HEADER HYDROLASE 18-JAN-07 2OL0 TITLE HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 GENE: DUT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FOLD, JELLY-ROLL, SUPERFAMILY, DUTPASE-LIKE, FORMS TIGHT TRIMER KEYWDS 2 THROUGH AN ADDITIONAL BETA-SHEET IN EACH SUBUNIT, SUBUNIT BETA- KEYWDS 3 SHEETS ARE ORTHOGONALLY PACKED AROUND THE THREE-FOLD AXIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,D.CHATTOPADHYAY REVDAT 4 20-OCT-21 2OL0 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2OL0 1 VERSN REVDAT 2 24-FEB-09 2OL0 1 VERSN REVDAT 1 01-MAY-07 2OL0 0 JRNL AUTH A.SAMAL,N.SCHORMANN,W.J.COOK,L.J.DELUCAS,D.CHATTOPADHYAY JRNL TITL STRUCTURES OF VACCINIA VIRUS DUTPASE AND ITS NUCLEOTIDE JRNL TITL 2 COMPLEXES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 571 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452782 JRNL DOI 10.1107/S0907444907007871 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0011 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1653 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3092 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4184 ; 1.188 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 5.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;30.469 ;23.262 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;14.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;21.186 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2346 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1279 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2058 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 250 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1904 ; 0.348 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3004 ; 0.599 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 1.022 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1180 ; 1.698 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): -20.641 -28.0630 6.7980 REMARK 3 T TENSOR REMARK 3 T11: -0.1205 T22: -0.0848 REMARK 3 T33: -0.0206 T12: 0.0003 REMARK 3 T13: -0.0187 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2603 L22: 1.1212 REMARK 3 L33: 2.8215 L12: -0.1243 REMARK 3 L13: 0.1980 L23: 0.4610 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0171 S13: -0.0041 REMARK 3 S21: -0.1260 S22: 0.0894 S23: -0.1430 REMARK 3 S31: 0.2480 S32: 0.0287 S33: 0.2411 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): -40.102 -26.0770 4.5840 REMARK 3 T TENSOR REMARK 3 T11: -0.1189 T22: -0.0963 REMARK 3 T33: -0.0154 T12: 0.0067 REMARK 3 T13: 0.0208 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.2751 L22: 2.3926 REMARK 3 L33: 2.1257 L12: -0.5940 REMARK 3 L13: 0.5094 L23: 0.2206 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.0456 S13: 0.0598 REMARK 3 S21: -0.1559 S22: -0.0245 S23: 0.3621 REMARK 3 S31: -0.0394 S32: 0.0654 S33: -0.2256 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 131 REMARK 3 ORIGIN FOR THE GROUP (A): -29.464 -34.3690 -9.7670 REMARK 3 T TENSOR REMARK 3 T11: -0.0804 T22: -0.1157 REMARK 3 T33: -0.0629 T12: 0.0124 REMARK 3 T13: -0.0089 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.3836 L22: 1.8783 REMARK 3 L33: 2.8384 L12: -0.6743 REMARK 3 L13: -0.2384 L23: 0.5606 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.0290 S13: 0.0052 REMARK 3 S21: 0.0103 S22: -0.1078 S23: 0.0738 REMARK 3 S31: -0.1479 S32: -0.0161 S33: 0.0943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : 0.34700 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 0.1M TRIS, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.44000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.72000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.08000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.36000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HOMO-TRIMER WITH MONOMERS REMARK 300 RELATED BY NON-CRYSTALLOGRAPHIC SYMMETRY. THIS HOMO-TRIMER REMARK 300 CONSTITUTES THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 THR A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 PHE A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 THR A 144 REMARK 465 GLY A 145 REMARK 465 LEU A 146 REMARK 465 ARG A 147 