HEADER METAL BINDING PROTEIN 17-NOV-06 2NXF TITLE CRYSTAL STRUCTURE OF A DIMETAL PHOSPHATASE FROM DANIO RERIO LOC 393393 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIMETAL PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: DR.12833, LOC 393393; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP 16K KEYWDS DINUCLEAR METAL CENTER PHOSPHATASE, METALLOPROTEIN, KEYWDS 2 METALLOPHOSPHOESTERASE, PROTEIN STRUCTURE INITIATIVE, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, CESG, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.BITTO,G.E.WESENBERG,G.N.PHILLIPS JR.,J.G.MCCOY,C.A.BINGMAN,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 4 18-OCT-17 2NXF 1 REMARK REVDAT 3 13-JUL-11 2NXF 1 VERSN REVDAT 2 24-FEB-09 2NXF 1 VERSN REVDAT 1 12-DEC-06 2NXF 0 JRNL AUTH E.BITTO,G.E.WESENBERG,G.N.PHILLIPS JR.,J.G.MCCOY,C.A.BINGMAN JRNL TITL CRYSTAL STRUCTURE OF A DIMETAL PHOSPHATASE FROM DANIO RERIO JRNL TITL 2 LOC 393393 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.013 REMARK 3 FREE R VALUE TEST SET COUNT : 2369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33800 REMARK 3 B22 (A**2) : 0.71100 REMARK 3 B33 (A**2) : -1.04800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3607 ; 1.241 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;36.837 ;23.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;11.915 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2099 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1267 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1828 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.028 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2582 ; 1.156 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 2.026 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1021 ; 3.138 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0078 17.1146 9.4275 REMARK 3 T TENSOR REMARK 3 T11: -0.1148 T22: -0.1757 REMARK 3 T33: -0.1356 T12: 0.0073 REMARK 3 T13: -0.0031 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.0926 L22: 0.8713 REMARK 3 L33: 2.6500 L12: -0.3570 REMARK 3 L13: 0.5280 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.1233 S13: -0.1338 REMARK 3 S21: -0.1113 S22: 0.0150 S23: 0.0840 REMARK 3 S31: 0.2324 S32: -0.0600 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1150 33.1898 21.0867 REMARK 3 T TENSOR REMARK 3 T11: -0.1422 T22: -0.1492 REMARK 3 T33: -0.1347 T12: 0.0331 REMARK 3 T13: -0.0008 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.1784 L22: 2.6716 REMARK 3 L33: 3.1026 L12: -1.2103 REMARK 3 L13: 0.3293 L23: -1.3235 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.0988 S13: 0.1575 REMARK 3 S21: -0.0108 S22: 0.0512 S23: 0.1526 REMARK 3 S31: -0.2337 S32: -0.1860 S33: -0.1120 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9925 25.8152 19.7243 REMARK 3 T TENSOR REMARK 3 T11: -0.1393 T22: -0.0862 REMARK 3 T33: -0.1305 T12: 0.0196 REMARK 3 T13: -0.0078 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.9147 L22: 0.6755 REMARK 3 L33: 2.7127 L12: -0.0949 REMARK 3 L13: -0.3089 L23: 0.2694 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0762 S13: 0.1133 REMARK 3 S21: 0.0013 S22: 0.0100 S23: -0.1646 REMARK 3 S31: -0.0717 S32: 0.4790 S33: -0.0183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923, 0.96400 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.276 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3480 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.077 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML PROTEIN, REMARK 280 0.050 M SODIUM CHLORIDE, 0.0031 M SODIUM AZIDE, 0.0003 M TCEP, REMARK 280 0.005 M BISTRIS PH 7.0) MIXED IN A 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION (10.4% PEG 4K, 0.40 M SODIUM