HEADER CELL ADHESION 11-FEB-07 2OUH TITLE CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN TITLE 2 IN COMPLEX WITH FRACTIONATED HEPARIN DP10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOSPONDIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THBS1, TSP, TSP1; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DROSOPHILA S2 CELL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS A KEYWDS TSP-1, TSPN-1, HBD, FRACTIONATED HEPARIN, DP10, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,A.JOACHIMIAK,J.WANG,J.LAWLER REVDAT 3 24-FEB-09 2OUH 1 VERSN REVDAT 2 19-FEB-08 2OUH 1 JRNL REVDAT 1 08-JAN-08 2OUH 0 JRNL AUTH K.TAN,M.DUQUETTE,J.H.LIU,K.SHANMUGASUNDARAM, JRNL AUTH 2 A.JOACHIMIAK,J.T.GALLAGHER,A.C.RIGBY,J.H.WANG, JRNL AUTH 3 J.LAWLER JRNL TITL HEPARIN-INDUCED CIS- AND TRANS-DIMERIZATION MODES JRNL TITL 2 OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN. JRNL REF J.BIOL.CHEM. V. 283 3932 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18065761 JRNL DOI 10.1074/JBC.M705203200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 14228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 57 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.63 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FRACTIONATED HEPARIN DP10 IS REMARK 3 CHEMICALLY HETEROGENEOUS AND PARTIALLY DISORDERED IN THE REMARK 3 STRUCTURE. AUTHORS WERE ABLE TO IDENTIFY ONLY SOME SO4 GROUPS REMARK 3 FROM THE HEPARIN BUT NOT THE HEPARIN BACKBONE DUE TO ITS REMARK 3 POSSIBLE MOBILITY. INSTEAD, THERE ARE SEVERAL WATER MOLECULES REMARK 3 BEING POSITIONED INTO SOME UNCHARACTERIZED DENSITIES NEAR REMARK 3 HEPARIN BINDING SITES. THESE DENSITIES ARE LIKELY FROM REMARK 3 PARTIALLY DISORDERED HEPARIN DP10, NOT NECESSARILY FROM WATER REMARK 3 MOLECULES. INCLUDING OF THESE WATERS IN THE MODEL WAS JUST FOR REMARK 3 THE REFINEMENT PURPOSES. REMARK 4 REMARK 4 2OUH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB041600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Z78 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG1500, 0.08M SODIUM ACETATE, REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.15800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.88950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.53450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 120.88950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.15800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.53450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TSPN-1 IS A MONOMER BY ITSELF. IN PRESENCE OF DP10, IT REMARK 300 FORMS A HEPARIN-LINKED DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -3 REMARK 465 SER A -2 REMARK 465 PRO A -1 REMARK 465 TRP A 0 REMARK 465 ASN A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 ASN A 10 REMARK 465 SER A 11 REMARK 465 SER A 215 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 THR A 218 REMARK 465 SER A 219 REMARK 465 VAL A 220 REMARK 465 LEU A 221 REMARK 465 LEU A 222 REMARK 465 THR A 223 REMARK 465 LEU A 224 REMARK 465 ASP A 225 REMARK 465 ASN A 226 REMARK 465 ASN A 227 REMARK 465 VAL A 228 REMARK 465 VAL A 229 REMARK 465 ASN A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 