HEADER HYDROLASE 16-JAN-07 2OKD TITLE HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 GENE: DUT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FOLD, JELLY-ROLL, SUPERFAMILY, DUTPASE-LIKE, FORMS TIGHT TRIMER KEYWDS 2 THROUGH AN ADDITIONAL BETA-SHEET IN EACH SUBUNIT, SUBUNIT BETA- KEYWDS 3 SHEETS ARE ORTHOGONALLY PACKED AROUND THE THREE-FOLD AXIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,D.CHATTOPADHYAY REVDAT 4 20-OCT-21 2OKD 1 REMARK SEQADV REVDAT 3 13-JUL-11 2OKD 1 VERSN REVDAT 2 24-FEB-09 2OKD 1 VERSN REVDAT 1 01-MAY-07 2OKD 0 JRNL AUTH A.SAMAL,N.SCHORMANN,W.J.COOK,L.J.DELUCAS,D.CHATTOPADHYAY JRNL TITL STRUCTURES OF VACCINIA VIRUS DUTPASE AND ITS NUCLEOTIDE JRNL TITL 2 COMPLEXES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 571 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452782 JRNL DOI 10.1107/S0907444907007871 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0011 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 14683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.581 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3021 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4084 ; 1.011 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;32.271 ;23.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;14.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2327 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1221 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2043 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 0.300 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3031 ; 0.549 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1240 ; 0.751 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1052 ; 1.294 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0550 -31.9770 6.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.0868 T22: -0.0667 REMARK 3 T33: 0.0202 T12: -0.0294 REMARK 3 T13: 0.0058 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.4260 L22: 1.4917 REMARK 3 L33: 1.7188 L12: 0.3263 REMARK 3 L13: -0.1682 L23: 0.2103 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0171 S13: -0.0050 REMARK 3 S21: -0.2011 S22: 0.0692 S23: 0.0115 REMARK 3 S31: 0.1145 S32: -0.1901 S33: 0.1347 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3580 -47.7120 4.1030 REMARK 3 T TENSOR REMARK 3 T11: -0.0853 T22: -0.1010 REMARK 3 T33: 0.0225 T12: -0.0092 REMARK 3 T13: 0.0214 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.3895 L22: 1.0749 REMARK 3 L33: 0.9943 L12: 0.5432 REMARK 3 L13: 0.2560 L23: 0.2970 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0467 S13: 0.0474 REMARK 3 S21: -0.0115 S22: -0.2063 S23: 0.0226 REMARK 3 S31: 0.1391 S32: 0.0775 S33: -0.0524 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 131 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0760 -42.8210 -10.107 REMARK 3 T TENSOR REMARK 3 T11: -0.0845 T22: -0.0740 REMARK 3 T33: 0.0005 T12: 0.0017 REMARK 3 T13: 0.0083 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.4651 L22: 1.0323 REMARK 3 L33: 2.1284 L12: 0.4500 REMARK 3 L13: -0.3241 L23: -0.7747 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.0083 S13: 0.0327 REMARK 3 S21: 0.0562 S22: -0.0318 S23: -0.0597 REMARK 3 S31: -0.0439 S32: 0.0129 S33: -0.0426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : 0.13400 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : 0.42300 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OKB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 0.1M TRIS, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.76667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.15000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.38333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.91667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HOMO-TRIMER WITH MONOMERS REMARK 300 RELATED BY NON-CRYSTALLOGRAPHIC SYMMETRY. THIS HOMO-TRIMER REMARK 300 CONSTITUTES THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 SER A 133 REMARK 465 THR A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 PHE A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 THR A 144 REMARK 465 GLY A 145 REMARK 465 LEU A 146 REMARK 465 ARG A 147 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ASN B 3 REMARK 465 MET B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 THR B 134 REMARK 465 ASN B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 ASP B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 140 REMARK 465 PHE B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 THR B 144 REMARK 465 GLY B 145 REMARK 465 LEU B 146 REMARK 465 ARG B 147 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 ASN C 3 REMARK 465 MET C 4 REMARK 465 ASN C 5 REMARK 465 ILE C 6 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 THR C 134 REMARK 465 ASN C 135 REMARK 465 ARG C 136 REMARK 465 GLY C 137 REMARK 465 ASP C 138 REMARK 465 GLN C 139 REMARK 465 GLY C 140 REMARK 465 PHE C 141 REMARK 465 GLY C 142 REMARK 465 SER C 143 REMARK 465 THR C 144 REMARK 465 GLY C 145 REMARK 465 LEU C 146 REMARK 465 ARG C 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 122 76.92 -117.46 REMARK 500 LEU A 131 -96.87 -88.00 REMARK 500 TYR B 122 73.41 -112.98 REMARK 500 TYR C 122 76.49 -114.