HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-DEC-06 2OD0 TITLE THE CRYSTAL STRUCTURE OF GENE PRODUCT VP1028 FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN VP1028; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-105; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VP1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, VIBRIO PARAHAEMOLYTICUS, UNKNOWN FUNCTION, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2OD0 1 VERSN REVDAT 2 24-FEB-09 2OD0 1 VERSN REVDAT 1 23-JAN-07 2OD0 0 JRNL AUTH R.ZHANG,M.ZHOU,S.MOY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF GENE PRODUCT VP1028 FROM VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1435 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1708 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1183 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2297 ; 1.380 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2887 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 5.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;38.826 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;14.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 8.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 246 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1813 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 345 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 348 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1205 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 825 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 884 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.128 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.322 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1259 ; 1.370 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 414 ; 0.225 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1634 ; 1.546 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 794 ; 2.738 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 663 ; 3.664 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 40 REMARK 3 RESIDUE RANGE : A 41 A 70 REMARK 3 RESIDUE RANGE : A 71 A 105 REMARK 3 RESIDUE RANGE : B 3 B 40 REMARK 3 RESIDUE RANGE : B 41 B 70 REMARK 3 RESIDUE RANGE : B 71 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7170 -6.1910 19.8220 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: -0.0114 REMARK 3 T33: -0.1265 T12: 0.0323 REMARK 3 T13: -0.0031 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4149 L22: 0.4700 REMARK 3 L33: 2.9391 L12: 0.0791 REMARK 3 L13: 0.3251 L23: 0.6724 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.0554 S13: -0.0276 REMARK 3 S21: 0.0555 S22: 0.0373 S23: -0.0464 REMARK 3 S31: 0.0528 S32: 0.0507 S33: -0.0862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB040980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 79.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M CITRATE REMARK 280 BUFFER, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.22900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.43800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.22900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.43800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED MOLA AND MOLB REMARK 300 REPRESENT THE DIMER IN THE ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 56 OH TYR A 67 4445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 33.21 -85.57 REMARK 500 SER A 88 68.67 -115.26 REMARK 500 ASP B 33 55.00 36.38 REMARK 500 SER B 88 79.54 -119.