HEADER LIGASE 23-APR-07 2PN1 TITLE CRYSTAL STRUCTURE OF CARBAMOYLPHOSPHATE SYNTHASE LARGE SUBUNIT (SPLIT TITLE 2 GENE IN MJ) (ZP_00538348.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 2.00 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAMOYLPHOSPHATE SYNTHASE LARGE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATP-GRASP DOMAIN; COMPND 5 SYNONYM: SPLIT GENE IN MJ; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SIBIRICUM; SOURCE 3 ORGANISM_TAXID: 262543; SOURCE 4 STRAIN: 255-15; SOURCE 5 GENE: ZP_00538348.1, EXIGDRAFT_2250; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ZP_00538348.1, ATP-GRASP DOMAIN, CARBAMOYLPHOSPHATE SYNTHASE LARGE KEYWDS 2 SUBUNIT (SPLIT GENE IN MJ), STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-OCT-17 2PN1 1 REMARK REVDAT 4 18-OCT-17 2PN1 1 REMARK REVDAT 3 13-JUL-11 2PN1 1 VERSN REVDAT 2 24-FEB-09 2PN1 1 VERSN REVDAT 1 08-MAY-07 2PN1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CARBAMOYLPHOSPHATE SYNTHASE LARGE JRNL TITL 2 SUBUNIT (SPLIT GENE IN MJ) (ZP_00538348.1) FROM JRNL TITL 3 EXIGUOBACTERIUM SP. 255-15 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2468 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1632 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3357 ; 1.622 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4003 ; 1.306 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 3.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;34.793 ;24.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;10.878 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;10.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 439 ; 0.168 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1608 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1190 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1266 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.121 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.086 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 1.562 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 630 ; 0.368 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2494 ; 2.351 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 4.548 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 858 ; 6.094 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 158 REMARK 3 RESIDUE RANGE : A 182 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3650 39.0300 46.1180 REMARK 3 T TENSOR REMARK 3 T11: -0.0665 T22: -0.0425 REMARK 3 T33: -0.0340 T12: 0.0007 REMARK 3 T13: 0.0033 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8101 L22: 0.5288 REMARK 3 L33: 1.1110 L12: -0.1356 REMARK 3 L13: -0.0175 L23: -0.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0117 S13: 0.0877 REMARK 3 S21: -0.0241 S22: 0.0375 S23: -0.0051 REMARK 3 S31: -0.0866 S32: -0.0575 S33: -0.0361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 159-181 ARE DISORDERED AND ARE NOT INCLUDED IN THE REMARK 3 MODEL. REMARK 3 4. A GLYCEROL MOLECULE FROM THE CRYO SOLUTION IS MODELED. REMARK 3 5. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2PN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.587 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 24.0% PEG 8000, 0.25M SODIUM REMARK 280 CHLORIDE, 0.1M PHOSPHATE-CITRATE PH 4.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 5.57401 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 127.44280 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 159 REMARK 465 ALA A 160 REMARK 465 SER A 161 REMARK 465 ILE A 162 REMARK 465 GLU A 163 REMARK 465 VAL A 164 REMARK 465 ARG A 165 REMARK 465 ARG A 166 REMARK 465 VAL A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 VAL A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 VAL A 173 REMARK 465 GLU A 174 REMARK 465 GLN A 175 REMARK 465 LEU A 176 REMARK 465 PHE A 177 REMARK 465 SER A 178 REMARK 465 LYS A 179 REMARK 465 ASN A 180 REMARK 465 THR A 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 470 LEU A 149 CG CD1 CD2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 GLN A 326 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 304 68.96 -100.64 REMARK 500 ILE A 328 -114.38 -122.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 369798 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2PN1 A 1 330 UNP Q41GJ8 Q41GJ8_9BACI 1 330 SEQADV 2PN1 GLY A 0 UNP Q41GJ8 LEADER SEQUENCE SEQADV 2PN1 MSE A 1 UNP Q41GJ8 MET 1 MODIFIED RESIDUE SEQADV 2PN1 MSE A 44 UNP Q41GJ8 MET 44 MODIFIED RESIDUE SEQADV 2PN1 MSE A 117 UNP Q41GJ8 MET 117 MODIFIED RESIDUE SEQADV 2PN1 MSE A 135 UNP Q41GJ8 MET 135 MODIFIED RESIDUE SEQADV 2PN1 MSE A 218 UNP Q41GJ8 MET 218 MODIFIED RESIDUE SEQADV 2PN1 MSE A 294 UNP Q41GJ8 MET 294 MODIFIED RESIDUE SEQADV 2PN1 MSE A 311 UNP Q41GJ8 MET 311 MODIFIED RESIDUE SEQRES 1 A 331 GLY MSE GLN LYS PRO HIS LEU LEU ILE THR SER ALA GLY SEQRES 2 A 331 ARG ARG ALA LYS LEU VAL GLU TYR PHE VAL LYS GLU PHE SEQRES 3 A 331 LYS THR GLY ARG VAL SER THR ALA ASP CYS SER PRO LEU SEQRES 4 A 331 ALA SER ALA LEU TYR MSE ALA ASP GLN HIS TYR ILE VAL SEQRES 5 A 331 PRO LYS ILE ASP GLU VAL GLU TYR ILE ASP HIS LEU LEU SEQRES 6 A 331 THR LEU CYS GLN ASP GLU GLY VAL THR ALA LEU LEU THR SEQRES 7 A 331 LEU ILE ASP PRO GLU LEU GLY LEU LEU ALA GLN ALA THR SEQRES 8 A 331 GLU ARG PHE GLN ALA ILE GLY VAL THR VAL ILE VAL SER SEQRES 9 A 331 PRO TYR ALA ALA CYS GLU LEU CYS PHE ASP LYS TYR THR SEQRES 10 A 331 MSE TYR GLU TYR CYS LEU ARG GLN GLY ILE ALA HIS ALA SEQRES 11 A 331 ARG THR TYR ALA THR MSE ALA SER PHE GLU GLU ALA LEU SEQRES 12 A 331 ALA ALA GLY GLU VAL GLN LEU PRO VAL PHE VAL LYS PRO SEQRES 13 A 331 ARG ASN GLY SER ALA SER ILE GLU VAL ARG ARG VAL GLU SEQRES 14 A 331 THR VAL GLU GLU VAL GLU GLN LEU PHE SER LYS ASN THR SEQRES 15 A 331 ASP LEU ILE VAL GLN GLU LEU LEU VAL GLY GLN GLU LEU SEQRES 16 A 331 GLY VAL ASP ALA TYR VAL ASP LEU ILE SER GLY LYS VAL SEQRES 17 A 331 THR SER ILE PHE ILE LYS GLU LYS LEU THR MSE ARG ALA SEQRES 18 A 331 GLY GLU THR ASP LYS SER ARG SER VAL LEU ARG ASP ASP SEQRES 19 A 331 VAL PHE GLU LEU VAL GLU HIS VAL LEU ASP GLY