HEADER FLUORESCENT PROTEIN 12-JAN-07 2OJK TITLE CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN FROM ZOANTHUS SP AT 2.2 TITLE 2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE FLUORESCENT CHROMOPROTEIN FP506; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZFP506; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOANTHUS SP.; SOURCE 3 ORGANISM_TAXID: 105402; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30-ZGFP506 KEYWDS GREEN FLUORESCENT PROTEIN, ZOANTHUS SP, CHROMOPHORE STRUCTURE, KEYWDS 2 FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.V.PLETNEVA,S.V.PLETNEV,T.V.TIKHONOVA,V.Z.PLETNEV REVDAT 5 18-OCT-17 2OJK 1 REMARK REVDAT 4 13-JUL-11 2OJK 1 VERSN REVDAT 3 24-FEB-09 2OJK 1 VERSN REVDAT 2 02-OCT-07 2OJK 1 JRNL REVDAT 1 25-SEP-07 2OJK 0 JRNL AUTH N.PLETNEVA,V.PLETNEV,T.TIKHONOVA,A.A.PAKHOMOV,V.POPOV, JRNL AUTH 2 V.I.MARTYNOV,A.WLODAWER,Z.DAUTER,S.PLETNEV JRNL TITL REFINED CRYSTAL STRUCTURES OF RED AND GREEN FLUORESCENT JRNL TITL 2 PROTEINS FROM THE BUTTON POLYP ZOANTHUS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1082 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17881826 JRNL DOI 10.1107/S0907444907042461 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 42583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2197 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3011 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3739 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5055 ; 1.869 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 7.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;36.283 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;15.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2880 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1587 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2444 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2339 ; 1.211 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3651 ; 2.018 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 3.071 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 4.784 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 1.8M TRI REMARK 280 -AMMONIUM CITRATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 180.60600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.30300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 180.60600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.30300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 180.60600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 90.30300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 180.60600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.30300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -102.53600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -102.53600 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -90.30300 REMARK 350 BIOMT1 3 0.500000 -0.866025 0.000000 -51.26800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -88.79878 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -90.30300 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -51.26800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -88.79878 