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85958.2 RELATED DB: TARGETDB DBREF 2OD0 A 1 105 UNP Q87QX1 Q87QX1_VIBPA 1 105 DBREF 2OD0 B 1 105 UNP Q87QX1 Q87QX1_VIBPA 1 105 SEQADV 2OD0 MSE A 1 UNP Q87QX1 MET 1 MODIFIED RESIDUE SEQADV 2OD0 MSE A 10 UNP Q87QX1 MET 10 MODIFIED RESIDUE SEQADV 2OD0 MSE A 24 UNP Q87QX1 MET 24 MODIFIED RESIDUE SEQADV 2OD0 MSE A 36 UNP Q87QX1 MET 36 MODIFIED RESIDUE SEQADV 2OD0 MSE B 1 UNP Q87QX1 MET 1 MODIFIED RESIDUE SEQADV 2OD0 MSE B 10 UNP Q87QX1 MET 10 MODIFIED RESIDUE SEQADV 2OD0 MSE B 24 UNP Q87QX1 MET 24 MODIFIED RESIDUE SEQADV 2OD0 MSE B 36 UNP Q87QX1 MET 36 MODIFIED RESIDUE SEQRES 1 A 105 MSE ASP LYS PRO ILE LEU LYS ASP SER MSE LYS LEU PHE SEQRES 2 A 105 GLU ALA LEU GLY THR ILE LYS SER ARG SER MSE PHE GLY SEQRES 3 A 105 GLY PHE GLY LEU PHE ALA ASP GLU THR MSE PHE ALA LEU SEQRES 4 A 105 VAL VAL ASN ASN GLN LEU HIS ILE ARG ALA ASP GLN GLN SEQRES 5 A 105 THR SER SER ASP PHE GLU THR GLN GLY LEU LYS PRO TYR SEQRES 6 A 105 VAL TYR LYS LYS ARG GLY PHE PRO VAL VAL THR LYS TYR SEQRES 7 A 105 TYR ALA ILE SER SER GLU LEU TRP GLU SER SER ASP ARG SEQRES 8 A 105 LEU ILE GLU VAL ALA LYS LYS SER LEU GLU ASN ALA LYS SEQRES 9 A 105 LEU SEQRES 1 B 105 MSE ASP LYS PRO ILE LEU LYS ASP SER MSE LYS LEU PHE SEQRES 2 B 105 GLU ALA LEU GLY THR ILE LYS SER ARG SER MSE PHE GLY SEQRES 3 B 105 GLY PHE GLY LEU PHE ALA ASP GLU THR MSE PHE ALA LEU SEQRES 4 B 105 VAL VAL ASN ASN GLN LEU HIS ILE ARG ALA ASP GLN GLN SEQRES 5 B 105 THR SER SER ASP PHE GLU THR GLN GLY LEU LYS PRO TYR SEQRES 6 B 105 VAL TYR LYS LYS ARG GLY PHE PRO VAL VAL THR LYS TYR SEQRES 7 B 105 TYR ALA ILE SER SER GLU LEU TRP GLU SER SER ASP ARG SEQRES 8 B 105 LEU ILE GLU VAL ALA LYS LYS SER LEU GLU ASN ALA LYS SEQRES 9 B 105 LEU MODRES 2OD0 MSE A 10 MET SELENOMETHIONINE MODRES 2OD0 MSE A 24 MET SELENOMETHIONINE MODRES 2OD0 MSE A 36 MET SELENOMETHIONINE MODRES 2OD0 MSE B 10 MET SELENOMETHIONINE MODRES 2OD0 MSE B 24 MET SELENOMETHIONINE MODRES 2OD0 MSE B 36 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 24 8 HET MSE A 36 8 HET MSE B 10 8 HET MSE B 24 8 HET MSE B 36 8 HET MG B 301 1 HET MG A 302 1 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HET SO4 A 409 5 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 HOH *208(H2 O) HELIX 1 1 PRO A 4 GLU A 14 1 11 HELIX 2 2 ALA A 15 GLY A 17 5 3 HELIX 3 3 ASP A 50 GLN A 60 1 11 HELIX 4 4 SER A 82 SER A 88 1 7 HELIX 5 5 SER A 88 LEU A 105 1 18 HELIX 6 6 PRO B 4 PHE B 13 1 10 HELIX 7 7 GLU B 14 GLY B 17 5 4 HELIX 8 8 ASP B 50 GLN B 60 1 11 HELIX 9 9 SER B 82 GLU B 87 1 6 HELIX 10 10 SER B 88 LYS B 104 1 17 SHEET 1 A10 TYR A 78 ALA A 80 0 SHEET 2 A10 GLN A 44 ARG A 48 -1 N ILE A 47 O TYR A 79 SHEET 3 A10 THR A 35 VAL A 41 -1 N LEU A 39 O HIS A 46 SHEET 4 A10 GLY A 27 ALA A 32 -1 N LEU A 30 O ALA A 38 SHEET 5 A10 LYS A 20 MSE A 24 -1 N LYS A 20 O PHE A 31 SHEET 6 A10 ILE B 19 MSE B 24 -1 O SER B 21 N SER A 21 SHEET 7 A10 GLY B 27 ALA B 32 -1 O PHE B 31 N LYS B 20 SHEET 8 A10 THR B 35 VAL B 41 -1 O VAL B 40 N PHE B 28 SHEET 9 A10 GLN B 44 ARG B 48 -1 O HIS B 46 N LEU B 39 SHEET 10 A10 TYR B 78 ALA B 80 -1 O TYR B 79 N ILE B 47 SHEET 1 B 2 VAL A 66 LYS A 69 0 SHEET 2 B 2 PHE A 72 VAL A 75 -1 O VAL A 74 N TYR A 67 SHEET 1 C 2 VAL B 66 LYS B 69 0 SHEET 2 C 2 PHE B 72 VAL B 75 -1 O VAL B 74 N TYR B 67 LINK C SER A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N LYS A 11 1555 1555 1.33 LINK C SER A 23 N MSE A 24 1555 1555 1.34 LINK C MSE A 24 N PHE A 25 1555 1555 1.35 LINK C THR A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N PHE A 37 1555 1555 1.32 LINK MG MG A 302 NE2 GLN A 51 1555 1555 1.90 LINK C SER B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N LYS B 11 1555 1555 1.34 LINK C SER B 23 N MSE B 24 1555 1555 1.32 LINK C MSE B 24 N PHE B 25 1555 1555 1.33 LINK C THR B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N PHE B 37 1555 1555 1.32 LINK MG MG B 301 O HOH A 414 1555 1555 3.04 SITE 1 AC1 4 LYS A 7 HOH A 414 PRO B 4 LYS B 7 SITE 1 AC2 2 ARG A 48 GLN A 51 SITE 1 AC3 7 ASN B 42 GLN B 44 HIS B 46 TYR B 65 SITE 2 AC3 7 HOH B 409 HOH B 420 HOH B 488 SITE 1 AC4 3 ARG B 48 ASP B 50 GLN B 51 SITE 1 AC5 2 LYS B 69 ARG B 70 SITE 1 AC6 4 LYS A 68 LYS A 69 ARG A 70 HOH A 499 SITE 1 AC7 6 HIS A 46 TYR A 65 HOH A 411 HOH A 425 SITE 2 AC7 6 HOH A 473 HOH A 513 SITE 1 AC8 5 GLY A 17 THR A 18 THR B 59 HOH B 449 SITE 2 AC8 5 HOH B 492 SITE 1 AC9 4 LYS B 68 GLY B 71 LYS B 98 HOH B 441 SITE 1 BC1 5 ARG B 48 LYS B 77 TYR B 78 HOH B 416 SITE 2 BC1 5 HOH B 422 SITE 1 BC2 7 LYS A 7 LYS A 11 HOH A 410 HOH A 445 SITE 2 BC2 7 VAL B 41 ASN B 42 ASN B 43 CRYST1 42.458 42.876 157.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006333 0.00000 MASTER 359 0 17 10 14 0 16 6 0 0 0 18 END