HEADER RNA BINDING PROTEIN 06-FEB-07 2OSR TITLE NMR STRUCTURE OF RRM-2 OF YEAST NPL3 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 2 DOMAIN (RESIDUES 194-280); COMPND 5 SYNONYM: MITOCHONDRIAL TARGETING SUPPRESSOR 1 PROTEIN, COMPND 6 NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NOP3, MTS1, NAB1, NPL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-151 KEYWDS NPL3, RRM, SR PROTEIN, MRNA, RNA-BINDING, RNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.DEKA,M.BUCHELI,L.SKRISOVSKA,F.H.ALLAIN,C.MOORE, AUTHOR 2 S.BURATOWSKI,G.VARANI REVDAT 2 24-FEB-09 2OSR 1 VERSN REVDAT 1 18-DEC-07 2OSR 0 JRNL AUTH P.DEKA,M.E.BUCHELI,C.MOORE,S.BURATOWSKI,G.VARANI JRNL TITL STRUCTURE OF THE YEAST SR PROTEIN NPL3 AND JRNL TITL 2 INTERACTION WITH MRNA 3'-END PROCESSING SIGNALS. JRNL REF J.MOL.BIOL. V. 375 136 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18022637 JRNL DOI 10.1016/J.JMB.2007.09.029 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OSR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB041539. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE, REMARK 210 20MM POTASSIUM CHLORIDE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 82 -169.45 -69.82 REMARK 500 1 LYS A 84 56.68 -104.94 REMARK 500 1 PRO A 94 66.26 -69.78 REMARK 500 1 CYS A 97 106.45 -48.96 REMARK 500 1 ASN A 146 86.14 60.24 REMARK 500 1 PRO A 164 -170.94 -69.74 REMARK 500 2 PRO A 82 -178.06 -69.83 REMARK 500 2 PRO A 94 64.64 -69.76 REMARK 500 2 CYS A 97 105.06 -48.71 REMARK 500 2 ASN A 146 86.86 60.77 REMARK 500 2 PRO A 164 -172.11 -69.78 REMARK 500 3 PRO A 82 -171.23 -69.75 REMARK 500 3 PRO A 94 64.76 -69.79 REMARK 500 3 CYS A 97 104.89 -48.80 REMARK 500 3 PHE A 123 69.09 64.53 REMARK 500 3 ASN A 146 88.61 60.00 REMARK 500 3 PRO A 164 -171.90 -69.71 REMARK 500 4 PRO A 82 -175.56 -69.79 REMARK 500 4 ALA A 83 114.21 -170.05 REMARK 500 4 PRO A 94 67.78 -69.80 REMARK 500 4 CYS A 97 106.74 -48.40 REMARK 500 4 ASN A 146 81.76 59.56 REMARK 500 4 PRO A 164 -177.60 -69.74 REMARK 500 5 LEU A 81 76.14 -114.53 REMARK 500 5 PRO A 82 -171.30 -69.77 REMARK 500 5 LYS A 84 56.46 -109.05 REMARK 500 5 TYR A 86 46.84 -142.77 REMARK 500 5 PRO A 94 66.57 -69.76 REMARK 500 5 CYS A 97 105.96 -48.73 REMARK 500 5 ASN A 146 86.55 60.56 REMARK 500 5 PRO A 164 -172.90 -69.79 REMARK 500 6 LEU A 81 74.51 -114.20 REMARK 500 6 PRO A 82 -171.80 -69.81 REMARK 500 6 PRO A 94 64.88 -69.82 REMARK 500 6 CYS A 97 108.98 -48.90 REMARK 500 6 PHE A 123 42.69 37.88 REMARK 500 6 ASN A 146 83.93 55.88 REMARK 500 6 PRO A 164 -175.95 -69.77 REMARK 500 7 PRO A 82 -178.86 -69.76 REMARK 500 7 PRO A 94 62.03 -69.77 REMARK 500 7 CYS A 97 104.82 -48.62 REMARK 500 7 ASN A 146 84.78 58.12 REMARK 500 7 PRO A 164 -176.98 -69.84 REMARK 500 8 LEU A 81 76.60 -164.82 REMARK 500 8 LYS A 84 58.01 -99.92 REMARK 500 8 PRO A 94 66.27 -69.76 REMARK 500 8 CYS A 97 105.56 -48.76 REMARK 500 8 ASN A 146 87.00 61.20 REMARK 500 8 PRO A 164 -176.51 -69.71 REMARK 500 9 PRO A 94 68.01 -69.67 REMARK 500 9 CYS A 97 105.06 -48.85 REMARK 500 9 ASN A 146 87.45 60.91 REMARK 500 9 PRO A 164 -177.85 -69.75 REMARK 500 10 LEU A 81 76.25 55.47 REMARK 500 10 PRO A 82 -171.21 -69.72 REMARK 500 10 LYS A 84 59.15 -104.51 REMARK 500 10 PRO A 94 66.92 -69.76 REMARK 500 10 CYS A 97 104.47 -48.42 REMARK 500 10 ASN A 146 88.68 63.35 REMARK 500 10 PRO A 164 -175.57 -69.78 REMARK 500 11 LEU A 81 72.39 -150.68 REMARK 500 11 PRO A 82 -179.76 -69.80 REMARK 500 11 PRO A 94 63.74 -69.78 REMARK 500 11 CYS A 97 104.68 -48.12 REMARK 500 11 ASP A 122 -160.18 -111.51 REMARK 500 11 PHE A 123 30.78 -88.04 REMARK 500 11 ASN A 146 88.35 60.43 REMARK 500 11 PRO A 164 -171.64 -69.78 REMARK 500 12 LEU A 81 74.85 53.30 REMARK 500 12 ALA A 83 122.98 -179.05 REMARK 500 12 LYS A 84 56.44 -119.71 REMARK 500 12 TYR A 86 46.44 -143.75 REMARK 500 12 ASN A 92 50.48 72.78 REMARK 500 12 PRO A 94 64.86 -69.74 REMARK 500 12 CYS A 97 104.59 -48.67 REMARK 500 12 ASN A 146 69.58 61.42 REMARK 500 12 PRO A 164 -175.14 -69.70 REMARK 500 13 PRO A 82 -172.31 -69.75 REMARK 500 13 ASN A 92 49.68 72.32 REMARK 500 13 PRO A 94 66.12 -69.72 REMARK 500 13 CYS A 97 104.32 -48.88 REMARK 500 13 ASN A 146 86.26 60.52 REMARK 500 13 PRO A 164 -175.15 -69.77 REMARK 500 14 PRO A 82 -172.64 -69.70 REMARK 500 14 LYS A 84 52.73 -99.20 REMARK 500 14 TYR A 86 38.98 -140.17 REMARK 500 14 PRO A 94 64.06 -69.70 REMARK 500 14 CYS A 97 106.47 -48.26 REMARK 500 14 ASP A 122 -165.25 -79.09 REMARK 500 14 ASP A 124 60.37 65.89 REMARK 500 14 ASN A 146 86.56 58.46 REMARK 500 14 PRO A 164 -173.10 -69.82 REMARK 500 15 LEU A 81 74.13 -171.64 REMARK 500 15 ALA A 83 77.82 64.24 REMARK 500 15 ASN A 92 50.40 72.32 REMARK 500 15 PRO A 94 64.57 -69.75 REMARK 500 15 CYS A 97 104.61 -48.67 REMARK 500 15 ASN A 146 71.74 60.18 REMARK 500 15 PRO A 164 -173.05 -69.78 REMARK 500 16 ASN A 92 46.79 71.35 REMARK 500 16 PRO A 94 65.62 -69.71 REMARK 500 16 CYS A 97 104.35 -49.18 REMARK 500 16 ASN A 146 79.01 59.67 REMARK 500 16 PRO A 164 -176.92 -69.79 REMARK 500 17 PRO A 94 63.97 -69.73 REMARK 500 17 CYS A 97 104.79 -48.72 REMARK 500 17 ASN A 146 84.23 57.59 REMARK 500 17 PRO A 164 -173.83 -69.78 REMARK 500 18 ASN A 92 51.35 75.58 REMARK 500 18 PRO A 94 60.51 -69.74 REMARK 500 18 CYS A 97 104.75 -48.84 REMARK 500 18 PRO A 164 -171.36 -69.72 REMARK 500 19 PRO A 94 70.64 -69.76 REMARK 500 19 CYS A 97 106.69 -48.54 REMARK 500 19 ASN A 146 83.31 61.59 REMARK 500 19 PRO A 164 -178.67 -69.71 REMARK 500 20 ASN A 92 47.17 70.43 REMARK 500 20 PRO A 94 68.77 -69.69 REMARK 500 20 CYS A 97 104.88 -48.49 REMARK 500 20 ASP A 122 -158.69 -97.68 REMARK 500 20 PHE A 123 31.34 -89.10 REMARK 500 20 ASN A 146 86.21 61.53 REMARK 500 20 PRO A 164 -175.48 -69.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OSQ RELATED DB: PDB DBREF 2OSR A 80 166 UNP Q01560 NOP3_YEAST 194 280 SEQRES 1 A 87 LYS LEU PRO ALA LYS ARG TYR ARG ILE THR MET LYS ASN SEQRES 2 A 87 LEU PRO GLU GLY CYS SER TRP GLN ASP LEU LYS ASP LEU SEQRES 3 A 87 ALA ARG GLU ASN SER LEU GLU THR THR PHE SER SER VAL SEQRES 4 A 87 ASN THR ARG ASP PHE ASP GLY THR GLY ALA LEU GLU PHE SEQRES 5 A 87 PRO SER GLU GLU ILE LEU VAL GLU ALA LEU GLU ARG LEU SEQRES 6 A 87 ASN ASN ILE GLU PHE ARG GLY SER VAL ILE THR VAL GLU SEQRES 7 A 87 ARG ASP ASP ASN PRO PRO PRO ILE ARG HELIX 1 1 SER A 98 ASN A 109 1 12 HELIX 2 2 SER A 133 ASN A 145 1 13 SHEET 1 A 5 PHE A 115 VAL A 118 0 SHEET 2 A 5 GLY A 127 GLU A 130 -1 O ALA A 128 N SER A 117 SHEET 3 A 5 ARG A 87 LYS A 91 -1 N ILE A 88 O LEU A 129 SHEET 4 A 5 SER A 152 GLU A 157 -1 O GLU A 157 N THR A 89 SHEET 5 A 5 ILE A 147 PHE A 149 -1 N PHE A 149 O SER A 152 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 191 0 0 2 5 0 0 6 0 0 0 7 END