HEADER TRANSFERASE 18-DEC-06 2OB1 TITLE PPM1 WITH 1,8-ANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE CARBOXYL METHYLTRANSFERASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PROTEIN PHOSPHATASE METHYLTRANSFERASE 1; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PPM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS PPM1 IN THE PRESENCE OF 1,8-ANS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.GROVES REVDAT 3 24-FEB-09 2OB1 1 VERSN REVDAT 2 22-MAY-07 2OB1 1 JRNL REVDAT 1 30-JAN-07 2OB1 0 JRNL AUTH M.R.GROVES,I.B.MULLER,X.KREPLIN,J.MULLER-DIECKMANN JRNL TITL A METHOD FOR THE GENERAL IDENTIFICATION OF PROTEIN JRNL TITL 2 CRYSTALS IN CRYSTALLIZATION EXPERIMENTS USING A JRNL TITL 3 NONCOVALENT FLUORESCENT DYE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 526 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17372358 JRNL DOI 10.1107/S0907444906056137 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 88060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 325 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 913 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8044 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10920 ; 1.524 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1015 ; 5.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 349 ;33.399 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1522 ;14.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;16.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1236 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5964 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4662 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5708 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 995 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5057 ; 1.009 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7995 ; 1.619 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3411 ; 2.534 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2905 ; 3.871 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 10 B 328 6 REMARK 3 1 A 10 A 328 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 B (A): 2520 ; 0.380 ; 5.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 2520 ; 2.140 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 10 C 328 6 REMARK 3 1 A 10 A 328 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 C (A): 2536 ; 0.390 ; 5.000 REMARK 3 LOOSE THERMAL 2 C (A**2): 2536 ; 4.950 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2OB1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB040910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : SI(111) MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 83.045 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1RJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 