HEADER OXIDOREDUCTASE 06-APR-07 2PG0 TITLE CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FROM GEOBACILLUS TITLE 2 KAUSTOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.99.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: GK1316; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL-X; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS GK1316, ACYL-COA DEHYDROGENASE, GEOBACILLUS KAUSTOPHILUS HTA426, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, SOUTHEAST KEYWDS 3 COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,L.-Q.CHEN,A.EBIHARA,A.SHINKAI,S.KURAMITSU,S.YOKOYAMA,M.ZHAO, AUTHOR 2 Y.LI,Z.-Q.FU,J.P.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 3 STRUCTURAL GENOMICS (SECSG),RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 4 INITIATIVE (RSGI) REVDAT 5 24-JAN-18 2PG0 1 AUTHOR JRNL REVDAT 4 13-SEP-17 2PG0 1 REMARK REVDAT 3 13-JUL-11 2PG0 1 VERSN REVDAT 2 24-FEB-09 2PG0 1 VERSN REVDAT 1 08-MAY-07 2PG0 0 JRNL AUTH L.CHEN,L.-Q.CHEN,A.EBIHARA,A.SHINKAI,S.KURAMITSU,S.YOKOYAMA, JRNL AUTH 2 M.ZHAO,Y.LI,Z.-Q.FU,J.P.ROSE,B.-C.WANG JRNL TITL CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FROM G. JRNL TITL 2 KAUSTOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 94153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 347 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 566 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.420 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6280 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8504 ; 1.111 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 755 ; 4.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;36.355 ;23.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1085 ;13.190 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;14.162 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 915 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4722 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3125 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4328 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 517 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3869 ; 0.656 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6020 ; 0.963 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2915 ; 1.666 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2484 ; 2.668 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: USING 4 MICROLITER DROPS CONTAINING REMARK 280 EQUAL VOLUMES OF PROTEIN CONCENTRATE (7.75 MG/ML) AND RESERVOIR REMARK 280 SOLUTION CONTAINING 40% V/V MPD, 0.10M CHES (PH 9.4), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.48400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.96800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.96800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.48400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER BY THE OPERATION -X, -X+Y, -Z+1/3. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.48400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 414 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 MET A 5 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 ASN B 3 REMARK 465 HIS B 4 REMARK 465 MET B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 385 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -57.07 -122.70 REMARK 500 ASP A 384 91.44 58.81 REMARK 500 ALA B 29 -57.75 -126.97 REMARK 500 ASP B 150 41.97 -100.12 REMARK 500 LYS B 181 92.11 32.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GKA001001316.1 RELATED DB: TARGETDB REMARK 900 RIKEN TARGETDB DBREF 2PG0 A 5 385 UNP Q5L0D5 Q5L0D5_GEOKA 1 381 DBREF 2PG0 B 5 385 UNP Q5L0D5 Q5L0D5_GEOKA 1 381 SEQADV 2PG0 GLY A 1 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 LEU A 2 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 ASN A 3 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 HIS A 4 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 GLY B 1 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 LEU B 2 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 ASN B 3 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 HIS B 4 UNP Q5L0D5 CLONING ARTIFACT SEQRES 1 A 385 GLY LEU ASN HIS MET THR ALA ARG TYR LEU ARG GLU GLU SEQRES 2 A 385 HIS HIS MET PHE ARG ALA ALA PHE ARG LYS PHE LEU GLU SEQRES 3 A 385 LYS GLU ALA TYR PRO HIS TYR ASN ASP TRP GLU LYS ARG SEQRES 4 A 385 GLY ILE ILE PRO ARG SER PHE TRP ALA LYS MET GLY GLU SEQRES 5 A 385 ASN GLY PHE LEU CYS PRO TRP VAL ASP GLU LYS TYR GLY SEQRES 6 A 385 GLY LEU ASN ALA ASP PHE ALA TYR SER VAL VAL ILE ASN SEQRES 7 A 385 GLU GLU LEU GLU LYS VAL GLY SER SER LEU VAL GLY ILE SEQRES 8 A 385 GLY LEU HIS ASN ASP ILE VAL THR PRO TYR ILE ALA SER SEQRES 9 A 385 TYR GLY THR GLU GLU GLN LYS GLN LYS TRP LEU PRO LYS SEQRES 10 A 385 CYS VAL THR GLY GLU LEU ILE THR ALA ILE ALA MET THR SEQRES 11 A 385 GLU PRO GLY ALA GLY SER ASP LEU ALA ASN ILE SER THR SEQRES 12 A 385 THR ALA VAL LYS ASP GLY ASP TYR TYR ILE VAL ASN GLY SEQRES 13 A 385 GLN LYS THR PHE ILE THR ASN GLY ILE HIS ALA ASP LEU SEQRES 14 A 385 ILE VAL VAL ALA CYS LYS THR ASP PRO GLN ALA LYS PRO SEQRES 15 A 385 PRO HIS ARG GLY ILE SER LEU LEU VAL VAL GLU ARG ASP SEQRES 16 A 385 THR PRO GLY PHE THR ARG GLY ARG LYS LEU GLU LYS VAL SEQRES 17 A 385 GLY LEU HIS ALA GLN ASP THR ALA GLU LEU PHE PHE GLN SEQRES 18 A 385 ASP ALA LYS VAL PRO ALA TYR ASN LEU LEU GLY GLU GLU SEQRES 19 A 385 GLY LYS GLY PHE TYR TYR LEU MET GLU LYS LEU GLN GLN SEQRES 20 A 385 GLU ARG LEU VAL VAL ALA ILE ALA ALA GLN THR ALA ALA SEQRES 21 A 385 GLU VAL MET PHE SER LEU THR LYS GLN TYR VAL LYS GLN SEQRES 22 A 385 ARG THR ALA PHE GLY LYS ARG VAL SER GLU PHE GLN THR SEQRES 23 A 385 VAL GLN PHE ARG LEU ALA GLU MET ALA THR GLU ILE ALA SEQRES 24 A 385 LEU GLY ARG THR PHE VAL ASP ARG VAL ILE GLU GLU HIS SEQRES 25 A 385 MET ALA GLY LYS GLN ILE VAL THR GLU VAL SER MET ALA