HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-NOV-06 2NX4 TITLE THE CRYSTAL STRUCTURE OF ATHE PUTATIVE TETR-FAMILY TRANSCRIPTIONAL TITLE 2 REGULATOR RHA06780 FROM RHODOCOCCUS SP. RHA1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP. RHA1; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TETR, HTH DNA BINDING MOTIF, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,E.EVDOKIMOVA,M.KUDRITSKAM,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2NX4 1 VERSN REVDAT 2 24-FEB-09 2NX4 1 VERSN REVDAT 1 19-DEC-06 2NX4 0 JRNL AUTH R.ZHANG,E.EVDOKIMOVA,M.KUDRITSKAM,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM RHODOCOCCUS SP. JRNL REF TO BE PUBLISHED 2006 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 85617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5075 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 286 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6050 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8168 ; 1.123 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 758 ; 4.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;33.845 ;23.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1094 ;13.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 72 ;14.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4596 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3290 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4325 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 532 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3913 ; 0.738 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6024 ; 1.206 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2425 ; 2.427 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2144 ; 3.804 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 RESIDUE RANGE : A 101 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5250 49.8050 54.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.0385 T22: -0.0283 REMARK 3 T33: -0.0272 T12: 0.0006 REMARK 3 T13: 0.0380 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.8915 L22: 0.4461 REMARK 3 L33: 0.5850 L12: 0.0800 REMARK 3 L13: 0.3546 L23: -0.0472 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0667 S13: -0.0583 REMARK 3 S21: 0.0535 S22: 0.0123 S23: 0.0186 REMARK 3 S31: 0.0432 S32: -0.0070 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 100 REMARK 3 RESIDUE RANGE : B 101 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9530 67.6120 70.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: -0.0240 REMARK 3 T33: -0.0585 T12: 0.0453 REMARK 3 T13: -0.0659 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.0312 L22: 1.1042 REMARK 3 L33: 0.2038 L12: -0.6580 REMARK 3 L13: -0.4577 L23: 0.2717 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: -0.1074 S13: 0.1343 REMARK 3 S21: 0.3366 S22: 0.1255 S23: -0.1670 REMARK 3 S31: -0.0014 S32: 0.0493 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 100 REMARK 3 RESIDUE RANGE : C 101 C 193 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2190 74.3580 29.1730 REMARK 3 T TENSOR REMARK 3 T11: -0.0240 T22: -0.0335 REMARK 3 T33: -0.0509 T12: 0.0205 REMARK 3 T13: 0.0283 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.6288 L22: 1.6905 REMARK 3 L33: 1.2396 L12: -0.4670 REMARK 3 L13: -0.1647 L23: -0.1544 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0245 S13: 0.0466 REMARK 3 S21: -0.0813 S22: -0.0051 S23: -0.1580 REMARK 3 S31: 0.0171 S32: 0.1434 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 100 REMARK 3 RESIDUE RANGE : D 101 D 193 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6850 70.7230 35.8540 REMARK 3 T TENSOR REMARK 3 T11: -0.0517 T22: -0.0237 REMARK 3 T33: -0.0169 T12: 0.0256 REMARK 3 T13: 0.0241 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.6715 L22: 2.3972 REMARK 3 L33: 1.2205 L12: 0.2870 REMARK 3 L13: -0.2768 L23: -0.3676 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0549 S13: 0.0461 REMARK 3 S21: 0.0272 S22: 0.0943 S23: 0.3817 REMARK 3 S31: 0.0082 S32: -0.1619 S33: -0.0991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-06. REMARK 100 THE RCSB ID CODE IS RCSB040410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85617 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 69.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FORMATE, 26% PEG3350, PH REMARK 280 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.41300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXIST AS DIMER. THERE ARE TWO DIMERS (A/B, C/ REMARK 300 D) IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 0 REMARK 465 VAL C 1 REMARK 465 PRO C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 4 REMARK 465 VAL C 5 REMARK 465 ASP C 6 REMARK 465 GLY D 0 REMARK 465 VAL D 1 REMARK 465 PRO D 2 REMARK 465 LYS D 3 REMARK 465 LEU D 4 REMARK 465 VAL D 5 REMARK 465 ASP D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU B 21 OE2 GLU B 38 1.37 REMARK 500 NH1 ARG D 58 OE2 GLU D 62 2.16 REMARK 500 O ALA A 121 O HOH A 248 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 HIS C 7 N HIS D 7 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 38 CB GLU C 38 CG -0.146 REMARK 500 GLU C 38 CD GLU C 38 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 119 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 MET C 185 CG - SD - CE ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 8 -70.92 -129.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MET A 119 20.