HEADER TRANSFERASE 30-APR-07 2PPV TITLE CRYSTAL STRUCTURE OF A PROTEIN BELONGING TO THE UPF0052 (SE_0549) FROM TITLE 2 STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS EPIDERMIDIS; SOURCE 3 ORGANISM_TAXID: 176280; SOURCE 4 STRAIN: ATCC 12228; SOURCE 5 GENE: NP_764104.1, SE_0549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PHOSPHOTRANSFERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 18-OCT-17 2PPV 1 REMARK REVDAT 4 13-JUL-11 2PPV 1 VERSN REVDAT 3 28-JUL-10 2PPV 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2PPV 1 VERSN REVDAT 1 15-MAY-07 2PPV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (NP_764104.1) JRNL TITL 2 FROM STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228 AT 2.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.174 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2537 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2348 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3473 ; 1.480 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5461 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.713 ;25.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;14.138 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;23.605 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2873 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 459 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 490 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2358 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1298 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1559 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.123 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 2.370 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 674 ; 0.597 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2685 ; 3.567 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 927 ; 6.042 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 776 ; 8.808 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5620 25.5800 27.4090 REMARK 3 T TENSOR REMARK 3 T11: -0.1041 T22: -0.0923 REMARK 3 T33: -0.0253 T12: 0.0173 REMARK 3 T13: 0.0210 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.1991 L22: 1.2011 REMARK 3 L33: 0.9542 L12: -0.6899 REMARK 3 L13: -0.3703 L23: 0.3487 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0993 S13: 0.0600 REMARK 3 S21: -0.0331 S22: 0.0466 S23: -0.1544 REMARK 3 S31: -0.0506 S32: -0.0015 S33: -0.0676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 4. RAMACHANDRAN OUTLIER A151 IS LOCATED IN POOR DENSITY. REMARK 3 5. UNMODELED DENSITY NEAR RESIDUES A13, A41, A126 AND A208 REMARK 3 MAY BE PART OF THE ACTIVE SITE. REMARK 4 REMARK 4 2PPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931, 0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.185 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : 0.87000 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M DI-AMMONIUM HYDROGEN REMARK 280 PHOSPHATE, 25.0% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.97850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.97850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.33300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.40700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.33300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.40700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.97850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.33300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.40700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.97850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.33300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.40700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.95700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 327 REMARK 465 ASP A 328 REMARK 465 LYS A 329 REMARK 465 LYS A 330 REMARK 465 LYS A 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 149 CE NZ REMARK 470 THR A 150 OG1 CG2 REMARK 470 HIS A 151 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS A 153 CE NZ REMARK 470 LYS A 198 CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 ARG A 262 CZ NH1 NH2 REMARK 470 GLU A 264 CD OE1 OE2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LYS A 269 CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 THR A 325 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 109.54 -161.35 REMARK 500 LYS A 149 31.75 -94.78 REMARK 500 THR A 150 -124.32 -109.13 REMARK 500 HIS A 151 40.01 176.00 REMARK 500 PHE A 244 -13.17 -147.