SER A 233 REMARK 465 PRO A 234 REMARK 465 ALA A 235 REMARK 465 ILE A 236 REMARK 465 ARG A 237 REMARK 465 THR A 238 REMARK 465 ASN A 239 REMARK 465 THR A 240 REMARK 465 GLY A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 ARG B -3 REMARK 465 SER B -2 REMARK 465 PRO B -1 REMARK 465 TRP B 0 REMARK 465 ASN B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 SER B 215 REMARK 465 SER B 216 REMARK 465 SER B 217 REMARK 465 THR B 218 REMARK 465 SER B 219 REMARK 465 VAL B 220 REMARK 465 LEU B 221 REMARK 465 LEU B 222 REMARK 465 THR B 223 REMARK 465 LEU B 224 REMARK 465 ASP B 225 REMARK 465 ASN B 226 REMARK 465 ASN B 227 REMARK 465 VAL B 228 REMARK 465 VAL B 229 REMARK 465 ASN B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 SER B 233 REMARK 465 PRO B 234 REMARK 465 ALA B 235 REMARK 465 ILE B 236 REMARK 465 ARG B 237 REMARK 465 THR B 238 REMARK 465 ASN B 239 REMARK 465 THR B 240 REMARK 465 GLY B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 87 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 THR A 132 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 52.60 -140.72 REMARK 500 LYS A 24 131.31 -173.00 REMARK 500 SER A 26 -137.33 -126.65 REMARK 500 VAL A 31 -166.96 -129.46 REMARK 500 PRO A 53 154.89 -49.01 REMARK 500 ALA A 74 142.24 -171.08 REMARK 500 HIS A 94 96.48 -12.46 REMARK 500 SER A 95 -47.18 -159.69 REMARK 500 GLN A 117 73.16 48.78 REMARK 500 ALA A 131 42.19 -77.82 REMARK 500 GLU A 144 -126.75 58.25 REMARK 500 ASP A 152 -115.23 52.53 REMARK 500 LEU A 173 -49.13 -26.53 REMARK 500 VAL A 186 -10.78 63.80 REMARK 500 ASN A 187 15.26 -158.99 REMARK 500 ASN A 211 0.60 -58.22 REMARK 500 THR B 19 -136.91 -102.75 REMARK 500 ARG B 23 -17.82 72.97 REMARK 500 LEU B 30 104.33 -55.52 REMARK 500 VAL B 31 -160.89 -118.20 REMARK 500 ALA B 74 139.12 -171.56 REMARK 500 ASP B 93 20.35 -76.95 REMARK 500 HIS B 94 16.38 46.28 REMARK 500 GLU B 144 -115.25 62.30 REMARK 500 ASP B 152 -100.10 71.43 REMARK 500 LYS B 155 132.10 -21.05 REMARK 500 ASP B 172 30.50 71.15 REMARK 500 ALA B 174 7.19 -67.78 REMARK 500 ASN B 211 16.23 -67.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 248 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 249 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 250 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 248 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 249 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z78 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN REMARK 900 RELATED ID: 1ZA4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN REMARK 900 IN COMPLEX WITH ARIXTRA REMARK 900 RELATED ID: 2OUJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN REMARK 900 IN COMPLEX WITH FRACTIONATED HEPARIN DP8 DBREF 2OUH A 1 239 UNP P07996 TSP1_HUMAN 19 257 DBREF 2OUH B 1 239 UNP P07996 TSP1_HUMAN 19 257 SEQADV 2OUH ARG A -3 UNP P07996 EXPRESSION TAG SEQADV 2OUH SER A -2 UNP P07996 EXPRESSION TAG SEQADV 2OUH PRO A -1 UNP P07996 EXPRESSION TAG SEQADV 2OUH TRP A 0 UNP P07996 EXPRESSION TAG SEQADV 2OUH THR A 66 UNP P07996 ALA 84 VARIANT SEQADV 2OUH THR A 240 UNP P07996 EXPRESSION TAG SEQADV 2OUH GLY A 241 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 242 