HEADER DNA 11-DEC-06 2O7X TITLE DUPLEX DNA CONTAINING AN ABASIC SITE WITH AN OPPOSITE G (BETA ANOMER) TITLE 2 IN 5'-G_AC-3' (10 STRUCTURE ENSEMBLE AND AVERAGED STRUCTURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*CP*CP*GP*GP*TP*GP*CP*TP*TP*TP*GP*G)-3'; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES KEYWDS DNA DAMAGE, APE1, ABASIC, AMBER, MOLECULAR DYNAMICS, DNA EXPDTA SOLUTION NMR NUMMDL 11 MDLTYP MINIMIZED AVERAGE AUTHOR J.CHEN,F.Y.DUPRADEAU,D.A.CASE,C.J.TURNER,J.STUBBE REVDAT 5 09-JUL-14 2O7X 1 HETATM VERSN REVDAT 4 15-SEP-09 2O7X 1 COMPND HET HETATM SEQRES REVDAT 3 24-FEB-09 2O7X 1 VERSN REVDAT 2 25-NOV-08 2O7X 1 JRNL REVDAT 1 27-NOV-07 2O7X 0 JRNL AUTH J.CHEN,F.Y.DUPRADEAU,D.A.CASE,C.J.TURNER,J.STUBBE JRNL TITL DNA OLIGONUCLEOTIDES WITH A, T, G OR C OPPOSITE AN ABASIC JRNL TITL 2 SITE: STRUCTURE AND DYNAMICS. JRNL REF NUCLEIC ACIDS RES. V. 36 253 2008 JRNL REFN ISSN 0305-1048 JRNL PMID 18025040 JRNL DOI 10.1093/NAR/GKM622 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : CASE ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HE STRUCTURES ARE BASED ON 455 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 58 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 2O7X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB040799. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 277 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE, 0.2 MM REMARK 210 EDTA; 10 MM SODIUM PHOSPHATE, 0.2 REMARK 210 MM EDTA REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2.7 MM DUPLEX DNA; 2.7 MM DUPLEX REMARK 210 DNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; E-COSY; H-P REMARK 210 HSQC; H3'-SELECTIVE HSQC; REMARK 210 WATERGATE-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 591 MHZ REMARK 210 SPECTROMETER MODEL : CUSTOM-BUILT REMARK 210 SPECTROMETER MANUFACTURER : CUSTOM-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2001, MARDIGRAS, AMBER 8.0 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS MATRIX RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 11 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND H-P HETERONUCLEAR EXPERIMENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-11 REMARK 470 RES CSSEQI ATOMS REMARK 470 AAB A 7 O2P REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DC A 1 C4 DC A 1 N4 -0.071 REMARK 500 1 DC A 1 C2 DC A 1 N3 0.052 REMARK 500 1 DC A 2 C5' DC A 2 C4' 0.048 REMARK 500 1 DC A 2 C4 DC A 2 N4 -0.076 REMARK 500 1 DA A 4 C5' DA A 4 C4' 0.077 REMARK 500 1 DA A 4 N3 DA A 4 C4 0.037 REMARK 500 1 DA A 4 C5 DA A 4 N7 0.072 REMARK 500 1 DA A 5 N3 DA A 5 C4 0.061 REMARK 500 1 DA A 5 C5 DA A 5 N7 0.065 REMARK 500 1 DA A 5 N9 DA A 5 C4 0.052 REMARK 500 1 DG A 6 C5' DG A 6 C4' 0.066 REMARK 500 1 DG A 6 O4' DG A 6 C4' -0.068 REMARK 500 1 DG A 6 N3 DG A 6 C4 0.078 REMARK 500 1 DA A 8 P DA A 8 O5' 0.068 REMARK 500 1 DA A 8 C5' DA A 8 C4' 0.045 REMARK 500 1 DA A 8 C4 DA A 8 C5 -0.045 REMARK 500 1 DA A 8 C5 DA A 8 N7 0.054 REMARK 500 1 DC A 10 C5' DC A 10 C4' 0.048 REMARK 500 1 DG A 11 C5 DG A 11 N7 0.063 REMARK 500 1 DG A 12 P DG A 12 O5' 0.088 REMARK 500 1 DG A 12 C5' DG A 12 C4' 0.048 REMARK 500 1 DG A 12 C8 DG A 12 N9 -0.062 REMARK 500 1 DG A 12 C2 DG A 12 N2 -0.060 REMARK 500 1 DG A 13 N7 DG A 13 C8 -0.065 REMARK 500 1 DC B 15 C4 DC B 15 N4 -0.059 REMARK 500 1 DC B 15 N1 DC B 15 C6 -0.038 REMARK 500 1 DC B 15 C4 DC B 15 C5 -0.050 REMARK 500 1 DC B 16 C5' DC B 16 C4' 0.059 REMARK 500 1 DC B 16 O4' DC B 16 C4' -0.079 REMARK 500 1 DC B 16 C2 DC B 16 O2 -0.058 REMARK 500 1 DG B 17 C5' DG B 17 C4' 0.045 REMARK 500 1 DG B 17 N3 DG B 17 C4 