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 366230 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2PPV A 1 331 UNP Q8CTE2 Q8CTE2_STAES 1 331 SEQADV 2PPV GLY A 0 UNP Q8CTE2 LEADER SEQUENCE SEQADV 2PPV MSE A 1 UNP Q8CTE2 MET 1 MODIFIED RESIDUE SEQADV 2PPV MSE A 4 UNP Q8CTE2 MET 4 MODIFIED RESIDUE SEQADV 2PPV MSE A 49 UNP Q8CTE2 MET 49 MODIFIED RESIDUE SEQADV 2PPV MSE A 97 UNP Q8CTE2 MET 97 MODIFIED RESIDUE SEQADV 2PPV MSE A 135 UNP Q8CTE2 MET 135 MODIFIED RESIDUE SEQADV 2PPV MSE A 167 UNP Q8CTE2 MET 167 MODIFIED RESIDUE SEQADV 2PPV MSE A 218 UNP Q8CTE2 MET 218 MODIFIED RESIDUE SEQADV 2PPV MSE A 310 UNP Q8CTE2 MET 310 MODIFIED RESIDUE SEQRES 1 A 332 GLY MSE LYS GLN MSE ASN VAL VAL LEU ILE GLY GLY GLY SEQRES 2 A 332 THR GLY LEU SER VAL LEU ALA ARG GLY LEU ARG GLU PHE SEQRES 3 A 332 PRO ILE ASP ILE THR ALA ILE VAL THR VAL ALA ASP ASN SEQRES 4 A 332 GLY GLY SER THR GLY LYS ILE ARG ASP VAL MSE ASP ILE SEQRES 5 A 332 PRO ALA PRO GLY ASP ILE ARG ASN VAL ILE ALA ALA LEU SEQRES 6 A 332 SER ASP SER GLU SER ILE LEU THR GLN LEU PHE GLN TYR SEQRES 7 A 332 ARG PHE GLY GLU ASN GLN VAL ASP GLY HIS SER LEU GLY SEQRES 8 A 332 ASN LEU VAL ILE ALA GLY MSE THR ASN ILE THR ASN ASP SEQRES 9 A 332 PHE GLY HIS ALA ILE LYS GLU LEU SER LYS VAL LEU ASN SEQRES 10 A 332 ILE LYS GLY GLN VAL ILE PRO SER THR ASN ALA SER VAL SEQRES 11 A 332 GLN LEU ASN ALA VAL MSE GLU ASP GLY GLU ILE VAL HIS SEQRES 12 A 332 GLY GLU THR ASN ILE PRO LYS THR HIS LYS LYS ILE ASP SEQRES 13 A 332 ARG VAL PHE LEU GLU PRO SER ASP VAL GLU PRO MSE ASN SEQRES 14 A 332 GLU ALA ILE GLU ALA LEU GLU GLN ALA ASP LEU ILE VAL SEQRES 15 A 332 LEU GLY PRO GLY SER LEU TYR THR SER VAL ILE SER ASN SEQRES 16 A 332 LEU CYS VAL LYS GLY ILE SER GLU ALA LEU LEU ARG THR SEQRES 17 A 332 SER ALA PRO LYS LEU TYR VAL SER ASN VAL MSE THR GLN SEQRES 18 A 332 PRO GLY GLU THR ASP ASN TYR ASP VAL LYS GLU HIS ILE SEQRES 19 A 332 ASP ALA LEU THR ARG GLN VAL GLY GLU PRO PHE ILE ASP SEQRES 20 A 332 PHE VAL ILE CYS SER SER GLU SER TYR SER LYS ASP VAL SEQRES 21 A 332 LEU GLN ARG TYR GLU GLU LYS ASN SER LYS PRO VAL ALA SEQRES 22 A 332 VAL HIS LYS GLU GLN LEU LYS ASP SER GLY ILE ARG VAL SEQRES 23 A 332 LEU THR ALA SER ASN LEU VAL GLU ILE SER ASN GLU HIS SEQRES 24 A 332 TYR VAL ARG HIS ASN THR LYS VAL LEU SER LYS MSE ILE SEQRES 25 A 332 TYR GLU LEU ALA LEU GLU LEU THR SER THR ILE ARG PHE SEQRES 26 A 332 THR PRO SER ASP LYS LYS LYS MODRES 2PPV MSE A 4 MET SELENOMETHIONINE MODRES 2PPV MSE A 49 MET SELENOMETHIONINE MODRES 2PPV MSE A 97 MET SELENOMETHIONINE MODRES 2PPV MSE A 135 MET SELENOMETHIONINE MODRES 2PPV MSE A 167 MET SELENOMETHIONINE MODRES 2PPV MSE A 218 MET SELENOMETHIONINE MODRES 2PPV MSE A 310 MET SELENOMETHIONINE HET MSE A 4 8 HET MSE A 49 8 HET MSE A 97 8 HET MSE A 135 8 HET MSE A 167 8 HET MSE A 218 8 HET MSE A 310 8 HET PO4 A 332 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *281(H2 O) HELIX 1 1 GLY A 11 ARG A 23 1 13 HELIX 2 2 GLY A 39 MSE A 49 1 11 HELIX 3 3 PRO A 54 LEU A 64 1 11 HELIX 4 4 SER A 69 GLN A 76 1 8 HELIX 5 5 GLN A 83 HIS A 87 5 5 HELIX 6 6 SER A 88 ASN A 102 1 15 HELIX 7 7 ASP A 103 LEU A 115 1 13 HELIX 8 8 MSE A 167 ALA A 177 1 11 HELIX 9 9 VAL A 191 CYS A 196 1 6 HELIX 10 10 VAL A 197 THR A 207 1 11 HELIX 11 11 ASP A 228 GLY A 241 1 14 HELIX 12 12 SER A 256 LYS A 266 1 11 HELIX 13 13 HIS A 274 SER A 281 1 8 HELIX 14 14 ASN A 303 THR A 319 1 17 SHEET 1 A 7 GLN A 120 PRO A 123 0 SHEET 2 A 7 ILE A 27 VAL A 33 1 N ALA A 31 O ILE A 122 SHEET 3 A 7 MSE A 4 GLY A 10 1 N LEU A 8 O ILE A 32 SHEET 4 A 7 LEU A 179 LEU A 182 1 O VAL A 181 N VAL A 7 SHEET 5 A 7 LYS A 211 VAL A 214 1 O LEU A 212 N LEU A 182 SHEET 6 A 7 PHE A 247 ILE A 249 1 O PHE A 247 N TYR A 213 SHEET 7 A 7 ARG A 284 LEU A 286 1 O LEU A 286 N VAL A 248 SHEET 1 B 3 ILE A 140 HIS A 142 0 SHEET 2 B 3 GLN A 130 MSE A 135 -1 N ALA A 133 O VAL A 141 SHEET 3 B 3 ILE A 154 GLU A 160 -1 O ASP A 155 N VAL A 134 SHEET 1 C 2 VAL A 292 ILE A 294 0 SHEET 2 C 2 VAL A 300 HIS A 302 -1 O ARG A 301 N GLU A 293 LINK C GLN A 3 N MSE A 4 1555 1555 1.32 LINK C MSE A 4 N ASN A 5 1555 1555 1.32 LINK C VAL A 48 N MSE A 49 1555 1555 1.34 LINK C MSE A 49 N ASP A 50 1555 1555 1.32 LINK C GLY A 96 N MSE A 97 1555 1555 1.32 LINK C MSE A 97 N THR A 98 1555 1555 1.32 LINK C VAL A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N GLU A 136 1555 1555 1.34 LINK C PRO A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N ASN A 168 1555 1555 1.33 LINK C VAL A 217 N MSE A 218 1555 1555 1.34 LINK C MSE A 218 N THR A 219 1555 1555 1.32 LINK C LYS A 309 N MSE A 310 1555 1555 1.34 LINK C MSE A 310 N ILE A 311 1555 1555 1.34 CISPEP 1 GLU A 160 PRO A 161 0 -9.07 CISPEP 2 GLY A 183 PRO A 184 0 3.10 SITE 1 AC1 4 PRO A 243 PHE A 244 ILE A 245 HOH A 447 CRYST1 136.666 136.814 55.957 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017870 0.00000 MASTER 384 0 8 14 12 0 1 6 0 0 0 26 END