0.2M AMMONIUM REMARK 280 SULFATE, 0.1M MES, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.96000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.98000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.97000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.99000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER IS BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2352 O HOH A 2353 1.98 REMARK 500 O HOH A 2357 O HOH A 2362 2.01 REMARK 500 O PRO B 161 O HOH B 2297 2.04 REMARK 500 CG2 VAL C 73 O HOH C 2198 2.05 REMARK 500 O HOH A 2127 O HOH A 2348 2.07 REMARK 500 OG SER A 149 O HOH A 2320 2.08 REMARK 500 OG SER C 149 O HOH C 2185 2.08 REMARK 500 O HOH B 2272 O HOH B 2302 2.09 REMARK 500 OD2 ASP B 241 O HOH B 2154 2.10 REMARK 500 OH TYR B 76 O HOH B 2294 2.10 REMARK 500 O HOH A 2051 O HOH A 2121 2.11 REMARK 500 OG SER B 221 O HOH B 2087 2.12 REMARK 500 O HOH A 2091 O HOH A 2204 2.13 REMARK 500 O HOH B 2170 O HOH B 2314 2.15 REMARK 500 O HOH B 2232 O HOH B 2278 2.17 REMARK 500 O HOH B 2172 O HOH B 2289 2.18 REMARK 500 O HOH A 2067 O HOH A 2354 2.18 REMARK 500 O GLY A 105 O HOH A 2112 2.18 REMARK 500 O HOH A 2125 O HOH A 2208 2.19 REMARK 500 O HOH A 2051 O HOH A 2310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2280 O HOH B 2065 3565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 179 CG1 - CB - CG2 ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 156 53.57 -65.70 REMARK 500 THR A 157 -53.82 -25.19 REMARK 500 TYR A 265 70.91 -105.82 REMARK 500 SER B 69 31.75 -98.60 REMARK 500 ASP B 156 103.16 -38.84 REMARK 500 ASN B 240 40.75 37.57 REMARK 500 TYR B 265 74.65 -105.07 REMARK 500 GLN B 306 106.82 -163.22 REMARK 500 GLU B 310 71.26 -117.86 REMARK 500 SER C 34 171.04 -52.20 REMARK 500 SER C 160 145.15 -38.57 REMARK 500 ASN C 240 -11.61 92.06 REMARK 500 SER C 254 -45.79 59.06 REMARK 500 ASN C 256 64.55 20.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2003 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 2004 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OB2 RELATED DB: PDB REMARK 900 PPM1 IN THE ABSENCE OF 1,8-ANS (CF 1JD) DBREF 2OB1 A 10 328 UNP Q04081 LCMT1_YEAST 10 328 DBREF 2OB1 B 10 328 UNP Q04081 LCMT1_YEAST 10 328 DBREF 2OB1 C 10 328 UNP Q04081 LCMT1_YEAST 10 328 SEQRES 1 A 319 TYR ASP ALA LEU SER CYS LYS LEU ALA ALA ILE SER VAL SEQRES 2 A 319 GLY TYR LEU PRO SER SER GLY LEU GLN ARG LEU SER VAL SEQRES 3 A 319 ASP LEU SER LYS LYS TYR THR GLU TRP HIS ARG SER TYR SEQRES 4 A 319 LEU ILE THR LEU LYS LYS PHE SER ARG ARG ALA PHE GLY SEQRES 5 A 319 LYS VAL ASP LYS ALA MET ARG SER SER PHE PRO VAL MET SEQRES 6 A 319 ASN TYR GLY THR TYR LEU ARG THR VAL GLY ILE ASP ALA SEQRES 7 A 319 ALA ILE LEU GLU PHE LEU VAL ALA ASN GLU LYS VAL GLN SEQRES 8 A 319 VAL VAL ASN LEU GLY CYS GLY SER ASP LEU ARG MET LEU