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 243 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 244 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 245 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 246 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 247 UNP P07996 EXPRESSION TAG SEQADV 2OUH ARG B -3 UNP P07996 EXPRESSION TAG SEQADV 2OUH SER B -2 UNP P07996 EXPRESSION TAG SEQADV 2OUH PRO B -1 UNP P07996 EXPRESSION TAG SEQADV 2OUH TRP B 0 UNP P07996 EXPRESSION TAG SEQADV 2OUH THR B 66 UNP P07996 ALA 84 VARIANT SEQADV 2OUH THR B 240 UNP P07996 EXPRESSION TAG SEQADV 2OUH GLY B 241 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 242 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 243 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 244 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 245 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 246 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 247 UNP P07996 EXPRESSION TAG SEQRES 1 A 251 ARG SER PRO TRP ASN ARG ILE PRO GLU SER GLY GLY ASP SEQRES 2 A 251 ASN SER VAL PHE ASP ILE PHE GLU LEU THR GLY ALA ALA SEQRES 3 A 251 ARG LYS GLY SER GLY ARG ARG LEU VAL LYS GLY PRO ASP SEQRES 4 A 251 PRO SER SER PRO ALA PHE ARG ILE GLU ASP ALA ASN LEU SEQRES 5 A 251 ILE PRO PRO VAL PRO ASP ASP LYS PHE GLN ASP LEU VAL SEQRES 6 A 251 ASP ALA VAL ARG THR GLU LYS GLY PHE LEU LEU LEU ALA SEQRES 7 A 251 SER LEU ARG GLN MET LYS LYS THR ARG GLY THR LEU LEU SEQRES 8 A 251 ALA LEU GLU ARG LYS ASP HIS SER GLY GLN VAL PHE SER SEQRES 9 A 251 VAL VAL SER ASN GLY LYS ALA GLY THR LEU ASP LEU SER SEQRES 10 A 251 LEU THR VAL GLN GLY LYS GLN HIS VAL VAL SER VAL GLU SEQRES 11 A 251 GLU ALA LEU LEU ALA THR GLY GLN TRP LYS SER ILE THR SEQRES 12 A 251 LEU PHE VAL GLN GLU ASP ARG ALA GLN LEU TYR ILE ASP SEQRES 13 A 251 CYS GLU LYS MET GLU ASN ALA GLU LEU ASP VAL PRO ILE SEQRES 14 A 251 GLN SER VAL PHE THR ARG ASP LEU ALA SER ILE ALA ARG SEQRES 15 A 251 LEU ARG ILE ALA LYS GLY GLY VAL ASN ASP ASN PHE GLN SEQRES 16 A 251 GLY VAL LEU GLN ASN VAL ARG PHE VAL PHE GLY THR THR SEQRES 17 A 251 PRO GLU ASP ILE LEU ARG ASN LYS GLY CYS SER SER SER SEQRES 18 A 251 THR SER VAL LEU LEU THR LEU ASP ASN ASN VAL VAL ASN SEQRES 19 A 251 GLY SER SER PRO ALA ILE ARG THR ASN THR GLY HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 B 251 ARG SER PRO TRP ASN ARG ILE PRO GLU SER GLY GLY ASP SEQRES 2 B 251 ASN SER VAL PHE ASP ILE PHE GLU LEU THR GLY ALA ALA SEQRES 3 B 251 ARG LYS GLY SER GLY ARG ARG LEU VAL LYS GLY PRO ASP SEQRES 4 B 251 PRO SER SER PRO ALA PHE ARG ILE GLU ASP ALA ASN LEU SEQRES 5 B 251 ILE PRO PRO VAL PRO ASP ASP LYS PHE GLN ASP LEU VAL SEQRES 6 B 251 ASP ALA VAL ARG THR GLU LYS GLY PHE LEU LEU LEU ALA SEQRES 7 B 251 SER LEU ARG GLN MET LYS LYS THR ARG GLY THR LEU LEU SEQRES 8 B 251 ALA LEU GLU ARG LYS ASP HIS SER GLY GLN VAL PHE SER SEQRES 9 B 251 VAL VAL SER ASN GLY LYS ALA GLY THR LEU ASP LEU SER SEQRES 10 B 251 LEU THR VAL GLN GLY LYS GLN HIS VAL VAL SER VAL GLU SEQRES 11 B 251 GLU ALA LEU LEU ALA THR GLY GLN TRP LYS SER ILE THR SEQRES 12 B 251 LEU PHE VAL GLN GLU ASP ARG ALA GLN LEU TYR ILE ASP SEQRES 13 B 251 CYS GLU LYS MET GLU ASN ALA GLU LEU ASP