HEADER TRANSLATION 20-OCT-06 2NLW TITLE SOLUTION STRUCTURE OF THE RRM DOMAIN OF HUMAN EUKARYOTIC TITLE 2 INITIATION FACTOR 3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 COMPND 3 SUBUNIT 9; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 6 SYNONYM: EIF-3 ETA, EIF3 P116, EIF3 P110, EIF3B, PRT1 COMPND 7 HOMOLOG, HPRT1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF3S9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSLATION INITIATION, EUKARYOTIC INITIATION FACTOR 3 KEYWDS 2 COMPLEX, RNA RECOGNITION MOTIF EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR L.ELANTAK,A.G.TZAKOS,N.LOCKER,P.J.LUKAVSKY REVDAT 3 24-FEB-09 2NLW 1 VERSN REVDAT 2 08-JUL-08 2NLW 1 JRNL REVDAT 1 06-FEB-07 2NLW 0 JRNL AUTH L.ELANTAK,A.G.TZAKOS,N.LOCKER,P.J.LUKAVSKY JRNL TITL STRUCTURE OF EIF3B RNA RECOGNITION MOTIF AND ITS JRNL TITL 2 INTERACTION WITH EIF3J: STRUCTURAL INSIGHTS INTO JRNL TITL 3 THE RECRUITMENT OF EIF3B TO THE 40 S RIBOSOMAL JRNL TITL 4 SUBUNIT. JRNL REF J.BIOL.CHEM. V. 282 8165 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17190833 JRNL DOI 10.1074/JBC.M610860200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NLW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB040022. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 300MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM EIF3B-RRM UNLABELED, REMARK 210 20MM HEPES, 90% H2O, 10% D2O; REMARK 210 0.8MM EIF3B-RRM U-15N, 20MM REMARK 210 HEPES, 90% H2O, 10% D2O; 0.8MM REMARK 210 EIF3B-RRM U-15N,13C, 20MM REMARK 210 HEPES, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX, DMX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3.98, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 REFINEMENT BY RESTRAINED REMARK 210 MOLECULAR DYNAMICS IN A REMARK 210 HYDRATED ENVIRONMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 22 89.18 41.50 REMARK 500 1 THR A 60 129.19 -34.66 REMARK 500 1 PRO A 71 6.90 -36.64 REMARK 500 1 ALA A 72 63.31 84.56 REMARK 500 1 LYS A 88 -91.47 45.41 REMARK 500 1 HIS A 90 99.61 -62.54 REMARK 500 1 LEU A 96 -166.56 -102.76 REMARK 500 2 ASN A 22 92.03 46.58 REMARK 500 2 GLN A 25 -165.82 -61.84 REMARK 500 2 PRO A 71 8.05 -37.66 REMARK 500 2 ALA A 72 67.42 87.47 REMARK 500 2 ASN A 80 -71.91 -62.23 REMARK 500 2 ALA A 81 124.13 -177.30 REMARK 500 2 LYS A 88 -81.79 -36.20 REMARK 500 2 THR A 98 28.19 -72.29 REMARK 500 2 PHE A 100 35.06 -92.35 REMARK 500 2 ASP A 101 62.12 -150.81 REMARK 500 3 ASN A 22 97.92 45.70 REMARK 500 3 GLU A 55 -176.78 -173.98 REMARK 500 3 THR A 60 92.26 -56.95 REMARK 500 3 PRO A 71 8.71 -37.48 REMARK 500 3 ALA A 72 