SEQRES 9 A 319 PRO LEU LEU GLN MET PHE PRO HIS LEU ALA TYR VAL ASP SEQRES 10 A 319 ILE ASP TYR ASN GLU SER VAL GLU LEU LYS ASN SER ILE SEQRES 11 A 319 LEU ARG GLU SER GLU ILE LEU ARG ILE SER LEU GLY LEU SEQRES 12 A 319 SER LYS GLU ASP THR ALA LYS SER PRO PHE LEU ILE ASP SEQRES 13 A 319 GLN GLY ARG TYR LYS LEU ALA ALA CYS ASP LEU ASN ASP SEQRES 14 A 319 ILE THR GLU THR THR ARG LEU LEU ASP VAL CYS THR LYS SEQRES 15 A 319 ARG GLU ILE PRO THR ILE VAL ILE SER GLU CYS LEU LEU SEQRES 16 A 319 CYS TYR MET HIS ASN ASN GLU SER GLN LEU LEU ILE ASN SEQRES 17 A 319 THR ILE MET SER LYS PHE SER HIS GLY LEU TRP ILE SER SEQRES 18 A 319 TYR ASP PRO ILE GLY GLY SER GLN PRO ASN ASP ARG PHE SEQRES 19 A 319 GLY ALA ILE MET GLN SER ASN LEU LYS GLU SER ARG ASN SEQRES 20 A 319 LEU GLU MET PRO THR LEU MET THR TYR ASN SER LYS GLU SEQRES 21 A 319 LYS TYR ALA SER ARG TRP SER ALA ALA PRO ASN VAL ILE SEQRES 22 A 319 VAL ASN ASP MET TRP GLU ILE PHE ASN ALA GLN ILE PRO SEQRES 23 A 319 GLU SER GLU ARG LYS ARG LEU ARG SER LEU GLN PHE LEU SEQRES 24 A 319 ASP GLU LEU GLU GLU LEU LYS VAL MET GLN THR HIS TYR SEQRES 25 A 319 ILE LEU MET LYS ALA GLN TRP SEQRES 1 B 319 TYR ASP ALA LEU SER CYS LYS LEU ALA ALA ILE SER VAL SEQRES 2 B 319 GLY TYR LEU PRO SER SER GLY LEU GLN ARG LEU SER VAL SEQRES 3 B 319 ASP LEU SER LYS LYS TYR THR GLU TRP HIS ARG SER TYR SEQRES 4 B 319 LEU ILE THR LEU LYS LYS PHE SER ARG ARG ALA PHE GLY SEQRES 5 B 319 LYS VAL ASP LYS ALA MET ARG SER SER PHE PRO VAL MET SEQRES 6 B 319 ASN TYR GLY THR TYR LEU ARG THR VAL GLY ILE ASP ALA SEQRES 7 B 319 ALA ILE LEU GLU PHE LEU VAL ALA ASN GLU LYS VAL GLN SEQRES 8 B 319 VAL VAL ASN LEU GLY CYS GLY SER ASP LEU ARG MET LEU SEQRES 9 B 319 PRO LEU LEU GLN MET PHE PRO HIS LEU ALA TYR VAL ASP SEQRES 10 B 319 ILE ASP TYR ASN GLU SER VAL GLU LEU LYS ASN SER ILE SEQRES 11 B 319 LEU ARG GLU SER GLU ILE LEU ARG ILE SER LEU GLY LEU SEQRES 12 B 319 SER LYS GLU ASP THR ALA LYS SER PRO PHE LEU ILE ASP SEQRES 13 B 319 GLN GLY ARG TYR LYS LEU ALA ALA CYS ASP LEU ASN ASP SEQRES 14 B 319 ILE THR GLU THR THR ARG LEU LEU ASP VAL CYS THR LYS SEQRES 15 B 319 ARG GLU ILE PRO THR ILE VAL ILE SER GLU CYS LEU LEU SEQRES 16 B 319 CYS TYR MET HIS ASN ASN GLU SER GLN LEU LEU ILE ASN SEQRES 17 B 319 THR ILE MET SER LYS PHE SER HIS GLY LEU TRP ILE SER SEQRES 18 B 319 TYR ASP PRO ILE GLY GLY SER GLN PRO ASN ASP ARG PHE SEQRES 19 B 319 GLY ALA ILE MET GLN SER ASN LEU LYS GLU SER ARG ASN SEQRES 20 B 319 LEU GLU MET PRO THR LEU MET THR TYR ASN SER LYS GLU SEQRES 21 B 319 LYS TYR ALA SER ARG TRP SER ALA ALA PRO ASN VAL ILE SEQRES 22 B 319 VAL ASN ASP MET TRP GLU ILE PHE ASN ALA GLN ILE PRO SEQRES 23 B 319 GLU SER GLU ARG LYS ARG LEU ARG SER LEU GLN PHE LEU SEQRES 24 B 319 ASP GLU LEU GLU GLU LEU LYS VAL MET GLN THR HIS TYR SEQRES 25 B 319 ILE LEU MET LYS ALA GLN TRP