VAL PRO ILE SEQRES 14 B 251 GLN SER VAL PHE THR ARG ASP LEU ALA SER ILE ALA ARG SEQRES 15 B 251 LEU ARG ILE ALA LYS GLY GLY VAL ASN ASP ASN PHE GLN SEQRES 16 B 251 GLY VAL LEU GLN ASN VAL ARG PHE VAL PHE GLY THR THR SEQRES 17 B 251 PRO GLU ASP ILE LEU ARG ASN LYS GLY CYS SER SER SER SEQRES 18 B 251 THR SER VAL LEU LEU THR LEU ASP ASN ASN VAL VAL ASN SEQRES 19 B 251 GLY SER SER PRO ALA ILE ARG THR ASN THR GLY HIS HIS SEQRES 20 B 251 HIS HIS HIS HIS HET SO4 A 248 5 HET SO4 A 249 5 HET SO4 A 250 5 HET SO4 B 248 5 HET SO4 B 249 5 HET SO4 B 250 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *87(H2 O) HELIX 1 1 ILE A 15 GLY A 20 1 6 HELIX 2 2 ALA A 21 LYS A 24 5 4 HELIX 3 3 ASP A 45 ILE A 49 5 5 HELIX 4 4 PRO A 53 LYS A 68 1 16 HELIX 5 5 PRO A 164 PHE A 169 1 6 HELIX 6 6 ASP A 172 ILE A 176 1 5 HELIX 7 7 THR A 204 ASN A 211 1 8 HELIX 8 8 ILE B 15 THR B 19 1 5 HELIX 9 9 ASP B 45 ILE B 49 5 5 HELIX 10 10 PRO B 53 LYS B 68 1 16 HELIX 11 11 PRO B 164 VAL B 168 5 5 HELIX 12 12 ASP B 172 SER B 175 5 4 HELIX 13 13 THR B 204 ASN B 211 1 8 SHEET 1 A 4 PHE A 13 ASP A 14 0 SHEET 2 A 4 GLY A 192 VAL A 200 -1 O PHE A 199 N PHE A 13 SHEET 3 A 4 ALA A 40 ILE A 43 -1 N ILE A 43 O GLY A 192 SHEET 4 A 4 ARG A 28 VAL A 31 -1 N VAL A 31 O ALA A 40 SHEET 1 B 6 PHE A 13 ASP A 14 0 SHEET 2 B 6 GLY A 192 VAL A 200 -1 O PHE A 199 N PHE A 13 SHEET 3 B 6 GLY A 69 GLN A 78 -1 N LEU A 73 O ARG A 198 SHEET 4 B 6 LYS A 136 GLN A 143 -1 O LEU A 140 N LEU A 72 SHEET 5 B 6 ARG A 146 ILE A 151 -1 O GLN A 148 N PHE A 141 SHEET 6 B 6 GLU A 157 GLU A 160 -1 O GLU A 157 N LEU A 149 SHEET 1 C 5 LYS A 119 VAL A 125 0 SHEET 2 C 5 THR A 109 VAL A 116 -1 N VAL A 116 O LYS A 119 SHEET 3 C 5 GLN A 97 ASN A 104 -1 N VAL A 102 O ASP A 111 SHEET 4 C 5 ARG A 83 ARG A 91 -1 N GLY A 84 O SER A 103 SHEET 5 C 5 ALA A 177 ILE A 181 -1 O ARG A 180 N ALA A 88 SHEET 1 D 4 PHE B 13 ASP B 14 0 SHEET 2 D 4 GLY B 192 VAL B 200 -1 O PHE B 199 N PHE B 13 SHEET 3 D 4 ALA B 40 ILE B 43 -1 N ILE B 43 O GLY B 192 SHEET 4 D 4 LEU B 30 VAL B 31 -1 N VAL B 31 O ALA B 40 SHEET 1 E 6 PHE B 13 ASP B 14 0 SHEET 2 E 6 GLY B 192 VAL B 200 -1 O PHE B 199 N PHE B 13 SHEET 3 E 6 GLY B 69 GLN B 78 -1 N LEU B 73 O ARG B 198 SHEET 4 E 6 TRP B 135 GLN B 143 -1 O LEU B 140 N LEU B 72 SHEET 5 E 6 ARG B 146 ILE B 151 -1 O GLN B 148 N PHE B 141 SHEET 6 E 6 MET B 156 GLU B 160 -1 O GLU B 157 N LEU B 149 SHEET 1 F 5 LYS B 119 VAL B 125 0 SHEET 2 F 5 THR B 109 VAL B 116 -1 N LEU B 114 O HIS B 121 SHEET 3 F 5 GLN B 97 ASN B 104 -1 N VAL B 102 O ASP B 111 SHEET 4 F 5 ARG B 83 ARG B 91 -1 N GLY B 84 O SER B 103 SHEET 5 F 5 ALA B 177 ILE B 181 -1 O ARG B 180 N ALA B 88 SSBOND 1 CYS A 153 CYS A 214 1555 1555 2.03 SSBOND 2 CYS B 153 CYS B 214 1555 1555 2.67 SITE 1 AC1 5 ARG A 29 VAL A 31 ARG A 42 ARG A 77 SITE 2 AC1 5 HOH A 281 SITE 1 AC2 5 ARG A 42 ARG A 77 MET A 79 GLY A 133 SITE 2 AC2 5 HOH A 310 SITE 1 AC3 3 LYS B 24 PRO B 51 HOH B 265 SITE 1 AC4 3 VAL B 31 ARG B 42 VAL B 193 SITE 1 AC5 2 ARG B 42 GLU B 44 SITE 1 AC6 5 ARG B 42 GLN B 78 MET B 79 GLN B 191 SITE 2 AC6 5 GLY B 192 CRYST1 40.316 41.069 241.779 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004136 0.00000 MASTER 426 0 6 13 30 0 9 6 0 0 0 40 END