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ASN B 3 REMARK 465 MET B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ASN B 7 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 THR B 134 REMARK 465 ASN B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 ASP B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 140 REMARK 465 PHE B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 THR B 144 REMARK 465 GLY B 145 REMARK 465 LEU B 146 REMARK 465 ARG B 147 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 ASN C 3 REMARK 465 MET C 4 REMARK 465 ASN C 5 REMARK 465 ILE C 6 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 THR C 134 REMARK 465 ASN C 135 REMARK 465 ARG C 136 REMARK 465 GLY C 137 REMARK 465 ASP C 138 REMARK 465 GLN C 139 REMARK 465 GLY C 140 REMARK 465 PHE C 141 REMARK 465 GLY C 142 REMARK 465 SER C 143 REMARK 465 THR C 144 REMARK 465 GLY C 145 REMARK 465 LEU C 146 REMARK 465 ARG C 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN C 129 CD GLN C 129 OE1 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 122 73.69 -119.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 25 OE1 REMARK 620 2 HOH B1233 O 87.1 REMARK 620 3 HOH B1269 O 77.5 155.2 REMARK 620 4 DUD C1203 O2A 147.3 72.8 129.1 REMARK 620 5 DUD C1203 O1B 104.3 124.8 78.3 69.5 REMARK 620 6 HOH C1229 O 89.8 84.7 76.1 112.9 147.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD C 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OKD RELATED DB: PDB REMARK 900 APO-ENZYME OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OKB RELATED DB: PDB REMARK 900 N-TERMINALLY TRUNCATED VERSION OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OKE RELATED DB: PDB REMARK 900 STRUCTURE OF VACCINIA VIRUS DUTPASE WITH SUBSTRATE ANALOG REMARK 900 RELATED ID: 2OL1 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE DBREF 2OL0 A 1 147 GB 29692147 AAO89320 1 147 DBREF 2OL0 B 1 147 GB 29692147 AAO89320 1 147 DBREF 2OL0 C 1 147 GB 29692147 AAO89320 1 147 SEQADV 2OL0 GLY A 28 GB 29692147 TYR 28 ENGINEERED MUTATION SEQADV 2OL0 GLY B 28 GB 29692147 TYR 28 ENGINEERED MUTATION SEQADV 2OL0 GLY C 28 GB 29692147 TYR 28 ENGINEERED MUTATION SEQRES 1 A 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 A 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 A 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 A 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 A 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 A 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 A 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 A 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 A 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 A 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 A 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 A 147 THR GLY LEU ARG SEQRES 1 B 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 B 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 B 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 B 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 B 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 B 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 B 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 B 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 B 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 B 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 B 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 B 147 THR GLY LEU ARG SEQRES 1 C 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 C 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 C 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 C 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 C 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 C 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 C 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 C 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 C 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 C 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 C 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 C 147 THR GLY LEU ARG HET CL A 300 1 HET MG B 500 1 HET DUD B1202 24 HET