SEQRES 26 A 385 LYS TRP TRP ILE THR GLU MET ALA LYS ARG VAL ALA ALA SEQRES 27 A 385 GLU ALA MET GLN LEU HIS GLY GLY TYR GLY TYR MET GLU SEQRES 28 A 385 GLU TYR GLU ILE ALA ARG ARG TYR ARG ASP ILE PRO VAL SEQRES 29 A 385 SER ALA ILE TYR ALA GLY THR ASN GLU MET MET LYS THR SEQRES 30 A 385 ILE ILE ALA ARG GLN LEU ASP LEU SEQRES 1 B 385 GLY LEU ASN HIS MET THR ALA ARG TYR LEU ARG GLU GLU SEQRES 2 B 385 HIS HIS MET PHE ARG ALA ALA PHE ARG LYS PHE LEU GLU SEQRES 3 B 385 LYS GLU ALA TYR PRO HIS TYR ASN ASP TRP GLU LYS ARG SEQRES 4 B 385 GLY ILE ILE PRO ARG SER PHE TRP ALA LYS MET GLY GLU SEQRES 5 B 385 ASN GLY PHE LEU CYS PRO TRP VAL ASP GLU LYS TYR GLY SEQRES 6 B 385 GLY LEU ASN ALA ASP PHE ALA TYR SER VAL VAL ILE ASN SEQRES 7 B 385 GLU GLU LEU GLU LYS VAL GLY SER SER LEU VAL GLY ILE SEQRES 8 B 385 GLY LEU HIS ASN ASP ILE VAL THR PRO TYR ILE ALA SER SEQRES 9 B 385 TYR GLY THR GLU GLU GLN LYS GLN LYS TRP LEU PRO LYS SEQRES 10 B 385 CYS VAL THR GLY GLU LEU ILE THR ALA ILE ALA MET THR SEQRES 11 B 385 GLU PRO GLY ALA GLY SER ASP LEU ALA ASN ILE SER THR SEQRES 12 B 385 THR ALA VAL LYS ASP GLY ASP TYR TYR ILE VAL ASN GLY SEQRES 13 B 385 GLN LYS THR PHE ILE THR ASN GLY ILE HIS ALA ASP LEU SEQRES 14 B 385 ILE VAL VAL ALA CYS LYS THR ASP PRO GLN ALA LYS PRO SEQRES 15 B 385 PRO HIS ARG GLY ILE SER LEU LEU VAL VAL GLU ARG ASP SEQRES 16 B 385 THR PRO GLY PHE THR ARG GLY ARG LYS LEU GLU LYS VAL SEQRES 17 B 385 GLY LEU HIS ALA GLN ASP THR ALA GLU LEU PHE PHE GLN SEQRES 18 B 385 ASP ALA LYS VAL PRO ALA TYR ASN LEU LEU GLY GLU GLU SEQRES 19 B 385 GLY LYS GLY PHE TYR TYR LEU MET GLU LYS LEU GLN GLN SEQRES 20 B 385 GLU ARG LEU VAL VAL ALA ILE ALA ALA GLN THR ALA ALA SEQRES 21 B 385 GLU VAL MET PHE SER LEU THR LYS GLN TYR VAL LYS GLN SEQRES 22 B 385 ARG THR ALA PHE GLY LYS ARG VAL SER GLU PHE GLN THR SEQRES 23 B 385 VAL GLN PHE ARG LEU ALA GLU MET ALA THR GLU ILE ALA SEQRES 24 B 385 LEU GLY ARG THR PHE VAL ASP ARG VAL ILE GLU GLU HIS SEQRES 25 B 385 MET ALA GLY LYS GLN ILE VAL THR GLU VAL SER MET ALA SEQRES 26 B 385 LYS TRP TRP ILE THR GLU MET ALA LYS ARG VAL ALA ALA SEQRES 27 B 385 GLU ALA MET GLN LEU HIS GLY GLY TYR GLY TYR MET GLU SEQRES 28 B 385 GLU TYR GLU ILE ALA ARG ARG TYR ARG ASP ILE PRO VAL SEQRES 29 B 385 SER ALA ILE TYR ALA GLY THR ASN GLU MET MET LYS THR SEQRES 30 B 385 ILE ILE ALA ARG GLN LEU ASP LEU HET FAD A 401 53 HET FAD B 401 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *566(H2 O) HELIX 1 1 ARG A 11 ALA A 29 1 19 HELIX 2 2 HIS A 32 GLY A 40 1 9 HELIX 3 3 PRO A 43 ASN A 53 1 11 HELIX 4 4 ASP A 61 GLY A 65 5 5 HELIX 5 5 ASP A 70 GLY A 85 1 16 HELIX 6 6 LEU A 88 ILE A 97 1 10 HELIX 7 7 VAL A 98 GLY A 106 1 9 HELIX 8 8 THR A 107 GLY A 121 1 15 HELIX 9 9 ASP A 137 ILE A 141 5 5 HELIX 10 10 PRO A 182 ARG A 185 5 4 HELIX 11 11 LYS A 236 ARG A 274 1 39 HELIX 12 12 PHE A 284 ALA A 314 1 31 HELIX 13 13 ILE A 318 HIS A 344 1 27 HELIX 14 14 GLY A 345 MET A 350 5 6 