62.21 84.84 REMARK 500 3 ASN A 80 -63.68 -92.86 REMARK 500 3 LYS A 88 -95.56 40.24 REMARK 500 4 VAL A 3 29.25 -63.91 REMARK 500 4 ASP A 6 28.62 -78.37 REMARK 500 4 ASN A 22 104.76 31.68 REMARK 500 4 LYS A 61 176.26 -59.49 REMARK 500 4 PRO A 71 9.27 -35.52 REMARK 500 4 ALA A 72 65.20 87.11 REMARK 500 4 ASN A 80 -77.31 -81.96 REMARK 500 4 LYS A 88 -103.54 38.23 REMARK 500 5 VAL A 3 12.25 -146.94 REMARK 500 5 ASN A 22 90.57 44.27 REMARK 500 5 GLU A 56 114.85 -162.20 REMARK 500 5 LYS A 61 167.92 179.87 REMARK 500 5 ALA A 72 7.78 25.31 REMARK 500 5 PHE A 100 66.52 -59.14 REMARK 500 6 VAL A 3 -33.54 67.23 REMARK 500 6 GLU A 10 20.12 -74.61 REMARK 500 6 ASN A 22 95.37 42.57 REMARK 500 6 ASP A 29 18.04 55.90 REMARK 500 6 THR A 49 -61.22 -126.38 REMARK 500 6 THR A 60 108.00 -28.79 REMARK 500 6 ALA A 72 4.47 25.07 REMARK 500 6 PHE A 97 58.45 -108.14 REMARK 500 6 THR A 98 78.80 -47.69 REMARK 500 6 ASP A 99 -45.70 -141.06 REMARK 500 6 ASP A 101 74.11 -105.47 REMARK 500 6 TYR A 103 -69.04 -140.41 REMARK 500 7 ASP A 15 44.76 -93.13 REMARK 500 7 ASN A 22 85.65 44.57 REMARK 500 7 GLU A 55 -175.30 -173.34 REMARK 500 7 THR A 60 124.13 -34.03 REMARK 500 7 PRO A 71 8.83 -38.25 REMARK 500 7 ALA A 72 63.34 87.37 REMARK 500 7 LYS A 88 -88.70 47.04 REMARK 500 7 THR A 98 76.13 -69.21 REMARK 500 8 VAL A 3 -76.86 -33.92 REMARK 500 8 ASP A 15 28.17 -141.84 REMARK 500 8 ASN A 22 106.92 -29.50 REMARK 500 8 PRO A 71 9.18 -34.96 REMARK 500 8 ALA A 72 65.59 86.18 REMARK 500 8 LYS A 88 -107.19 45.99 REMARK 500 8 HIS A 90 93.79 -68.27 REMARK 500 8 LEU A 96 -166.06 -79.31 REMARK 500 9 ASN A 22 86.65 45.94 REMARK 500 9 PRO A 24 150.19 -45.92 REMARK 500 9 PRO A 71 8.61 -36.40 REMARK 500 9 ALA A 72 62.59 86.45 REMARK 500 9 LEU A 86 -71.82 -85.96 REMARK 500 9 LYS A 88 -95.93 52.58 REMARK 500 9 THR A 98 -21.39 66.53 REMARK 500 9 PHE A 100 89.75 37.31 REMARK 500 10 ASN A 22 86.79 46.06 REMARK 500 10 ASP A 57 27.36 48.78 REMARK 500 10 PRO A 71 8.69 -36.10 REMARK 500 10 ALA A 72 62.43 85.94 REMARK 500 10 ASN A 80 -76.55 -60.06 REMARK 500 10 ALA A 81 106.54 177.32 REMARK 500 10 LYS A 88 -92.33 42.15 REMARK 500 10 LEU A 96 -163.10 -108.64 REMARK 500 11 LEU A 4 -61.53 -96.53 REMARK 500 11 ASP A 15 62.37 -151.22 REMARK 500 11 ASN A 22 104.14 45.88 REMARK 500 11 ASP A 29 17.87 58.62 REMARK 500 11 GLU A 55 -175.87 -173.80 REMARK 500 11 PRO A 71 6.61 -39.16 REMARK 500 11 ALA A 72 65.25 87.23 REMARK 500 11 ASN A 80 -68.38 -109.89 REMARK 500 11 ALA A 81 75.41 -115.66 REMARK 500 11 ASP A 87 149.00 -174.21 REMARK 500 11 LYS A 88 -81.61 58.92 REMARK 500 11 ASP A 101 79.61 -101.71 REMARK 500 12 ASN