES 15 A 316 MET GLU HIS ASN ARG VAL LEU GLU ALA LEU LEU PRO LEU SEQRES 16 A 316 LYS GLY LEU GLU GLU ARG VAL ALA ALA ALA VAL ASP LEU SEQRES 17 A 316 ILE ILE LYS SER HIS GLN GLY LEU ASP ARG GLN GLU LEU SEQRES 18 A 316 SER PHE ALA ALA ARG SER PHE TYR TYR LYS LEU ARG ALA SEQRES 19 A 316 ALA GLU GLN TYR THR PRO LYS ALA LYS TYR HIS GLY ASN SEQRES 20 A 316 VAL MET LEU LEU ARG ALA LYS THR GLY GLY ALA TYR GLY SEQRES 21 A 316 GLU ASP LEU GLY ALA ASP TYR ASN LEU SER GLN VAL CYS SEQRES 22 A 316 ASP GLY LYS VAL SER VAL HIS VAL ILE GLU GLY ASP HIS SEQRES 23 A 316 ARG THR LEU LEU GLU GLY SER GLY LEU GLU SER ILE ILE SEQRES 24 A 316 SER ILE ILE HIS SER SER LEU ALA GLU PRO ARG VAL SER SEQRES 25 A 316 VAL ARG GLU GLY SEQRES 1 B 316 GLY SER HIS ASN LEU ALA CYS PRO THR PRO LYS GLU ASP SEQRES 2 B 316 GLY LEU ALA GLN GLN GLN THR GLN LEU ASN LEU ARG SER SEQRES 3 B 316 LEU LEU VAL ASN PRO GLU GLY PRO THR LEU MET ARG LEU SEQRES 4 B 316 ASN SER VAL GLN SER SER GLU ARG PRO LEU PHE LEU VAL SEQRES 5 B 316 HIS PRO ILE GLU GLY SER THR THR VAL PHE HIS SER LEU SEQRES 6 B 316 ALA SER ARG LEU SER ILE PRO THR TYR GLY LEU GLN CYS SEQRES 7 B 316 THR ARG ALA ALA PRO LEU ASP SER ILE HIS SER LEU ALA SEQRES 8 B 316 ALA TYR TYR ILE ASP CYS ILE ARG GLN VAL GLN PRO GLU SEQRES 9 B 316 GLY PRO TYR ARG VAL ALA GLY TYR SER TYR GLY ALA CYS SEQRES 10 B 316 VAL ALA PHE GLU MET CYS SER GLN LEU GLN ALA GLN GLN SEQRES 11 B 316 SER PRO ALA PRO THR HIS ASN SER LEU PHE LEU PHE ASP SEQRES 12 B 316 GLY SER PRO THR TYR VAL LEU ALA TYR THR GLN SER TYR SEQRES 13 B 316 ARG ALA LYS LEU THR PRO GLY CYS GLU ALA GLU ALA GLU SEQRES 14 B 316 THR GLU ALA ILE CYS PHE PHE VAL GLN GLN PHE THR ASP SEQRES 15 B 316 MET GLU HIS ASN ARG VAL LEU GLU ALA LEU LEU PRO LEU SEQRES 16 B 316 LYS GLY LEU GLU GLU ARG VAL ALA ALA ALA VAL ASP LEU SEQRES 17 B 316 ILE ILE LYS SER HIS GLN GLY LEU ASP ARG GLN GLU LEU SEQRES 18 B 316 SER PHE ALA ALA ARG SER PHE TYR TYR LYS LEU ARG ALA SEQRES 19 B 316 ALA GLU GLN TYR THR PRO LYS ALA LYS TYR HIS GLY ASN SEQRES 20 B 316 VAL MET LEU LEU ARG ALA LYS THR GLY GLY ALA TYR GLY SEQRES 21 B 316 GLU ASP LEU GLY ALA ASP TYR ASN LEU SER GLN VAL CYS SEQRES 22 B 316 ASP GLY LYS VAL SER VAL HIS VAL ILE GLU GLY ASP HIS SEQRES 23 B 316 ARG THR LEU LEU GLU GLY SER GLY LEU GLU SER ILE ILE SEQRES 24 B 316 SER ILE ILE HIS SER SER LEU ALA GLU PRO ARG VAL SER SEQRES 25 B 316 VAL ARG GLU GLY HET DH9 A3000 35 HET DH9 B 61 36 HET DTT B 71 8 HETNAM DH9 (2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3- HETNAM 2 DH9 HYDROXYHEXADECANOIC