HELIX 15 15 TYR A 353 ILE A 362 1 10 HELIX 16 16 PRO A 363 ILE A 367 5 5 HELIX 17 17 THR A 371 LEU A 383 1 13 HELIX 18 18 ARG B 11 ALA B 29 1 19 HELIX 19 19 HIS B 32 GLY B 40 1 9 HELIX 20 20 PRO B 43 ASN B 53 1 11 HELIX 21 21 ASP B 61 GLY B 65 5 5 HELIX 22 22 ASP B 70 GLY B 85 1 16 HELIX 23 23 LEU B 88 ILE B 97 1 10 HELIX 24 24 VAL B 98 GLY B 106 1 9 HELIX 25 25 THR B 107 GLY B 121 1 15 HELIX 26 26 ASP B 137 ILE B 141 5 5 HELIX 27 27 PRO B 182 ARG B 185 5 4 HELIX 28 28 LYS B 236 ARG B 274 1 39 HELIX 29 29 PHE B 284 ALA B 314 1 31 HELIX 30 30 ILE B 318 HIS B 344 1 27 HELIX 31 31 GLY B 345 MET B 350 5 6 HELIX 32 32 TYR B 353 ILE B 362 1 10 HELIX 33 33 PRO B 363 ILE B 367 5 5 HELIX 34 34 THR B 371 LEU B 383 1 13 SHEET 1 A 4 THR A 125 ALA A 128 0 SHEET 2 A 4 LEU A 169 LYS A 175 1 O VAL A 171 N ALA A 128 SHEET 3 A 4 ILE A 187 GLU A 193 -1 O VAL A 192 N ILE A 170 SHEET 4 A 4 LEU A 230 LEU A 231 -1 O LEU A 231 N LEU A 189 SHEET 1 B 4 THR A 144 ASP A 148 0 SHEET 2 B 4 TYR A 151 ILE A 161 -1 O ILE A 153 N VAL A 146 SHEET 3 B 4 ALA A 216 PRO A 226 -1 O VAL A 225 N TYR A 152 SHEET 4 B 4 PHE A 199 ARG A 201 -1 N THR A 200 O PHE A 219 SHEET 1 C 2 THR A 275 ALA A 276 0 SHEET 2 C 2 LYS A 279 ARG A 280 -1 O LYS A 279 N ALA A 276 SHEET 1 D 4 THR B 125 ALA B 128 0 SHEET 2 D 4 LEU B 169 LYS B 175 1 O VAL B 171 N ALA B 128 SHEET 3 D 4 ILE B 187 GLU B 193 -1 O SER B 188 N CYS B 174 SHEET 4 D 4 LEU B 230 LEU B 231 -1 O LEU B 231 N LEU B 189 SHEET 1 E 4 THR B 144 ASP B 148 0 SHEET 2 E 4 TYR B 151 ILE B 161 -1 O TYR B 151 N ASP B 148 SHEET 3 E 4 ALA B 216 PRO B 226 -1 O VAL B 225 N TYR B 152 SHEET 4 E 4 PHE B 199 ARG B 201 -1 N THR B 200 O PHE B 219 SHEET 1 F 2 THR B 275 ALA B 276 0 SHEET 2 F 2 LYS B 279 ARG B 280 -1 O LYS B 279 N ALA B 276 CISPEP 1 LYS A 181 PRO A 182 0 -1.70 CISPEP 2 GLY B 149 ASP B 150 0 4.42 CISPEP 3 LYS B 181 PRO B 182 0 8.64 SITE 1 AC1 29 ILE A 127 MET A 129 THR A 130 GLY A 135 SITE 2 AC1 29 SER A 136 PHE A 160 ILE A 161 THR A 162 SITE 3 AC1 29 GLN A 285 VAL A 364 ILE A 367 TYR A 368 SITE 4 AC1 29 THR A 371 GLU A 373 HOH A 403 HOH A 409 SITE 5 AC1 29 HOH A 444 HOH A 494 HOH A 542 ARG B 274 SITE 6 AC1 29 PHE B 277 VAL B 281 PHE B 284 THR B 286 SITE 7 AC1 29 GLN B 342 LEU B 343 GLY B 346 HOH B 454 SITE 8 AC1 29 HOH B 462 SITE 1 AC2 29 ARG A 274 PHE A 277 VAL A 281 PHE A 284 SITE 2 AC2 29 THR A 286 GLN A 342 LEU A 343 GLY A 346 SITE 3 AC2 29 HOH A 424 HOH A 503 ILE B 127 MET B 129 SITE 4 AC2 29 THR B 130 GLY B 135 SER B 136 PHE B 160 SITE 5 AC2 29 ILE B 161 THR B 162 GLN B 285 VAL B 364 SITE 6 AC2 29 ILE B 367 TYR B 368 THR B 371 GLU B 373 SITE 7 AC2 29 MET B 374 HOH B 406 HOH B 416 HOH B 438 SITE 8 AC2 29 HOH B 497 CRYST1 119.276 119.276 124.452 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008384 0.004840 0.000000 0.00000 SCALE2 0.000000 0.009681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008035 0.00000 MASTER 336 0 2 34 20 0 16 6 0 0 0 60 END