CHLORIDE, 0.10 M HEPES PH REMARK 280 7.5) CRYOPROTECTED WITH: 15% PEG 8K, 0.30 M AMMONIUM THIOCYANATE, REMARK 280 0.010 M SODIUM DIHYDROGEN PHOSPHATE, 0.0005 M ZINC SULFATE, REMARK 280 0.10 M HEPPS PH 8.5 SUPPLEMENTED WITH UP TO 20% ETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.65750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.65750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.29200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.29650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.29200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.29650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.65750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.29200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.29650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.65750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.29200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.29650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 117 REMARK 465 THR A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 ASP A 121 REMARK 465 THR A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 574 O HOH A 618 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 74.94 -101.66 REMARK 500 GLU A 160 -11.37 82.34 REMARK 500 ASN A 244 47.67 -109.44 REMARK 500 HIS A 265 -53.99 76.85 REMARK 500 SER A 293 -162.01 -123.56 REMARK 500 ALA A 295 92.14 -160.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 15 OE1 REMARK 620 2 PO4 A 501 O3 85.7 REMARK 620 3 ASP A 60 OD2 96.3 96.5 REMARK 620 4 HIS A 267 NE2 95.8 86.6 167.6 REMARK 620 5 ASP A 13 OD1 104.7 169.6 83.2 91.5 REMARK 620 6 HOH A 844 O 165.6 81.0 80.0 88.8 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 96 OD1 REMARK 620 2 PO4 A 501 O4 82.3 REMARK 620 3 HIS A 228 NE2 93.5 175.2 REMARK 620 4 HOH A 844 O 149.3 67.0 117.2 REMARK 620 5 HIS A 265 ND1 96.1 93.8 88.9 85.6 REMARK 620 6 ASP A 60 OD2 100.3 89.4 89.1 80.8 163.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 694 O REMARK 620 2 HIS A 174 NE2 107.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 646 O REMARK 620 2 HIS A 166 NE2 144.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.70653 RELATED DB: TARGETDB DBREF 2NXF A 2 322 UNP Q7T291 Q7T291_BRARE 2 322 SEQADV 2NXF SER A 1 UNP Q7T291 CLONING ARTIFACT SEQADV 2NXF MSE A 80 UNP Q7T291 MET 80 MODIFIED RESIDUE SEQADV 2NXF MSE A 306 UNP Q7T291 MET 306 MODIFIED RESIDUE SEQADV 2NXF MSE A 308 UNP Q7T291 MET 308 MODIFIED RESIDUE SEQRES 1 A 322 SER GLU ASP PRO VAL PHE THR PHE GLY LEU ILE ALA ASP SEQRES 2 A 322 VAL GLN TYR ALA ASP ILE GLU ASP GLY GLU ASN TYR LEU SEQRES 3 A 322 ARG THR ARG ARG ARG TYR TYR ARG GLY SER ALA ASP LEU SEQRES 4 A 322 LEU ARG ASP ALA VAL LEU GLN TRP ARG ARG GLU ARG VAL SEQRES 5 A 322 GLN CYS VAL VAL GLN LEU GLY ASP ILE ILE ASP GLY HIS SEQRES 6 A 322 ASN ARG ARG ARG ASP ALA SER ASP ARG ALA LEU ASP THR SEQRES 7 A 322 VAL MSE ALA GLU LEU ASP ALA CYS SER VAL ASP VAL HIS SEQRES 8 A 322 HIS VAL TRP GLY ASN HIS GLU PHE TYR ASN PHE SER ARG SEQRES 9 A 322 PRO SER LEU LEU SER SER ARG LEU ASN SER ALA GLN ARG SEQRES 10 A 322 THR GLY THR ASP THR GLY SER ASP LEU ILE GLY ASP ASP SEQRES 11 A 322 ILE TYR ALA TYR GLU PHE SER PRO ALA PRO ASN PHE ARG SEQRES 12 A 322 PHE VAL LEU LEU ASP ALA TYR ASP LEU SER VAL ILE GLY SEQRES 13 A 322 ARG GLU GLU GLU SER GLU LYS HIS THR HIS SER TRP ARG SEQRES 14 A 322 ILE LEU THR GLN HIS ASN HIS ASN LEU GLN ASP LEU ASN SEQRES 15 A 322 LEU PRO PRO VAL SER VAL GLY LEU GLU GLN ARG PHE VAL SEQRES 16 A 322 LYS PHE ASN GLY GLY PHE SER GLU GLN GLN LEU GLN TRP SEQRES 17 A 322 LEU ASP ALA VAL LEU THR LEU SER ASP HIS LYS GLN GLU SEQRES 18 A 322 ARG VAL LEU ILE PHE SER HIS LEU PRO VAL HIS PRO CYS SEQRES 19 A 322 ALA ALA ASP PRO