SEQRES 1 C 319 TYR ASP ALA LEU SER CYS LYS LEU ALA ALA ILE SER VAL SEQRES 2 C 319 GLY TYR LEU PRO SER SER GLY LEU GLN ARG LEU SER VAL SEQRES 3 C 319 ASP LEU SER LYS LYS TYR THR GLU TRP HIS ARG SER TYR SEQRES 4 C 319 LEU ILE THR LEU LYS LYS PHE SER ARG ARG ALA PHE GLY SEQRES 5 C 319 LYS VAL ASP LYS ALA MET ARG SER SER PHE PRO VAL MET SEQRES 6 C 319 ASN TYR GLY THR TYR LEU ARG THR VAL GLY ILE ASP ALA SEQRES 7 C 319 ALA ILE LEU GLU PHE LEU VAL ALA ASN GLU LYS VAL GLN SEQRES 8 C 319 VAL VAL ASN LEU GLY CYS GLY SER ASP LEU ARG MET LEU SEQRES 9 C 319 PRO LEU LEU GLN MET PHE PRO HIS LEU ALA TYR VAL ASP SEQRES 10 C 319 ILE ASP TYR ASN GLU SER VAL GLU LEU LYS ASN SER ILE SEQRES 11 C 319 LEU ARG GLU SER GLU ILE LEU ARG ILE SER LEU GLY LEU SEQRES 12 C 319 SER LYS GLU ASP THR ALA LYS SER PRO PHE LEU ILE ASP SEQRES 13 C 319 GLN GLY ARG TYR LYS LEU ALA ALA CYS ASP LEU ASN ASP SEQRES 14 C 319 ILE THR GLU THR THR ARG LEU LEU ASP VAL CYS THR LYS SEQRES 15 C 319 ARG GLU ILE PRO THR ILE VAL ILE SER GLU CYS LEU LEU SEQRES 16 C 319 CYS TYR MET HIS ASN ASN GLU SER GLN LEU LEU ILE ASN SEQRES 17 C 319 THR ILE MET SER LYS PHE SER HIS GLY LEU TRP ILE SER SEQRES 18 C 319 TYR ASP PRO ILE GLY GLY SER GLN PRO ASN ASP ARG PHE SEQRES 19 C 319 GLY ALA ILE MET GLN SER ASN LEU LYS GLU SER ARG ASN SEQRES 20 C 319 LEU GLU MET PRO THR LEU MET THR TYR ASN SER LYS GLU SEQRES 21 C 319 LYS TYR ALA SER ARG TRP SER ALA ALA PRO ASN VAL ILE SEQRES 22 C 319 VAL ASN ASP MET TRP GLU ILE PHE ASN ALA GLN ILE PRO SEQRES 23 C 319 GLU SER GLU ARG LYS ARG LEU ARG SER LEU GLN PHE LEU SEQRES 24 C 319 ASP GLU LEU GLU GLU LEU LYS VAL MET GLN THR HIS TYR SEQRES 25 C 319 ILE LEU MET LYS ALA GLN TRP HET PO4 B2003 5 HET PO4 C2004 5 HET PO4 A2001 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *913(H2 O) HELIX 1 1 TYR A 10 GLY A 23 1 14 HELIX 2 2 SER A 34 SER A 56 1 23 HELIX 3 3 SER A 56 SER A 69 1 14 HELIX 4 4 PHE A 71 ASN A 96 1 26 HELIX 5 5 ARG A 111 PHE A 119 1 9 HELIX 6 6 TYR A 129 SER A 143 1 15 HELIX 7 7 SER A 143 GLY A 151 1 9 HELIX 8 8 ASP A 178 THR A 190 1 13 HELIX 9 9 LEU A 203 MET A 207 5 5 HELIX 10 10 HIS A 208 PHE A 223 1 16 HELIX 11 11 ARG A 242 ARG A 255 1 14 HELIX 12 12 SER A 267 SER A 273 1 7 HELIX 13 13 ARG A 274 SER A 276 5 3 HELIX 14 14 MET A 286 GLN A 293 1 8 HELIX 15 15 PRO A 295 GLN A 306 1 12 HELIX 16 16 GLU A 310 THR A 319 1 10 HELIX 17 17 TYR B 10 VAL B 22 1 13 HELIX 18 18 SER B 34 SER B 56 1 23 HELIX 19 19 SER B 56 SER B 69 1 14 HELIX 20 20 PHE B 71 ASN B 96 1 26 HELIX 21 21 ARG B 111 PHE B 119 1 9 HELIX 22 22 TYR B 129 SER B 143 1 15 HELIX 23 23 SER B 143 LEU B 150 1 8 HELIX 24 24 ASP B 178 THR B 190 1 13 HELIX 25 25 LEU B 203 MET B 207 5 5 HELIX 26 26 HIS B 208 SER B 221 1 14 HELIX 27 27 ARG B 242 ARG B 255 1 14 HELIX 28 28 SER B 267 SER B 273 1 7 HELIX 29 29 ARG B 274 SER B 276 