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -90.30300 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -51.26800 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -88.79878 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -90.30300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 176 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 102.37 -50.49 REMARK 500 ASP A 23 53.29 39.62 REMARK 500 ASN A 130 33.75 70.65 REMARK 500 ASP A 143 50.98 -150.47 REMARK 500 ASN A 144 156.44 76.23 REMARK 500 ASP A 211 -161.23 -125.94 REMARK 500 ASP B 143 53.69 -145.78 REMARK 500 ASN B 144 161.74 74.34 REMARK 500 ARG B 209 37.82 -142.42 REMARK 500 ASP B 211 -150.40 -130.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 2OJK A 1 231 UNP Q9U6Y5 GFPL1_ZOASP 1 231 DBREF 2OJK B 1 231 UNP Q9U6Y5 GFPL1_ZOASP 1 231 SEQADV 2OJK NYG A 66 UNP Q9U6Y5 ASN 66 CHROMOPHORE SEQADV 2OJK NYG A 66 UNP Q9U6Y5 TYR 67 CHROMOPHORE SEQADV 2OJK NYG A 66 UNP Q9U6Y5 GLY 68 CHROMOPHORE SEQADV 2OJK NYG B 66 UNP Q9U6Y5 ASN 66 CHROMOPHORE SEQADV 2OJK NYG B 66 UNP Q9U6Y5 TYR 67 CHROMOPHORE SEQADV 2OJK NYG B 66 UNP Q9U6Y5 GLY 68 CHROMOPHORE SEQRES 1 A 229 MET ALA GLN SER LYS HIS GLY LEU THR LYS GLU MET THR SEQRES 2 A 229 MET LYS TYR ARG MET GLU GLY CYS VAL ASP GLY HIS LYS SEQRES 3 A 229 PHE VAL ILE THR GLY GLU GLY ILE GLY TYR PRO PHE LYS SEQRES 4 A 229 GLY LYS GLN ALA ILE ASN LEU CYS VAL VAL GLU GLY GLY SEQRES 5 A 229 PRO LEU PRO PHE ALA GLU ASP ILE LEU SER ALA ALA PHE SEQRES 6 A 229 NYG ASN ARG VAL PHE THR GLU TYR PRO GLN ASP ILE VAL SEQRES 7 A 229 ASP TYR PHE LYS ASN SER CYS PRO ALA GLY TYR THR TRP SEQRES 8 A 229 ASP ARG SER PHE LEU PHE GLU ASP GLY ALA VAL CYS ILE SEQRES 9 A 229 CYS ASN ALA ASP ILE THR VAL SER VAL GLU GLU ASN CYS SEQRES 10 A 229 MET TYR HIS GLU SER LYS PHE TYR GLY VAL ASN PHE PRO SEQRES 11 A 229 ALA ASP GLY PRO VAL MET LYS LYS MET THR ASP ASN TRP SEQRES 12 A 229 GLU PRO SER CYS GLU LYS ILE ILE PRO VAL PRO LYS GLN SEQRES 13 A 229 GLY ILE LEU LYS GLY ASP VAL SER MET TYR LEU LEU LEU SEQRES 14 A 229 LYS ASP GLY GLY ARG LEU ARG CYS GLN PHE ASP THR VAL SEQRES 15 A 229 TYR LYS ALA LYS SER VAL PRO ARG LYS MET PRO ASP TRP SEQRES 16 A 229 HIS PHE ILE GLN HIS LYS LEU THR ARG GLU ASP ARG SER SEQRES 17 A 229 ASP ALA LYS ASN GLN LYS TRP HIS LEU THR GLU HIS ALA SEQRES 18 A 229 ILE ALA SER GLY SER ALA LEU PRO SEQRES 1 B 229 MET ALA GLN SER LYS HIS GLY LEU THR LYS GLU MET THR SEQRES 2 B 229 MET LYS TYR ARG MET GLU GLY CYS VAL ASP GLY HIS LYS SEQRES 3 B 229 PHE VAL ILE THR GLY GLU GLY ILE GLY TYR PRO PHE LYS SEQRES 4 B 229 GLY LYS GLN ALA ILE ASN LEU CYS VAL VAL GLU GLY GLY SEQRES 5 B 229 PRO LEU PRO PHE ALA GLU ASP ILE LEU SER ALA ALA PHE SEQRES 6 B 229 NYG ASN ARG VAL PHE THR GLU TYR PRO GLN ASP ILE VAL SEQRES 7 B 229 ASP TYR PHE LYS ASN SER CYS PRO ALA GLY TYR THR TRP SEQRES 8 B 229 ASP ARG SER PHE LEU PHE GLU ASP GLY ALA VAL CYS ILE SEQRES 9 B 229 CYS ASN ALA ASP ILE THR VAL SER VAL GLU GLU ASN CYS SEQRES 10 B 229 MET TYR HIS GLU SER LYS PHE TYR GLY VAL ASN PHE PRO SEQRES 11 B 229 ALA ASP GLY PRO VAL MET LYS LYS MET THR ASP ASN