HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-OCT-06 2NN5 TITLE STRUCTURE OF CONSERVED PROTEIN OF UNKNOWN FUNCTION EF2215 FROM TITLE 2 ENTEROCOCCUS FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN EF_2215; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 GENE: EF_2215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, APC29336, HYPOTHETICAL PROTEIN, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.WU,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2NN5 1 VERSN REVDAT 2 24-FEB-09 2NN5 1 VERSN REVDAT 1 21-NOV-06 2NN5 0 JRNL AUTH J.OSIPIUK,R.WU,S.MOY,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN JRNL TITL 2 EF_2215 FROM ENTEROCOCCUS FAECALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1640 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2269 ; 1.900 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 5.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;35.509 ;25.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;15.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.803 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 248 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1294 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 777 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1143 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.248 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 974 ; 1.891 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 2.661 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 773 ; 4.322 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 671 ; 5.223 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1747 ; 3.677 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 233 ; 6.817 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1572 ; 4.462 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB040065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : STRUCTURESTUDIO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 34.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M MES REMARK 280 BUFFER, 30% PEG 4000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.11350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.38300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.11350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.38300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.11350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.51500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.38300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.11350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.51500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.38300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC REMARK 300 UNIT WHICH CONSISTS OF 1 CHAIN. THE AUTHOR STATES REMARK 300 THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 348 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 343 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 363 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 519 O HOH A 533 1.95 REMARK 500 O HOH A 358 O HOH A 517 2.06 REMARK 500 O HOH A 386 O HOH A 503 2.07 REMARK 500 O HOH A 374 O HOH A 519 2.07 REMARK 500 O HOH A 374 O HOH A 533 2.09 REMARK 500 O HOH A 469 O HOH A 525 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 470 O HOH A 525 8455 2.07 REMARK 500 O HOH A 358 O HOH A 535 7545 2.08 REMARK 500 O HOH A 414 O HOH A 517 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 4 OG1 - CB - CG2 ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 -8.03 65.29 REMARK 500 LYS A 75 -58.93 -131.34 REMARK 500 ASP A 82 -133.57 59.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 384 DISTANCE = 5.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 140 OE2 REMARK 620 2 EDO A 302 O1 91.9 REMARK 620 3 HOH A 341 O 87.0 91.2 REMARK 620 4 HOH A 356 O 90.2 88.6 177.2 REMARK 620 5 HOH A 390 O 177.5 89.7 91.0 91.7 REMARK 620 6 HOH A 340 O 90.7 176.4 91.5 88.9 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 496 O REMARK 620 2 HOH A 337 O 89.3 REMARK 620 3 HOH A 447 O 88.7 177.1 REMARK 620 4 HOH A 514 O 172.9 92.0 90.2 REMARK 620 5 HOH A 524 O 82.9 87.6 94.2 90.1 REMARK 620 6 HOH A 366 O 92.0 90.7 87.4 95.0 174.