HEADER SIGNALING PROTEIN 12-DEC-06 2O88 TITLE CRYSTAL STRUCTURE OF THE N114A MUTANT OF ABL-SH3 DOMAIN COMPLEXED WITH TITLE 2 A DESIGNED HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR SH3-LIGAND TITLE 3 INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 64-121; COMPND 5 SYNONYM: P150, C- ABL, ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG COMPND 6 1; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: P41 PEPTIDE; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: PBAT4; SOURCE 6 GENE: ABL1, ABL, JTK7; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS SH3 DOMAIN HIGH AFFINITY PEPTIDE COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 5 20-OCT-21 2O88 1 SOURCE REMARK SEQADV LINK REVDAT 4 18-OCT-17 2O88 1 REMARK REVDAT 3 13-JUL-11 2O88 1 VERSN REVDAT 2 24-FEB-09 2O88 1 VERSN REVDAT 1 01-MAY-07 2O88 0 JRNL AUTH A.CAMARA-ARTIGAS,A.PALENCIA,J.C.MARTINEZ,I.LUQUE,J.A.GAVIRA, JRNL AUTH 2 J.M.GARCIA-RUIZ JRNL TITL CRYSTALLIZATION BY CAPILLARY COUNTER-DIFFUSION AND STRUCTURE JRNL TITL 2 DETERMINATION OF THE N114A MUTANT OF THE SH3 DOMAIN OF ABL JRNL TITL 3 TYROSINE KINASE COMPLEXED WITH A HIGH-AFFINITY PEPTIDE JRNL TITL 4 LIGAND. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 646 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452790 JRNL DOI 10.1107/S0907444907011109 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 13178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 745 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1087 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1497 ; 1.744 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 5.543 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;33.415 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 144 ;14.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 858 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 359 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 728 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 38 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 701 ; 1.067 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1110 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 458 ; 2.361 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 385 ; 3.443 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 65 A 119 4 REMARK 3 1 B 65 B 119 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 428 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 428 ; 0.880 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 1 C 10 4 REMARK 3 1 D 1 D 10 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 C (A): 75 ; 0.090 ; 0.500 REMARK 3 MEDIUM THERMAL 2 C (A**2): 75 ; 0.490 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4397 -10.1287 13.5651 REMARK 3 T TENSOR REMARK 3 T11: -0.0901 T22: -0.1067 REMARK 3 T33: -0.2088 T12: 0.0117 REMARK 3 T13: 0.0185 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 10.5777 L22: 15.0570 REMARK 3 L33: 5.1912 L12: 5.4335 REMARK 3 L13: 0.5582 L23: 1.6293 REMARK 3 S TENSOR REMARK 3 S11: 0.2108 S12: -0.0537 S13: 0.2719 REMARK 3 S21: -0.1049 S22: 0.0164 S23: -0.1308 REMARK 3 S31: -0.1648 S32: 0.0708 S33: -0.2273 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2682 -14.3911 9.9087 REMARK 3 T TENSOR REMARK 3 T11: -0.0553 T22: -0.1371 REMARK 3 T33: -0.2044 T12: 0.0045 REMARK 3 T13: -0.0155 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 48.0224 L22: 6.9319 REMARK 3 L33: 2.2929 L12: 10.9001 REMARK 3 L13: -0.5203 L23: 0.4124 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: 0.0138 S13: -0.6152 REMARK 3 S21: -0.2062 S22: 0.1651 S23: -0.1188 REMARK 3 S31: 0.1754 S32: 0.0346 S33: -0.0472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1293 -2.6812 12.0597 REMARK 3 T TENSOR REMARK 3 T11: -0.0556 T22: -0.0889 REMARK 3 T33: 0.2230 T12: -0.0114 REMARK 3 T13: 0.0008 T23: 0.1056 REMARK 3 L TENSOR REMARK 3 L11: 35.5955 L22: 7.0815 REMARK 3 L33: 22.0563 L12: -1.1015 REMARK 3 L13: -22.6557 L23: 4.2454 REMARK 3 S TENSOR REMARK 3 S11: -0.5677 S12: 0.1463 S13: 1.6164 REMARK 3 S21: 0.0141 S22: 0.5235 S23: 1.0688 REMARK 3 S31: -0.0925 S32: 0.3751 S33: 0.0441 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5271 -9.6135 21.3094 REMARK 3 T TENSOR REMARK 3 T11: -0.0118 T22: -0.0573 REMARK 3 T33: -0.0345 T12: -0.0462 REMARK 3 T13: 0.0480 T23: -0.0926 REMARK 3 L TENSOR REMARK 3 L11: 25.3671 L22: 10.7681 REMARK 3 L33: 41.2818 L12: -2.9296 REMARK 3 L13: 6.0128 L23: 10.1890 REMARK 3 S TENSOR REMARK 3 S11: 0.4464 S12: -1.8503 S13: 0.9096 REMARK 3 S21: 1.1413 S22: -0.3908 S23: 0.8194 REMARK 3 S31: -0.1489 S32: -0.8227 S33: -0.0555 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9996 -7.1671 12.2045 REMARK 3 T TENSOR REMARK 3 T11: -0.0709 T22: -0.1046 REMARK 3 T33: -0.1119 T12: -0.0083 REMARK 3 T13: 0.0111 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 9.8850 L22: 4.0983 REMARK 3 L33: 3.8152 L12: 4.0115 REMARK 3 L13: 1.0048 L23: -0.5144 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.7569 S13: 0.6059 REMARK 3 S21: -0.1611 S22: 0.3381 S23: 0.0412 REMARK 3 S31: -0.3394 S32: 0.2520 S33: -0.2346 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6095 -3.5302 0.9099 REMARK 3 T TENSOR REMARK 3 T11: -0.0941 T22: -0.2160 REMARK 3 T33: -0.1377 T12: -0.0421 REMARK 3 T13: -0.0106 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 12.0372 L22: 4.8029 REMARK 3 L33: 7.1684 L12: -3.3993 REMARK 3 L13: -1.4402 L23: 1.7441 REMARK 3 S TENSOR REMARK 3 S11: 0.1846 S12: 0.0403 S13: 0.0348 REMARK 3 S21: 0.0249 S22: -0.2220 S23: -0.0663 REMARK 3 S31: 0.0141 S32: -0.0185 S33: 0.0374 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): -34.1139 -6.8420 2.5733 REMARK 3 T TENSOR REMARK 3 T11: -0.0532 T22: -0.0997 REMARK 3 T33: -0.0679 T12: -0.0486 REMARK 3 T13: -0.0053 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 26.8715 L22: 1.5272 REMARK 3 L33: 21.8163 L12: 3.9249 REMARK 3 L13: -5.3275 L23: -1.4058 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.2506 S13: -0.5805 REMARK 3 S21: 0.2184 S22: -0.3299 S23: 0.2437 REMARK 3 S31: 0.5753 S32: -0.7375 S33: 0.2882 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4538 -2.2689 10.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.0043 T22: -0.0930 REMARK 3 T33: -0.1136 T12: 0.0057 REMARK 3 T13: -0.0413 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 17.8597 L22: 14.5382 REMARK 3 L33: 4.7684 L12: 12.3674 REMARK 3 L13: -3.7376 L23: 1.8282 REMARK 3 S TENSOR REMARK 3 S11: -0.6034 S12: -0.2560 S13: 0.0842 REMARK 3 S21: 0.2484 S22: 0.2853 S23: 0.0928 REMARK 3 S31: -0.2949 S32: -0.1054 S33: 0.3181 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7512 4.9652 3.5082 REMARK 3 T TENSOR REMARK 3 T11: -0.0737 T22: -0.1112 REMARK 3 T33: -0.0602 T12: -0.0463 REMARK 3 T13: 0.0085 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 15.5422 L22: 24.1529 REMARK 3 L33: 10.4564 L12: -5.3586 REMARK 3 L13: 3.7590 L23: -0.2282 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.1782 S13: 1.2270 REMARK 3 S21: 0.1030 S22: -0.2405 S23: -0.0016 REMARK 3 S31: -0.6917 S32: 0.6493 S33: 0.1148 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0019 -3.7559 4.8880 REMARK 3 T TENSOR REMARK 3 T11: -0.0692 T22: -0.1536 REMARK 3 T33: -0.1833 T12: -0.0227 REMARK 3 T13: 0.0063 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 7.3843 L22: 6.3706 REMARK 3 L33: 3.6019 L12: -3.6985 REMARK 3 L13: 0.5729 L23: -2.