0.064 REMARK 500 1 DG B 17 C4 DG B 17 C5 -0.049 REMARK 500 1 DG B 17 C6 DG B 17 N1 0.043 REMARK 500 1 DG B 17 C2 DG B 17 N2 -0.087 REMARK 500 1 DG B 18 C5' DG B 18 C4' 0.084 REMARK 500 1 DG B 18 O4' DG B 18 C1' 0.067 REMARK 500 1 DG B 18 C6 DG B 18 N1 -0.058 REMARK 500 1 DG B 18 N7 DG B 18 C8 -0.037 REMARK 500 1 DT B 19 C5 DT B 19 C7 0.053 REMARK 500 1 DG B 20 C5' DG B 20 C4' 0.060 REMARK 500 1 DG B 20 N3 DG B 20 C4 0.050 REMARK 500 1 DG B 20 C5 DG B 20 C6 0.064 REMARK 500 1 DC B 21 C5' DC B 21 C4' 0.049 REMARK 500 1 DC B 21 C4 DC B 21 N4 -0.057 REMARK 500 1 DC B 21 C5 DC B 21 C6 0.073 REMARK 500 1 DT B 22 C5' DT B 22 C4' 0.066 REMARK 500 1 DT B 22 C5 DT B 22 C6 0.050 REMARK 500 1 DT B 22 C5 DT B 22 C7 0.044 REMARK 500 1 DT B 23 C2 DT B 23 N3 0.066 REMARK 500 REMARK 500 THIS ENTRY HAS 538 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DC A 1 C2 - N3 - C4 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DC A 1 N3 - C4 - C5 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 DC A 1 N1 - C2 - O2 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 DC A 1 N3 - C2 - O2 ANGL. DEV. = -6.9 DEGREES REMARK 500 1 DC A 2 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 1 DC A 2 N3 - C4 - C5 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DC A 2 C4 - C5 - C6 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DC A 2 N1 - C2 - O2 ANGL. DEV. = 7.9 DEGREES REMARK 500 1 DC A 2 N3 - C2 - O2 ANGL. DEV. = -8.0 DEGREES REMARK 500 1 DA A 3 O4' - C4' - C3' ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DA A 3 N1 - C2 - N3 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 DA A 3 C2 - N3 - C4 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DA A 4 O4' - C1' - N9 ANGL. DEV. = 8.4 DEGREES REMARK 500 1 DA A 4 N1 - C6 - N6 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 DA A 5 O4' - C4' - C3' ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DA A 5 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DA A 5 C6 - N1 - C2 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DA A 5 N1 - C2 - N3 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 DA A 5 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DA A 5 N1 - C6 - N6 ANGL. DEV. = -8.3 DEGREES REMARK 500 1 DA A 5 C5 - C6 - N6 ANGL. DEV. = 6.1 DEGREES REMARK 500 1 DG A 6 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 1 DG A 6 C3' - C2' - C1' ANGL. DEV. = -7.7 DEGREES REMARK 500 1 DG A 6 C5 - C6 - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DG A 6 C4 - C5 - N7 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DG A 6 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG A 6 C6 - C5 - N7 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DG A 6 N1 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DA A 8 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 1 DA A 8 O4' - C1' - C2' ANGL. DEV. = 10.7 DEGREES REMARK 500 1 DA A 8 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DA A 8 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DA A 8 N9 - C4 - C5 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA A 8 N1 - C6 - N6 ANGL. DEV. = -7.9 DEGREES REMARK 500 1 DA A 8 C5 - C6 - N6 ANGL. DEV. = 6.1 DEGREES REMARK 500 1 DC A 9 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DC A 9 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DC A 9 N3 - C4 - C5 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DC A 9 C4 - C5 - C6 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 DC A 9 N1 - C2 - O2 ANGL. DEV. = 10.2 DEGREES REMARK 500 1 DC A 9 N3 - C2 - O2 ANGL. DEV. = -11.1 DEGREES REMARK 500 1 DC A 9 C5 - C4 - N4 