ACID HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 DH9 2(C29 H55 N O6) FORMUL 5 DTT C4 H10 O2 S2 FORMUL 6 HOH *53(H2 O) HELIX 1 1 THR A 2254 VAL A 2256 5 3 HELIX 2 2 PHE A 2257 LEU A 2264 1 8 HELIX 3 3 SER A 2281 ARG A 2294 1 14 HELIX 4 4 SER A 2308 GLN A 2325 1 18 HELIX 5 5 ALA A 2361 THR A 2376 1 16 HELIX 6 6 GLU A 2379 LEU A 2388 1 10 HELIX 7 7 GLY A 2392 HIS A 2408 1 17 HELIX 8 8 ASP A 2412 GLN A 2432 1 21 HELIX 9 9 ARG A 2482 LEU A 2485 5 4 HELIX 10 10 GLU A 2486 LEU A 2501 1 16 HELIX 11 11 THR B 2254 VAL B 2256 5 3 HELIX 12 12 PHE B 2257 LEU B 2264 1 8 HELIX 13 13 SER B 2281 ARG B 2294 1 14 HELIX 14 14 SER B 2308 SER B 2326 1 19 HELIX 15 15 GLU B 2360 THR B 2376 1 17 HELIX 16 16 GLU B 2379 LEU B 2388 1 10 HELIX 17 17 GLY B 2392 LYS B 2406 1 15 HELIX 18 18 ASP B 2412 GLN B 2432 1 21 HELIX 19 19 ARG B 2482 LEU B 2485 5 4 HELIX 20 20 GLU B 2486 ALA B 2502 1 17 SHEET 1 A 7 LEU A2231 ARG A2233 0 SHEET 2 A 7 THR A2268 LEU A2271 -1 O GLY A2270 N MET A2232 SHEET 3 A 7 LEU A2244 VAL A2247 1 N LEU A2244 O TYR A2269 SHEET 4 A 7 ARG A2303 TYR A2307 1 O ARG A2303 N PHE A2245 SHEET 5 A 7 SER A2333 PHE A2337 1 O PHE A2337 N GLY A2306 SHEET 6 A 7 VAL A2443 ALA A2448 1 O MET A2444 N LEU A2336 SHEET 7 A 7 VAL A2472 ILE A2477 1 O HIS A2475 N LEU A2445 SHEET 1 B 7 LEU B2231 ARG B2233 0 SHEET 2 B 7 THR B2268 LEU B2271 -1 O GLY B2270 N MET B2232 SHEET 3 B 7 LEU B2244 VAL B2247 1 N LEU B2246 O LEU B2271 SHEET 4 B 7 ARG B2303 TYR B2307 1 O ARG B2303 N PHE B2245 SHEET 5 B 7 SER B2333 PHE B2337 1 O SER B2333 N VAL B2304 SHEET 6 B 7 VAL B2443 ALA B2448 1 O MET B2444 N LEU B2336 SHEET 7 B 7 VAL B2472 ILE B2477 1 O ILE B2477 N ARG B2447 LINK OG SER A2308 C1' DH9 A3000 1555 1555 1.38 CISPEP 1 GLY A 2300 PRO A 2301 0 5.09 CISPEP 2 THR A 2342 TYR A 2343 0 21.35 CISPEP 3 GLY B 2300 PRO B 2301 0 -2.10 CISPEP 4 SER B 2326 PRO B 2327 0 8.41 SITE 1 AC1 12 LEU A2222 PRO A2249 ILE A2250 GLU A2251 SITE 2 AC1 12 SER A2308 TYR A2309 TYR A2343 ALA A2363 SITE 3 AC1 12 PHE A2370 PHE A2423 HIS A2481 ARG A2482 SITE 1 AC2 9 HOH B 5 SER B2308 TYR B2309 TYR B2343 SITE 2 AC2 9 ALA B2363 PHE B2370 GLN B2374 PHE B2423 SITE 3 AC2 9 GLU B2431 SITE 1 AC3 8 LEU A2279 ASP A2280 SER A2422 TYR A2425 SITE 2 AC3 8 SER B2281 HIS B2283 SER B2284 ALA B2287 CRYST1 41.860 94.320 69.720 90.00 95.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023889 0.000000 0.002435 0.00000 SCALE2 0.000000 0.010602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014417 0.00000 MASTER 464 0 3 20 14 0 8 6 0 0 0 50 END