TRP SEQRES 12 B 229 GLU PRO SER CYS GLU LYS ILE ILE PRO VAL PRO LYS GLN SEQRES 13 B 229 GLY ILE LEU LYS GLY ASP VAL SER MET TYR LEU LEU LEU SEQRES 14 B 229 LYS ASP GLY GLY ARG LEU ARG CYS GLN PHE ASP THR VAL SEQRES 15 B 229 TYR LYS ALA LYS SER VAL PRO ARG LYS MET PRO ASP TRP SEQRES 16 B 229 HIS PHE ILE GLN HIS LYS LEU THR ARG GLU ASP ARG SER SEQRES 17 B 229 ASP ALA LYS ASN GLN LYS TRP HIS LEU THR GLU HIS ALA SEQRES 18 B 229 ILE ALA SER GLY SER ALA LEU PRO MODRES 2OJK NYG A 66 ASN MODRES 2OJK NYG A 66 TYR MODRES 2OJK NYG A 66 GLY MODRES 2OJK NYG B 66 ASN MODRES 2OJK NYG B 66 TYR MODRES 2OJK NYG B 66 GLY HET NYG A 66 23 HET NYG B 66 23 HETNAM NYG [(4Z)-2-[(1S)-1,3-DIAMINO-3-OXOPROPYL]-4-(4- HETNAM 2 NYG HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NYG YL]ACETIC ACID HETSYN NYG CHROMOPHORE (ASN-TYR-GLY) FORMUL 1 NYG 2(C15 H16 N4 O5) FORMUL 3 HOH *253(H2 O) HELIX 1 1 SER A 4 LEU A 8 5 5 HELIX 2 2 ALA A 57 SER A 62 5 6 HELIX 3 3 PHE A 83 CYS A 87 5 5 HELIX 4 4 GLY A 135 LYS A 140 1 6 HELIX 5 5 SER B 4 LEU B 8 5 5 HELIX 6 6 ALA B 57 SER B 62 5 6 HELIX 7 7 ASP B 81 SER B 86 1 6 SHEET 1 A13 THR A 142 TRP A 145 0 SHEET 2 A13 LEU A 161 LEU A 171 -1 O LEU A 170 N ASP A 143 SHEET 3 A13 ARG A 176 ALA A 187 -1 O CYS A 179 N MET A 167 SHEET 4 A13 TYR A 91 PHE A 99 -1 N THR A 92 O LYS A 186 SHEET 5 A13 VAL A 104 SER A 114 -1 O CYS A 107 N ARG A 95 SHEET 6 A13 CYS A 119 VAL A 129 -1 O TYR A 121 N THR A 112 SHEET 7 A13 MET A 12 VAL A 22 1 N THR A 13 O MET A 120 SHEET 8 A13 HIS A 25 TYR A 36 -1 O ILE A 29 N MET A 18 SHEET 9 A13 LYS A 41 GLU A 50 -1 O LYS A 41 N TYR A 36 SHEET 10 A13 LYS A 216 SER A 226 -1 O LEU A 219 N ILE A 44 SHEET 11 A13 HIS A 198 ASP A 208 -1 N PHE A 199 O SER A 226 SHEET 12 A13 SER A 148 PRO A 154 -1 N ILE A 152 O HIS A 198 SHEET 13 A13 LEU A 161 LEU A 171 -1 O LYS A 162 N ILE A 153 SHEET 1 B13 THR B 142 TRP B 145 0 SHEET 2 B13 LEU B 161 LEU B 171 -1 O LEU B 170 N ASP B 143 SHEET 3 B13 ARG B 176 ALA B 187 -1 O PHE B 181 N VAL B 165 SHEET 4 B13 TYR B 91 PHE B 99 -1 N THR B 92 O LYS B 186 SHEET 5 B13 VAL B 104 SER B 114 -1 O CYS B 107 N ARG B 95 SHEET 6 B13 CYS B 119 VAL B 129 -1 O TYR B 127 N ILE B 106 SHEET 7 B13 MET B 12 VAL B 22 1 N THR B 13 O MET B 120 SHEET 8 B13 HIS B 25 TYR B 36 -1 O ILE B 29 N MET B 18 SHEET 9 B13 LYS B 41 GLU B 50 -1 O CYS B 47 N THR B 30 SHEET 10 B13 LYS B 216 SER B 226 -1 O TRP B 217 N LEU B 46 SHEET 11 B13 HIS B 198 ASP B 208 -1 N PHE B 199 O SER B 226 SHEET 12 B13 SER B 148 PRO B 154 -1 N GLU B 150 O ILE B 200 SHEET 13 B13 LEU B 161 LEU B 171 -1 O LYS B 162 N ILE B 153 LINK C PHE A 65 N NYG A 66 1555 1555 1.33 LINK C NYG A 66 N ASN A 69 1555 1555 1.33 LINK C PHE B 65 N NYG B 66 1555 1555 1.33 LINK C NYG B 66 N ASN B 69 1555 1555 1.34 CISPEP 1 GLY A 52 PRO A 53 0 -4.43 CISPEP 2 CYS A 87 PRO A 88 0 4.36 CISPEP 3 GLY B 52 PRO B 53 0 -1.98 CISPEP 4 CYS B 87 PRO B 88 0 3.53 CRYST1 102.536 102.536 270.909 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009753 0.005631 0.000000 0.00000 SCALE2 0.000000 0.011261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003691 0.00000 MASTER 384 0 2 7 26 0 0 6 0 0 0 36 END