A 22 85.64 48.34 REMARK 500 12 ASP A 57 56.21 39.66 REMARK 500 12 TYR A 63 148.21 -170.81 REMARK 500 12 PRO A 71 7.55 -39.99 REMARK 500 12 ALA A 72 66.77 87.36 REMARK 500 12 ASP A 87 -76.13 -151.54 REMARK 500 12 LYS A 88 -101.21 -100.86 REMARK 500 12 ASP A 101 125.47 166.69 REMARK 500 13 ASP A 6 -49.18 72.32 REMARK 500 13 ALA A 11 98.41 -64.35 REMARK 500 13 ASP A 15 40.49 -103.75 REMARK 500 13 ASN A 22 100.27 47.79 REMARK 500 13 GLU A 55 -175.51 -176.37 REMARK 500 13 PRO A 71 7.63 -39.88 REMARK 500 13 ALA A 72 65.45 84.41 REMARK 500 13 ALA A 81 87.97 -155.90 REMARK 500 13 TYR A 84 99.33 -67.59 REMARK 500 13 LEU A 96 -167.54 -79.42 REMARK 500 13 ASP A 101 77.52 -117.64 REMARK 500 13 TYR A 103 76.36 -118.06 REMARK 500 14 VAL A 3 128.30 178.66 REMARK 500 14 ASN A 22 80.50 42.93 REMARK 500 14 ALA A 72 5.79 26.52 REMARK 500 14 ASN A 80 -84.18 -75.42 REMARK 500 14 LYS A 88 -104.04 51.79 REMARK 500 15 ASN A 22 83.66 47.41 REMARK 500 15 THR A 60 106.16 -57.15 REMARK 500 15 PRO A 71 8.45 -37.59 REMARK 500 15 ALA A 72 64.64 85.33 REMARK 500 15 LYS A 88 -75.41 -27.60 REMARK 500 15 LEU A 96 -175.45 -69.48 REMARK 500 16 ASN A 22 81.67 44.17 REMARK 500 16 GLU A 55 -175.49 -175.05 REMARK 500 16 ALA A 72 4.07 25.80 REMARK 500 16 LYS A 88 -93.74 53.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 71 ALA A 72 5 142.13 REMARK 500 PRO A 71 ALA A 72 6 144.99 REMARK 500 PRO A 71 ALA A 72 14 144.25 REMARK 500 PRO A 71 ALA A 72 16 148.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 15 ARG A 93 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2NLW A 1 105 UNP P55884 IF39_HUMAN 170 274 SEQRES 1 A 105 GLY ASP VAL LEU LYS ASP ARG PRO GLN GLU ALA ASP GLY SEQRES 2 A 105 ILE ASP SER VAL ILE VAL VAL ASP ASN VAL PRO GLN VAL SEQRES 3 A 105 GLY PRO ASP ARG LEU GLU LYS LEU LYS ASN VAL ILE HIS SEQRES 4 A 105 LYS ILE PHE SER LYS PHE GLY LYS ILE THR ASN ASP PHE SEQRES 5 A 105 TYR PRO GLU GLU ASP GLY LYS THR LYS GLY TYR ILE PHE SEQRES 6 A 105 LEU GLU TYR ALA SER PRO ALA HIS ALA VAL ASP ALA VAL SEQRES 7 A 105 LYS ASN ALA ASP GLY TYR LYS LEU ASP LYS GLN HIS THR SEQRES 8 A 105 PHE ARG VAL ASN LEU PHE THR ASP PHE ASP LYS TYR MET SEQRES 9 A 105 THR HELIX 1 1 GLU A 32 SER A 43 1 12 HELIX 2 2 LYS A 44 GLY A 46 5 3 HELIX 3 3 ALA A 72 ALA A 81 1 10 SHEET 1 A 5 ILE A 48 PHE A 52 0 SHEET 2 A 5 TYR A 63 TYR A 68 -1 O GLU A 67 N ASN A 50 SHEET 3 A 5 VAL A 17 ASP A 21 -1 N ILE A 18 O LEU A 66 SHEET 4 A 5 THR A 91 ASN A 95 -1 O ASN A 95 N VAL A 19 SHEET 5 A 5 TYR A 84 LYS A 85 -1 N TYR A 84 O PHE A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 233 0 0 3 5 0 0 6 0 0 0 9 END