EDO B 403 4 HET DUD C1201 24 HET DUD C1203 24 HET EDO C 401 4 HET EDO C 402 4 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM DUD DEOXYURIDINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CL CL 1- FORMUL 5 MG MG 2+ FORMUL 6 DUD 3(C9 H14 N2 O11 P2) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 12 HOH *206(H2 O) HELIX 1 1 ARG A 69 LYS A 75 1 7 HELIX 2 2 ARG B 69 LYS B 75 1 7 HELIX 3 3 ARG C 69 LYS C 75 1 7 SHEET 1 A 3 ILE A 54 SER A 57 0 SHEET 2 A 3 VAL A 10 LYS A 14 -1 N VAL A 13 O SER A 55 SHEET 3 A 3 LEU B 125 GLU B 127 1 O GLU B 126 N VAL A 10 SHEET 1 B 6 TYR A 32 TYR A 35 0 SHEET 2 B 6 ARG A 111 TYR A 121 -1 O LEU A 115 N TYR A 32 SHEET 3 B 6 CYS A 62 ALA A 67 -1 N ARG A 65 O ILE A 116 SHEET 4 B 6 VAL A 83 ILE A 84 -1 O ILE A 84 N GLY A 64 SHEET 5 B 6 CYS A 62 ALA A 67 -1 N GLY A 64 O ILE A 84 SHEET 6 B 6 ARG A 111 TYR A 121 -1 O ILE A 116 N ARG A 65 SHEET 1 C 7 ARG C 111 TYR C 121 0 SHEET 2 C 7 ARG B 111 TYR B 121 -1 N TYR B 117 O TYR C 121 SHEET 3 C 7 TYR B 32 TYR B 35 -1 N TYR B 32 O LEU B 115 SHEET 4 C 7 ARG B 111 TYR B 121 -1 O LEU B 115 N TYR B 32 SHEET 5 C 7 CYS B 62 ALA B 67 -1 N ALA B 67 O GLN B 114 SHEET 6 C 7 VAL B 83 ILE B 84 -1 O ILE B 84 N GLY B 64 SHEET 7 C 7 CYS B 62 ALA B 67 -1 N GLY B 64 O ILE B 84 SHEET 1 D 9 ARG B 111 TYR B 121 0 SHEET 2 D 9 ARG A 111 TYR A 121 -1 N TYR A 117 O TYR B 121 SHEET 3 D 9 ARG C 111 TYR C 121 -1 O TYR C 117 N TYR A 121 SHEET 4 D 9 TYR C 32 TYR C 35 -1 N TYR C 32 O LEU C 115 SHEET 5 D 9 ARG C 111 TYR C 121 -1 O LEU C 115 N TYR C 32 SHEET 6 D 9 CYS C 62 ALA C 67 -1 N ARG C 65 O ILE C 116 SHEET 7 D 9 VAL C 83 ILE C 84 -1 O ILE C 84 N GLY C 64 SHEET 8 D 9 CYS C 62 ALA C 67 -1 N GLY C 64 O ILE C 84 SHEET 9 D 9 ARG C 111 TYR C 121 -1 O ILE C 116 N ARG C 65 SHEET 1 E 2 TYR A 40 ILE A 42 0 SHEET 2 E 2 PHE A 104 VAL A 106 -1 O VAL A 106 N TYR A 40 SHEET 1 F 3 ARG A 47 LYS A 51 0 SHEET 2 F 3 GLY A 93 ASN A 98 -1 O VAL A 94 N ILE A 50 SHEET 3 F 3 ILE A 77 GLY A 80 -1 N ASP A 78 O ILE A 97 SHEET 1 G 3 LEU A 125 GLU A 127 0 SHEET 2 G 3 VAL C 10 LYS C 14 1 O VAL C 10 N GLU A 126 SHEET 3 G 3 ILE C 54 SER C 57 -1 O SER C 55 N VAL C 13 SHEET 1 H 3 ILE B 54 SER B 57 0 SHEET 2 H 3 VAL B 10 LYS B 14 -1 N VAL B 13 O SER B 55 SHEET 3 H 3 LEU C 125 GLU C 127 1 O GLU C 126 N VAL B 10 SHEET 1 I 2 TYR B 40 ILE B 42 0 SHEET 2 I 2 PHE B 104 VAL B 106 -1 O PHE B 104 N ILE B 42 SHEET 1 J 3 GLU B 46 LYS B 51 0 SHEET 2 J 3 GLY B 93 ASN B 98 -1 O VAL B 94 N ILE B 50 SHEET 3 J 3 ILE B 77 GLY B 80 -1 N ASP B 78 O ILE B 97 SHEET 1 K 2 TYR C 40 ILE C 42 0 SHEET 2 K 2 PHE C 104 VAL C 106 -1 O VAL C 106 N TYR C 40 SHEET 1 L 3 ARG C 47 LYS C 51 0 SHEET 2 L 3 GLY C 93 ASN C 98 -1 O VAL C 94 N ILE C 50 SHEET 3 L 3 ILE C 77 GLY C 80 -1 N ASP C 78 O ILE C 97 LINK OE1 GLN B 25 MG MG B 500 1555 1555 2.98 LINK MG MG B 500 O HOH B1233 1555 1555 3.01 LINK MG MG B 500 O HOH B1269 1555 1555 3.13 LINK MG MG B 500 O2A DUD C1203 1555 1555 2.63 LINK MG MG B 500 O1B DUD C1203 1555 1555 2.31 LINK MG MG B 500 O HOH C1229 1555 1555 2.77 SITE 1 AC1 5 GLN A 118 ARG B 65 GLN B 118 TYR C 63 SITE 2 AC1 5 GLN C 118 SITE 1 AC2 4 GLN B 25 HOH B1233 DUD C1203 HOH C1229 SITE 1 AC3 12 GLY A 82 VAL A 83 ILE A 84 ASP A 85 SITE 2 AC3 12 TYR A 88 GLY A 93 ARG C 69 SER C 70 SITE 3 AC3 12 GLY C 71 ARG C 111 HOH C1207 HOH C1276 SITE 1 AC4 13 ARG A 69 SER A 70 GLY A 71 ARG A 111 SITE 2 AC4 13 HOH A 360 GLY B 82 VAL B 83 ILE B 84 SITE 3 AC4 13 ASP B 85 TYR B 88 GLY B 93 ILE B 95 SITE 4 AC4 13 HOH B1203 SITE 1 AC5 16 ARG B 69 SER B 70 GLY B 71 EDO B 403 SITE 2 AC5 16 MG B 500 GLY C 82 VAL C 83 ILE C 84 SITE 3 AC5 16 ASP C 85 TYR C 88 GLY C 93 ILE C 95 SITE 4 AC5 16 EDO C 401 HOH C1208 HOH C1242 HOH C1269 SITE 1 AC6 5 SER B 26 ASP C 85 ASP C 87 TYR C 88 SITE 2 AC6 5 DUD C1203 SITE 1 AC7 6 GLN A 118 ARG A 119 GLN B 118 ARG B 119 SITE 2 AC7 6 GLN C 118 ARG C 119 SITE 1 AC8 6 SER B 70 HOH B1251 HOH B1255 LEU C 49 SITE 2 AC8 6 GLY C 93 DUD C1203 CRYST1 119.660 119.660 50.160 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008357 0.004825 0.000000 0.00000 SCALE2 0.000000 0.009650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019936 0.00000 MASTER 475 0 8 3 46 0 20 6 0 0 0 36 END