SER GLY SEQRES 20 A 331 LEU VAL GLY PRO LEU ASP PHE ASP LEU PHE ASP VAL ALA SEQRES 21 A 331 GLY THR LEU TYR LEU SER GLU ILE ASN PRO ARG PHE GLY SEQRES 22 A 331 GLY GLY TYR PRO HIS ALA TYR GLU CYS GLY VAL ASN PHE SEQRES 23 A 331 PRO ALA GLN LEU TYR ARG ASN LEU MSE HIS GLU ILE ASN SEQRES 24 A 331 VAL PRO GLN ILE GLY GLN TYR LEU ASP ASP ILE TYR MSE SEQRES 25 A 331 LEU LYS HIS ASP THR VAL THR LEU ILE SER ALA ALA GLU SEQRES 26 A 331 LEU GLN LYS ILE LYS ARG MODRES 2PN1 MSE A 1 MET SELENOMETHIONINE MODRES 2PN1 MSE A 44 MET SELENOMETHIONINE MODRES 2PN1 MSE A 117 MET SELENOMETHIONINE MODRES 2PN1 MSE A 135 MET SELENOMETHIONINE MODRES 2PN1 MSE A 218 MET SELENOMETHIONINE MODRES 2PN1 MSE A 294 MET SELENOMETHIONINE MODRES 2PN1 MSE A 311 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 117 8 HET MSE A 135 8 HET MSE A 218 8 HET MSE A 294 8 HET MSE A 311 8 HET GOL A 331 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *165(H2 O) HELIX 1 1 ARG A 14 PHE A 25 1 12 HELIX 2 2 ALA A 39 ALA A 45 5 7 HELIX 3 3 GLU A 58 GLY A 71 1 14 HELIX 4 4 ILE A 79 ALA A 89 1 11 HELIX 5 5 ALA A 89 ALA A 95 1 7 HELIX 6 6 PRO A 104 ASP A 113 1 10 HELIX 7 7 ASP A 113 GLY A 125 1 13 HELIX 8 8 THR A 134 ALA A 144 1 11 HELIX 9 9 ARG A 231 ASP A 243 1 13 HELIX 10 10 GLY A 274 CYS A 281 1 8 HELIX 11 11 ASN A 284 MSE A 294 1 11 HELIX 12 12 SER A 321 GLN A 326 1 6 SHEET 1 A 5 HIS A 48 ILE A 50 0 SHEET 2 A 5 ARG A 29 ASP A 34 1 N THR A 32 O TYR A 49 SHEET 3 A 5 HIS A 5 THR A 9 1 N LEU A 6 O SER A 31 SHEET 4 A 5 ALA A 74 THR A 77 1 O ALA A 74 N LEU A 7 SHEET 5 A 5 THR A 99 VAL A 100 1 O THR A 99 N LEU A 75 SHEET 1 B 3 THR A 131 TYR A 132 0 SHEET 2 B 3 LEU A 183 GLU A 187 -1 O VAL A 185 N TYR A 132 SHEET 3 B 3 VAL A 151 PRO A 155 -1 N LYS A 154 O ILE A 184 SHEET 1 C 6 THR A 261 ASN A 268 0 SHEET 2 C 6 GLY A 249 VAL A 258 -1 N ASP A 252 O ASN A 268 SHEET 3 C 6 GLN A 192 VAL A 200 -1 N ALA A 198 O LEU A 251 SHEET 4 C 6 VAL A 207 ARG A 219 -1 O PHE A 211 N ASP A 197 SHEET 5 C 6 GLU A 222 VAL A 229 -1 O ARG A 227 N GLU A 214 SHEET 6 C 6 TYR A 310 LEU A 312 -1 O MSE A 311 N SER A 226 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C TYR A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N ALA A 45 1555 1555 1.34 LINK C THR A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N TYR A 118 1555 1555 1.34 LINK C THR A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N ALA A 136 1555 1555 1.34 LINK C THR A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N ARG A 219 1555 1555 1.33 LINK C LEU A 293 N MSE A 294 1555 1555 1.34 LINK C MSE A 294 N HIS A 295 1555 1555 1.34 LINK C TYR A 310 N MSE A 311 1555 1555 1.33 LINK C MSE A 311 N LEU A 312 1555 1555 1.34 SITE 1 AC1 7 GLU A 222 ASP A 252 ASN A 268 ARG A 270 SITE 2 AC1 7 GLY A 273 GLY A 274 HOH A 461 CRYST1 91.600 61.210 76.880 90.00 124.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010920 0.000000 0.007370 0.00000 SCALE2 0.000000 0.016340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015690 0.00000 MASTER 356 0 8 12 14 0 2 6 0 0 0 26 END