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DC A 10 O4' - C4' - C3' ANGL. DEV. = 7.4 DEGREES REMARK 500 1 DC A 10 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DC A 10 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 DC A 10 N1 - C2 - N3 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DC A 10 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DC A 10 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1346 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC A 1 0.09 SIDE CHAIN REMARK 500 1 DA A 3 0.08 SIDE CHAIN REMARK 500 1 DA A 4 0.13 SIDE CHAIN REMARK 500 1 DG A 6 0.07 SIDE CHAIN REMARK 500 1 DG A 11 0.09 SIDE CHAIN REMARK 500 1 DG A 13 0.09 SIDE CHAIN REMARK 500 1 DG B 17 0.15 SIDE CHAIN REMARK 500 1 DG B 18 0.08 SIDE CHAIN REMARK 500 1 DC B 21 0.10 SIDE CHAIN REMARK 500 1 DT B 22 0.13 SIDE CHAIN REMARK 500 1 DT B 23 0.09 SIDE CHAIN REMARK 500 1 DG B 26 0.09 SIDE CHAIN REMARK 500 2 DA A 3 0.08 SIDE CHAIN REMARK 500 2 DA A 5 0.08 SIDE CHAIN REMARK 500 2 DG A 6 0.08 SIDE CHAIN REMARK 500 2 DC A 9 0.10 SIDE CHAIN REMARK 500 2 DG A 11 0.09 SIDE CHAIN REMARK 500 2 DG A 12 0.07 SIDE CHAIN REMARK 500 2 DG A 13 0.07 SIDE CHAIN REMARK 500 2 DC B 14 0.11 SIDE CHAIN REMARK 500 2 DC B 15 0.06 SIDE CHAIN REMARK 500 2 DG B 17 0.10 SIDE CHAIN REMARK 500 2 DT B 19 0.09 SIDE CHAIN REMARK 500 2 DG B 20 0.06 SIDE CHAIN REMARK 500 2 DT B 22 0.10 SIDE CHAIN REMARK 500 2 DT B 23 0.11 SIDE CHAIN REMARK 500 2 DG B 25 0.06 SIDE CHAIN REMARK 500 3 DA A 4 0.08 SIDE CHAIN REMARK 500 3 DA A 8 0.11 SIDE CHAIN REMARK 500 3 DG A 11 0.07 SIDE CHAIN REMARK 500 3 DG A 12 0.06 SIDE CHAIN REMARK 500 3 DG A 13 0.12 SIDE CHAIN REMARK 500 3 DC B 14 0.09 SIDE CHAIN REMARK 500 3 DG B 17 0.11 SIDE CHAIN REMARK 500 3 DG B 20 0.09 SIDE CHAIN REMARK 500 3 DC B 21 0.10 SIDE CHAIN REMARK 500 3 DT B 22 0.08 SIDE CHAIN REMARK 500 3 DT B 24 0.08 SIDE CHAIN REMARK 500 3 DG B 25 0.10 SIDE CHAIN REMARK 500 3 DG B 26 0.13 SIDE CHAIN REMARK 500 4 DC A 1 0.10 SIDE CHAIN REMARK 500 4 DA A 4 0.07 SIDE CHAIN REMARK 500 4 DA A 5 0.06 SIDE CHAIN REMARK 500 4 DG A 6 0.11 SIDE CHAIN REMARK 500 4 DC A 9 0.10 SIDE CHAIN REMARK 500 4 DG A 11 0.11 SIDE CHAIN REMARK 500 4 DG A 12 0.09 SIDE CHAIN REMARK 500 4 DG A 13 0.08 SIDE CHAIN REMARK 500 4 DC B 14 0.06 SIDE CHAIN REMARK 500 4 DC B 16 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 135 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 5 DG B 18 -45.7 D D OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AAB A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HSL RELATED DB: NDB REMARK 900 ABASIC SITE-CONTAINING DNA IN THE SAME SEQUENCE CONTEXT REMARK 900 WITH AN OPPOSING DA REMARK 900 RELATED ID: 2HSR RELATED DB: NDB REMARK 900 ABASIC SITE-CONTAINING DNA IN THE SAME SEQUENCE CONTEXT REMARK 900 WITH AN OPPOSING DA REMARK 900 RELATED ID: 2O7W RELATED DB: NDB REMARK 900 SAME SEQUENCE, ALPHA ANOMER REMARK 900 RELATED ID: 2O7Y RELATED DB: NDB REMARK 900 RELATED ID: 2O7Z RELATED DB: NDB REMARK 900 RELATED ID: 2O80 RELATED DB: NDB REMARK 900 RELATED ID: 2O82 RELATED DB: NDB DBREF 2O7X A 1 13 PDB 2O7X 2O7X 1 13 DBREF 2O7X B 14 26 PDB 2O7X 2O7X 14 26 SEQRES 1 A 13 DC DC DA DA DA DG AAB DA DC DC DG DG DG SEQRES 1 B 13 DC DC DC DG DG DT DG DC DT DT DT DG DG HET AAB A 7 20 HETNAM AAB 2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE HETSYN AAB ABASIC DEOXYRIBOSE FORMUL 1 AAB C5 H11 O7 P LINK O3' DG A 6 P AAB A 7 1555 1555 1.64 LINK O3' AAB A 7 P DA A 8 1555 1555 1.66 SITE 1 AC1 4 DA A 5 DG A 6 DA A 8 DT B 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 325 0 1 0 0 0 1 6 0 0 0 2 END