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.2128 S13: -0.2745 REMARK 3 S21: 0.3101 S22: -0.1401 S23: 0.2659 REMARK 3 S31: 0.1505 S32: -0.0734 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6057 -17.4357 20.3005 REMARK 3 T TENSOR REMARK 3 T11: -0.0397 T22: -0.0989 REMARK 3 T33: -0.0641 T12: -0.0396 REMARK 3 T13: -0.0004 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 6.5322 L22: 10.9356 REMARK 3 L33: 12.0380 L12: -7.7112 REMARK 3 L13: 6.9732 L23: -8.6821 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: -0.0100 S13: 0.1985 REMARK 3 S21: 0.3946 S22: -0.3414 S23: -0.4638 REMARK 3 S31: -0.0291 S32: 0.7284 S33: 0.4920 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3061 4.5074 -4.7948 REMARK 3 T TENSOR REMARK 3 T11: -0.0110 T22: -0.0772 REMARK 3 T33: -0.1117 T12: -0.0081 REMARK 3 T13: 0.0222 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 15.6762 L22: 8.6992 REMARK 3 L33: 7.0921 L12: -4.2844 REMARK 3 L13: 0.6404 L23: -4.5179 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: 0.2346 S13: 0.0810 REMARK 3 S21: 0.2140 S22: 0.0660 S23: 0.4037 REMARK 3 S31: -0.2438 S32: -0.2469 S33: -0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000040810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : BRUKER MICROSTAR MICRO-FOCUS REMARK 200 (MONTEL OPTICS) REMARK 200 OPTICS : BRUKER MICROSTAR MICRO-FOCUS REMARK 200 (MONTEL OPTICS) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, SAINT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06820 REMARK 200 R SYM (I) : 0.04150 REMARK 200 FOR THE DATA SET : 16.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.79 REMARK 200 R MERGE FOR SHELL (I) : 0.24530 REMARK 200 R SYM FOR SHELL (I) : 0.21900 REMARK 200 FOR SHELL : 4.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUN SULPHATE, PH 7, CAPILLARY REMARK 280 COUNTER DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.08500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.21550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.04650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.21550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.08500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.04650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS FORMED BY THE SH3 DOMAIN (CHAIN REMARK 300 A/B) COMPLEXED WITH THE ACETYLATED PEPTIDE P41 (CHAIN C/D) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBZ RELATED DB: PDB REMARK 900 WT STRUCTURE DBREF 2O88 A 64 121 UNP P00519 ABL1_HUMAN 64 121 DBREF 2O88 B 64 121 UNP P00519 ABL1_HUMAN 64 121 DBREF 2O88 C 0 10 PDB 2O88 2O88 0 10 DBREF 2O88 D 0 10 PDB 2O88 2O88 0 10 SEQADV 2O88 ALA A 114 UNP P00519 ASN 114 ENGINEERED MUTATION SEQADV 2O88 ALA B 114 UNP P00519 ASN 114 ENGINEERED MUTATION SEQRES 1 A 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 A 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 A 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 A 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ALA TYR SEQRES 5 A 58 ILE THR PRO VAL ASN SER SEQRES 1 B 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 B 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 B 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 B 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ALA TYR SEQRES 5 B 58 ILE THR PRO VAL ASN SER SEQRES 1 C 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO SEQRES 1 D 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO HET ACE C 0 3 HET ACE D 0 3 HET SO4 A 122 5 HET SO4 B 122 5 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *67(H2 O) SHEET 1 A 5 GLY A 107 PRO A 112 0 SHEET 2 A 5 TRP A 99 THR A 104 -1 N CYS A 100 O VAL A 111 SHEET 3 A 5 LYS A 87 TYR A 93 -1 N LEU A 91 O GLU A 101 SHEET 4 A 5 LEU A 65 ALA A 68 -1 N PHE A 66 O LEU A 88 SHEET 5 A 5 ILE A 116 PRO A 118 -1 O THR A 117 N VAL A 67 SHEET 1 B 5 GLY B 107 PRO B 112 0 SHEET 2 B 5 TRP B 99 THR B 104 -1 N ALA B 102 O GLY B 109 SHEET 3 B 5 LYS B 87 TYR B 93 -1 N LEU B 91 O GLU B 101 SHEET 4 B 5 PHE B 66 ALA B 68 -1 N PHE B 66 O LEU B 88 SHEET 5 B 5 ILE B 116 PRO B 118 -1 O THR B 117 N VAL B 67 LINK C ACE C 0 N ALA C 1 1555 1555 1.33 LINK C ACE D 0 N ALA D 1 1555 1555 1.33 SITE 1 AC1 6 ARG A 89 ASN B 94 HIS B 95 HOH B 143 SITE 2 AC1 6 ACE D 0 ALA D 1 SITE 1 AC2 6 ASN A 94 HIS A 95 HOH A 133 ARG B 89 SITE 2 AC2 6 ACE C 0 ALA C 1 CRYST1 48.170 50.093 56.431 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017721 0.00000 MASTER 533 0 4 0 10 0 4 6 0 0 0 12 END