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC29336 RELATED DB: TARGETDB DBREF 2NN5 A 1 160 UNP Q832L1 Q832L1_ENTFA 1 160 SEQADV 2NN5 MSE A -23 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 HIS A -22 UNP Q832L1 EXPRESSION TAG SEQADV 2NN5 HIS A -21 UNP Q832L1 EXPRESSION TAG SEQADV 2NN5 HIS A -20 UNP Q832L1 EXPRESSION TAG SEQADV 2NN5 HIS A -19 UNP Q832L1 EXPRESSION TAG SEQADV 2NN5 HIS A -18 UNP Q832L1 EXPRESSION TAG SEQADV 2NN5 HIS A -17 UNP Q832L1 EXPRESSION TAG SEQADV 2NN5 SER A -16 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 SER A -15 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 GLY A -14 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 VAL A -13 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 ASP A -12 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 LEU A -11 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 GLY A -10 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 THR A -9 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 GLU A -8 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 ASN A -7 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 LEU A -6 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 TYR A -5 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 PHE A -4 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 GLN A -3 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 SER A -2 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 ASN A -1 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 ALA A 0 UNP Q832L1 CLONING ARTIFACT SEQADV 2NN5 MSE A 1 UNP Q832L1 MET 1 MODIFIED RESIDUE SEQADV 2NN5 MSE A 66 UNP Q832L1 MET 66 MODIFIED RESIDUE SEQRES 1 A 184 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 184 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MSE LYS SEQRES 3 A 184 ASP THR PHE ARG LEU GLU ASN GLN THR ILE TYR PHE GLY SEQRES 4 A 184 THR GLU ARG ALA ILE SER ALA SER PRO GLN THR ILE TRP SEQRES 5 A 184 ARG TYR LEU THR GLU THR ASP LYS LEU LYS GLN TRP PHE SEQRES 6 A 184 PRO GLU LEU GLU ILE GLY GLU LEU GLY VAL ASN GLY PHE SEQRES 7 A 184 TRP ARG PHE ILE LEU PRO ASP PHE GLU GLU THR MSE PRO SEQRES 8 A 184 PHE THR ASP TYR ALA GLU GLU LYS TYR LEU GLY VAL THR SEQRES 9 A 184 TRP ASP THR GLY ILE ILE TYR PHE ASP LEU LYS GLU GLN SEQRES 10 A 184 ALA PRO HIS GLN THR LEU LEU VAL PHE SER GLU SER LEU SEQRES 11 A 184 PRO GLU ASN PHE THR THR PRO ARG HIS LYS ASP ILE ALA SEQRES 12 A 184 GLY TRP SER ILE VAL LEU ASN ARG LEU LYS GLN VAL VAL SEQRES 13 A 184 GLU THR PRO ASP ALA ALA PRO GLU LYS ILE ASP PHE PRO SEQRES 14 A 184 GLN ILE GLU ASN HIS TYR LEU GLU LYS LEU THR ASN LEU SEQRES 15 A 184 GLU ASN MODRES 2NN5 MSE A 1 MET SELENOMETHIONINE MODRES 2NN5 MSE A 66 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 66 13 HET MG A 303 1 HET MG A 304 1 HET EDO A 301 4 HET EDO A 302 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 MG 2(MG 2+) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *231(H2 O) HELIX 1 1 THR A -9 ALA A 0 1 10 HELIX 2 2 SER A 23 GLU A 33 1 11 HELIX 3 3 GLU A 33 PHE A 41 1 9 HELIX 4 4 PRO A 113 THR A 134 1 22 HELIX 5 5 ASP A 143 GLU A 159 1 17 SHEET 1 A 8 THR A 4 GLU A 8 0 SHEET 2 A 8 THR A 11 ILE A 20 -1 O TYR A 13 N ARG A 6 SHEET 3 A 8 GLN A 97 LEU A 106 -1 O LEU A 106 N ILE A 12 SHEET 4 A 8 GLY A 84 ALA A 94 -1 N LYS A 91 O LEU A 99 SHEET 5 A 8 TYR A 76 TRP A 81 -1 N LEU A 77 O PHE A 88 SHEET 6 A 8 PHE A 62 ALA A 72 -1 N ALA A 72 O TYR A 76 SHEET 7 A 8 PHE A 54 LEU A 59 -1 N TRP A 55 O MSE A 66 SHEET 8 A 8 LEU A 44 GLU A 48 -1 N GLU A 45 O ARG A 56 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C THR A 65 N MSE A 66 1555 1555 1.34 LINK C MSE A 66 N PRO A 67 1555 1555 1.33 LINK MG MG A 303 OE2 GLU A 140 1555 1555 2.02 LINK MG MG A 303 O1 EDO A 302 1555 1555 2.17 LINK MG MG A 303 O HOH A 341 1555 1555 2.11 LINK MG MG A 303 O HOH A 356 1555 1555 2.02 LINK MG MG A 303 O HOH A 390 1555 1555 2.14 LINK MG MG A 303 O HOH A 340 1555 1555 2.05 LINK MG MG A 304 O HOH A 496 1555 1555 2.13 LINK MG MG A 304 O HOH A 337 1555 1555 2.00 LINK MG MG A 304 O HOH A 447 1555 1555 2.07 LINK MG MG A 304 O HOH A 514 1555 1555 2.09 LINK MG MG A 304 O HOH A 524 1555 1555 2.16 LINK MG MG A 304 O HOH A 366 1555 1555 2.02 SITE 1 AC1 6 GLU A 140 EDO A 302 HOH A 340 HOH A 341 SITE 2 AC1 6 HOH A 356 HOH A 390 SITE 1 AC2 6 HOH A 337 HOH A 366 HOH A 447 HOH A 496 SITE 2 AC2 6 HOH A 514 HOH A 524 SITE 1 AC3 4 ARG A 114 HIS A 115 HOH A 319 HOH A 345 SITE 1 AC4 9 GLU A 8 GLN A 130 ALA A 137 GLU A 140 SITE 2 AC4 9 MG A 303 HOH A 341 HOH A 356 HOH A 390 SITE 3 AC4 9 HOH A 445 CRYST1 58.227 69.030 86.766 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011525 0.00000 MASTER 410 0 6 5 8 0 8 6 0 0 0 15 END