ILE CYS LEU ALA TRP ASN HIS GLU ALA SEQRES 20 A 322 VAL LEU SER VAL LEU ARG SER HIS GLN SER VAL LEU CYS SEQRES 21 A 322 PHE ILE ALA GLY HIS ASP HIS ASP GLY GLY ARG CYS THR SEQRES 22 A 322 ASP SER SER GLY ALA GLN HIS ILE THR LEU GLU GLY VAL SEQRES 23 A 322 ILE GLU THR PRO PRO HIS SER HIS ALA PHE ALA THR ALA SEQRES 24 A 322 TYR LEU TYR GLU ASP ARG MSE VAL MSE LYS GLY ARG GLY SEQRES 25 A 322 ARG VAL GLU ASP LEU THR ILE THR TYR SER MODRES 2NXF MSE A 80 MET SELENOMETHIONINE MODRES 2NXF MSE A 306 MET SELENOMETHIONINE MODRES 2NXF MSE A 308 MET SELENOMETHIONINE HET MSE A 80 8 HET MSE A 306 8 HET MSE A 308 8 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET PO4 A 501 5 HET EOH A 502 3 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM EOH ETHANOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 6 PO4 O4 P 3- FORMUL 7 EOH C2 H6 O FORMUL 8 HOH *354(H2 O) HELIX 1 1 ARG A 34 GLU A 50 1 17 HELIX 2 2 GLY A 64 ARG A 69 1 6 HELIX 3 3 ALA A 71 ALA A 85 1 15 HELIX 4 4 GLY A 95 PHE A 102 1 8 HELIX 5 5 SER A 103 SER A 109 1 7 HELIX 6 6 ILE A 127 ASP A 130 5 4 HELIX 7 7 SER A 161 ASN A 175 1 15 HELIX 8 8 GLY A 189 PHE A 194 5 6 HELIX 9 9 SER A 202 GLN A 220 1 19 HELIX 10 10 ASP A 237 LEU A 241 5 5 HELIX 11 11 ASN A 244 SER A 254 1 11 HELIX 12 12 GLY A 285 THR A 289 5 5 SHEET 1 A 6 ASP A 89 HIS A 92 0 SHEET 2 A 6 CYS A 54 GLN A 57 1 N VAL A 55 O HIS A 91 SHEET 3 A 6 PHE A 6 ILE A 11 1 N GLY A 9 O VAL A 56 SHEET 4 A 6 ALA A 295 LEU A 301 -1 O ALA A 299 N PHE A 8 SHEET 5 A 6 ARG A 305 GLY A 312 -1 O LYS A 309 N THR A 298 SHEET 6 A 6 LEU A 317 THR A 320 -1 O LEU A 317 N MSE A 308 SHEET 1 B 2 GLY A 22 GLU A 23 0 SHEET 2 B 2 ARG A 30 ARG A 31 -1 O ARG A 31 N GLY A 22 SHEET 1 C 7 SER A 124 ASP A 125 0 SHEET 2 C 7 TYR A 134 ALA A 139 -1 O GLU A 135 N SER A 124 SHEET 3 C 7 PHE A 142 LEU A 146 -1 O PHE A 144 N PHE A 136 SHEET 4 C 7 ARG A 222 SER A 227 1 O PHE A 226 N VAL A 145 SHEET 5 C 7 VAL A 258 ALA A 263 1 O ILE A 262 N ILE A 225 SHEET 6 C 7 GLN A 279 THR A 282 1 O ILE A 281 N PHE A 261 SHEET 7 C 7 GLY A 270 THR A 273 -1 N CYS A 272 O HIS A 280 SSBOND 1 CYS A 234 CYS A 272 1555 1555 2.01 LINK C VAL A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N ALA A 81 1555 1555 1.34 LINK C ARG A 305 N MSE A 306 1555 1555 1.33 LINK C MSE A 306 N VAL A 307 1555 1555 1.33 LINK C VAL A 307 N MSE A 308 1555 1555 1.33 LINK C MSE A 308 N LYS A 309 1555 1555 1.34 LINK ZN ZN A 401 OE1 GLN A 15 1555 1555 1.99 LINK ZN ZN A 401 O3 PO4 A 501 1555 1555 2.19 LINK ZN ZN A 401 OD2 ASP A 60 1555 1555 2.22 LINK ZN ZN A 401 NE2 HIS A 267 1555 1555 2.25 LINK ZN ZN A 401 OD1 ASP A 13 1555 1555 2.07 LINK ZN ZN A 401 O HOH A 844 1555 1555 2.14 LINK ZN ZN A 402 OD1 ASN A 96 1555 1555 2.14 LINK ZN ZN A 402 O4 PO4 A 501 1555 1555 2.53 LINK ZN ZN A 402 NE2 HIS A 228 1555 1555 2.21 LINK ZN ZN A 402 O HOH A 844 1555 1555 2.15 LINK ZN ZN A 402 ND1 HIS A 265 1555 1555 2.24 LINK ZN ZN A 402 OD2 ASP A 60 1555 1555 2.18 LINK ZN ZN A 403 O HOH A 694 1555 1555 2.13 LINK ZN ZN A 403 NE2 HIS A 174 1555 1555 2.11 LINK ZN ZN A 404 O HOH A 646 1555 1555 2.45 LINK ZN ZN A 404 NE2 HIS A 166 1555 1555 2.15 SITE 1 AC1 7 ASP A 13 GLN A 15 ASP A 60 HIS A 267 SITE 2 AC1 7 ZN A 402 PO4 A 501 HOH A 844 SITE 1 AC2 7 ASP A 60 ASN A 96 HIS A 228 HIS A 265 SITE 2 AC2 7 ZN A 401 PO4 A 501 HOH A 844 SITE 1 AC3 2 HIS A 174 HOH A 694 SITE 1 AC4 4 HIS A 166 ILE A 170 HOH A 628 HOH A 646 SITE 1 AC5 11 GLN A 15 ARG A 31 ASP A 60 ASN A 96 SITE 2 AC5 11 HIS A 97 HIS A 265 HIS A 267 ZN A 401 SITE 3 AC5 11 ZN A 402 HOH A 690 HOH A 844 SITE 1 AC6 5 ARG A 51 VAL A 52 CYS A 86 VAL A 88 SITE 2 AC6 5 HOH A 856 CRYST1 62.584 86.593 157.315 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006357 0.00000 MASTER 429 0 9 12 15 0 11 6 0 0 0 25 END