5 3 HELIX 30 30 MET B 286 ILE B 294 1 9 HELIX 31 31 PRO B 295 GLN B 306 1 12 HELIX 32 32 GLU B 310 THR B 319 1 10 HELIX 33 33 TYR C 10 GLY C 23 1 14 HELIX 34 34 SER C 34 SER C 56 1 23 HELIX 35 35 SER C 56 SER C 69 1 14 HELIX 36 36 PHE C 71 ASN C 96 1 26 HELIX 37 37 ARG C 111 PHE C 119 1 9 HELIX 38 38 TYR C 129 SER C 143 1 15 HELIX 39 39 SER C 143 GLY C 151 1 9 HELIX 40 40 ASP C 178 VAL C 188 1 11 HELIX 41 41 LEU C 203 MET C 207 5 5 HELIX 42 42 HIS C 208 SER C 221 1 14 HELIX 43 43 ARG C 242 GLU C 253 1 12 HELIX 44 44 SER C 267 ARG C 274 1 8 HELIX 45 45 MET C 286 GLN C 293 1 8 HELIX 46 46 PRO C 295 GLN C 306 1 12 HELIX 47 47 GLU C 310 THR C 319 1 10 SHEET 1 A 8 PHE A 162 GLN A 166 0 SHEET 2 A 8 TYR A 169 ALA A 173 -1 O LEU A 171 N LEU A 163 SHEET 3 A 8 LEU A 122 ASP A 128 1 N ASP A 126 O LYS A 170 SHEET 4 A 8 VAL A 99 LEU A 104 1 N ASN A 103 O VAL A 125 SHEET 5 A 8 THR A 196 GLU A 201 1 O ILE A 197 N VAL A 102 SHEET 6 A 8 GLY A 226 PRO A 233 1 O ILE A 229 N VAL A 198 SHEET 7 A 8 TYR A 321 TRP A 328 -1 O ALA A 326 N TRP A 228 SHEET 8 A 8 ASN A 280 ASP A 285 -1 N ASN A 280 O GLN A 327 SHEET 1 B 8 PHE B 162 GLN B 166 0 SHEET 2 B 8 TYR B 169 ALA B 173 -1 O LEU B 171 N LEU B 163 SHEET 3 B 8 LEU B 122 ASP B 128 1 N ASP B 126 O LYS B 170 SHEET 4 B 8 VAL B 99 LEU B 104 1 N ASN B 103 O VAL B 125 SHEET 5 B 8 THR B 196 GLU B 201 1 O ILE B 199 N VAL B 102 SHEET 6 B 8 GLY B 226 PRO B 233 1 O ILE B 229 N VAL B 198 SHEET 7 B 8 TYR B 321 TRP B 328 -1 O ALA B 326 N TRP B 228 SHEET 8 B 8 ASN B 280 ASP B 285 -1 N ASN B 280 O GLN B 327 SHEET 1 C 8 PHE C 162 GLN C 166 0 SHEET 2 C 8 TYR C 169 ALA C 173 -1 O LEU C 171 N LEU C 163 SHEET 3 C 8 LEU C 122 ASP C 128 1 N ASP C 126 O LYS C 170 SHEET 4 C 8 VAL C 99 LEU C 104 1 N ASN C 103 O VAL C 125 SHEET 5 C 8 THR C 196 GLU C 201 1 O ILE C 197 N VAL C 102 SHEET 6 C 8 GLY C 226 PRO C 233 1 O ILE C 229 N VAL C 198 SHEET 7 C 8 TYR C 321 TRP C 328 -1 O ALA C 326 N TRP C 228 SHEET 8 C 8 ASN C 280 ASP C 285 -1 N ASN C 280 O GLN C 327 CISPEP 1 LEU A 25 PRO A 26 0 0.61 CISPEP 2 SER A 160 PRO A 161 0 12.16 CISPEP 3 LEU B 25 PRO B 26 0 -2.84 CISPEP 4 SER B 160 PRO B 161 0 8.34 CISPEP 5 LEU C 25 PRO C 26 0 -0.33 CISPEP 6 SER C 160 PRO C 161 0 2.59 SITE 1 AC1 9 LYS B 16 TYR B 41 HIS B 45 THR B 82 SITE 2 AC1 9 ASP B 109 LEU B 110 ARG B 111 HOH B2064 SITE 3 AC1 9 HOH B2107 SITE 1 AC2 8 LYS C 16 TYR C 41 HIS C 45 ASP C 109 SITE 2 AC2 8 LEU C 110 ARG C 111 HOH C2047 HOH C2051 SITE 1 AC3 9 LYS A 16 TYR A 41 HIS A 45 ASP A 109 SITE 2 AC3 9 LEU A 110 ARG A 111 HOH A2042 HOH A2071 SITE 3 AC3 9 HOH A2352 CRYST1 110.620 110.620 161.940 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009040 0.005219 0.000000 0.00000 SCALE2 0.000000 0.010438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006175 0.00000 MASTER 386 0 3 47 24 0 8 6 0 0 0 75 END