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 347 DISTANCE = 5.03 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5889 RELATED DB: TARGETDB DBREF 2NX4 A 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 DBREF 2NX4 B 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 DBREF 2NX4 C 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 DBREF 2NX4 D 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 SEQADV 2NX4 GLY A 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL A 1 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 GLY B 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL B 1 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 GLY C 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL C 1 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 GLY D 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL D 1 UNP Q0SCU8 CLONING ARTIFACT SEQRES 1 A 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 A 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 A 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 A 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 A 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 A 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 A 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 A 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 A 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 A 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 A 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 A 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 A 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 A 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 A 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU SEQRES 1 B 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 B 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 B 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 B 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 B 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 B 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 B 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 B 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 B 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 B 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 B 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 B 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 B 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 B 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 B 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU SEQRES 1 C 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 C 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 C 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 C 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 C 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 C 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 C 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 C 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 C 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 C 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 C 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 C 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 C 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 C 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 C 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU SEQRES 1 D 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 D 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 D 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 D 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 D 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 D 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 D 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 D 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 D 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 D 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 D 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 D 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 D 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 D 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 D 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU FORMUL 5 HOH *611(H2 O) HELIX 1 1 PRO A 2 GLY A 26 1 25 HELIX 2 2 ASN A 31 GLY A 40 1 10 HELIX 3 3 THR A 42 PHE A 50 1 9 HELIX 4 4 GLY A 52 GLY A 77 1 26 HELIX 5 5 THR A 80 MET A 93 1 14 HELIX 6 6 ASN A 96 MET A 114 1 19 HELIX 7 7 GLU A 117 GLY A 145 1 29 HELIX 8 8 ASP A 151 THR A 173 1 23 HELIX 9 9 SER A 178 ALA A 192 1 15 HELIX 10 10 GLY B 0 GLY B 26 1 27 HELIX 11 11 ASN B 31 GLY B 40 1 10 HELIX 12 12 THR B 42 SER B 47 1 6 HELIX 13 13 GLY B 52 GLY B 77 1 26 HELIX 14 14 THR B 80 MET B 93 1 14 HELIX 15 15 ASN B 96 MET B 114 1 19 HELIX 16 16 ASP B 116 GLY B 145 1 30 HELIX 17 17 ASP B 151 THR B 173 1 23 HELIX 18 18 SER B 178 ALA B 192 1 15 HELIX 19 19 ASP C 8 GLY C 26 1 19 HELIX 20 20 ASN C 31 GLY C 40 1 10 HELIX 21 21 THR C 42 HIS C 48 1 7 HELIX 22 22 GLY C 52 GLY C 77 1 26 HELIX 23 23 THR C 80 MET C 93 1 14 HELIX 24 24 ASN C 96 MET C 114 1 19 HELIX 25 25 ASP C 116 GLY C 145 1 30 HELIX 26 26 ASP C 151 THR C 173 1 23 HELIX 27 27 SER C 178 ALA C 192 1 15 HELIX 28 28 HIS D 7 GLY D 26 1 20 HELIX 29 29 ASN D 31 GLY D 40 1 10 HELIX 30 30 THR D 42 HIS D 48 1 7 HELIX 31 31 GLY D 52 GLY D 77 1 26 HELIX 32 32 THR D 80 MET D 93 1 14 HELIX 33 33 ASN D 96 MET D 114 1 19 HELIX 34 34 ASP D 116 GLY D 145 1 30 HELIX 35 35 ASP D 151 THR D 173 1 23 HELIX 36 36 SER D 178 ALA D 192 1 15 CRYST1 54.439 114.826 73.519 90.00 110.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018369 0.000000 0.006716 0.00000 SCALE2 0.000000 0.008709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014483 0.00000 MASTER 460 0 0 36 0 0 0 6 0 0 0 60 END