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OKB RELATED DB: PDB REMARK 900 N-TERMINALLY TRUNCATED VERSION OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 1Q5U RELATED DB: PDB REMARK 900 HUMAN DUTPASE REMARK 900 RELATED ID: 2OL1 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OKE RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OL0 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE DBREF 2OKD A 1 147 GB 29692147 AAO89320 1 147 DBREF 2OKD B 1 147 GB 29692147 AAO89320 1 147 DBREF 2OKD C 1 147 GB 29692147 AAO89320 1 147 SEQADV 2OKD GLY A 28 UNP 29692147 PHE 28 ENGINEERED MUTATION SEQADV 2OKD GLY B 28 UNP 29692147 PHE 28 ENGINEERED MUTATION SEQADV 2OKD GLY C 28 UNP 29692147 PHE 28 ENGINEERED MUTATION SEQRES 1 A 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 A 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 A 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 A 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 A 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 A 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 A 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 A 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 A 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 A 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 A 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 A 147 THR GLY LEU ARG SEQRES 1 B 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 B 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 B 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 B 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 B 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 B 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 B 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 B 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 B 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 B 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 B 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 B 147 THR GLY LEU ARG SEQRES 1 C 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 C 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 C 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 C 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 C 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 C 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 C 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 C 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 C 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 C 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 C 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 C 147 THR GLY LEU ARG HET CL A 200 1 HET EDO A 201 4 HET EDO A 202 4 HET EDO A 204 4 HET EDO B 203 4 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CL CL 1- FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *118(H2 O) HELIX 1 1 ARG A 69 LEU A 74 1 6 HELIX 2 2 ARG B 69 LEU B 74 1 6 HELIX 3 3 ARG C 69 LYS C 75 1 7 SHEET 1 A 3 ILE A 54 MET A 56 0 SHEET 2 A 3 VAL A 10 LYS A 14 -1 N VAL A 13 O SER A 55 SHEET 3 A 3 LEU B 125 GLU B 127 1 O GLU B 126 N VAL A 10 SHEET 1 B 5 TYR A 32 TYR A 35 0 SHEET 2 B 5 ARG A 111 TYR A 121 -1 O LEU A 115 N TYR A 32 SHEET 3 B 5 CYS A 62 ALA A 67 -1 N TYR A 63 O GLN A 118 SHEET 4 B 5 VAL A 83 ILE A 84 -1 O ILE A 84 N GLY A 64 SHEET 5 B 5 CYS A 62 ALA A 67 -1 N GLY A 64 O ILE A 84 SHEET 1 C 7 ARG A 111 TYR A 121 0 SHEET 2 C 7 ARG B 111 TYR B 121 -1 O ARG B 119 N ARG A 119 SHEET 3 C 7 TYR B 32 TYR B 35 -1 N TYR B 32 O LEU B 115 SHEET 4 C 7 ARG C 111 TYR C 121 0 SHEET 5 C 7 CYS C 62 ALA C 67 -1 N ARG C 65 O ILE C 116 SHEET 6 C 7 VAL C 83 ILE C 84 -1 O ILE C 84 N GLY C 64 SHEET 7 C 7 CYS C 62 ALA C 67 -1 N GLY C 64 O ILE C 84 SHEET 1 D 6 ARG C 111 TYR C 121 0 SHEET 2 D 6 TYR C 32 TYR C 35 -1 N TYR C 32 O LEU C 115 SHEET 3 D 6 ARG C 111 TYR C 121 -1 O LEU C 115 N TYR C 32 SHEET 4 D 6 ARG B 111 TYR B 121 -1 N TYR B 117 O TYR C 121 SHEET 5 D 6 CYS B 62 ALA B 67 -1 N ALA B 67 O GLN B 114 SHEET 6 D 6 VAL B 83 ILE B 84 -1 O ILE B 84 N GLY B 64 SHEET 1 E 2 TYR A 40 ILE A 42 0 SHEET 2 E 2 PHE A 104 VAL A 106 -1 O VAL A 106 N TYR A 40 SHEET 1 F 3 GLU A 46 LYS A 51 0 SHEET 2 F 3 GLY A 93 ASN A 98 -1 O VAL A 94 N ILE A 50 SHEET 3 F 3 ILE A 77 GLY A 80 -1 N ASP A 78 O ILE A 97 SHEET 1 G 3 LEU A 125 GLU A 127 0 SHEET 2 G 3 VAL C 10 LYS C 14 1 O VAL C 10 N GLU A 126 SHEET 3 G 3 ILE C 54 MET C 56 -1 O SER C 55 N VAL C 13 SHEET 1 H 3 ILE B 54 MET B 56 0 SHEET 2 H 3 VAL B 10 LYS B 14 -1 N VAL B 13 O SER B 55 SHEET 3 H 3 LEU C 125 GLU C 127 1 O GLU C 126 N VAL B 10 SHEET 1 I 2 TYR B 40 ILE B 42 0 SHEET 2 I 2 PHE B 104 VAL B 106 -1 O PHE B 104 N ILE B 42 SHEET 1 J 3 GLU B 46 LYS B 51 0 SHEET 2 J 3 GLY B 93 ASN B 98 -1 O VAL B 94 N ILE B 50 SHEET 3 J 3 ILE B 77 GLY B 80 -1 N GLY B 80 O ILE B 95 SHEET 1 K 2 TYR C 40 ILE C 42 0 SHEET 2 K 2 PHE C 104 VAL C 106 -1 O PHE C 104 N ILE C 42 SHEET 1 L 3 ARG C 47 LYS C 51 0 SHEET 2 L 3 GLY C 93 ASN C 98 -1 O VAL C 94 N ILE C 50 SHEET 3 L 3 ILE C 77 GLY C 80 -1 N ASP C 78 O ILE C 97 SITE 1 AC1 6 TYR A 63 ARG A 65 GLN A 118 ARG B 65 SITE 2 AC1 6 GLN B 118 GLN C 118 SITE 1 AC2 4 ASP A 78 HOH A 212 ILE B 79 ILE B 97 SITE 1 AC3 5 GLY A 82 GLY A 93 ILE A 95 HOH A 210 SITE 2 AC3 5 SER C 70 SITE 1 AC4 5 SER A 70 GLY B 82 GLY B 93 ILE B 95 SITE 2 AC4 5 HOH B 218 SITE 1 AC5 8 TYR A 63 GLN A 118 ARG A 119 ILE A 120 SITE 2 AC5 8 GLN B 118 ARG B 119 GLN C 118 ARG C 119 CRYST1 120.010 120.010 50.300 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008333 0.004811 0.000000 0.00000 SCALE2 0.000000 0.009622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019881 0.00000 MASTER 435 0 5 3 42 0 9 6 0 0 0 36 END