HEADER RNA 01-APR-16 2NCI TITLE RNA BULGE LOOP THAT SPECIFICALLY BINDS METAL IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (28-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: TRANSCRIPTION OF RNA USING T7 POLYMERASE KEYWDS RNA, BULGE LOOP EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.GU,S.J.SCHROEDER REVDAT 4 19-OCT-16 2NCI 1 JRNL REVDAT 3 12-OCT-16 2NCI 1 JRNL REVDAT 2 05-OCT-16 2NCI 1 JRNL REVDAT 1 28-SEP-16 2NCI 0 JRNL AUTH X.GU,S.Y.PARK,M.TONELLI,G.CORNILESCU,T.XIA,D.ZHONG, JRNL AUTH 2 S.J.SCHROEDER JRNL TITL NMR STRUCTURES AND DYNAMICS IN A PROHEAD RNA LOOP THAT BINDS JRNL TITL 2 METAL IONS. JRNL REF J PHYS CHEM LETT V. 7 3841 2016 JRNL REFN ESSN 1948-7185 JRNL PMID 27631837 JRNL DOI 10.1021/ACS.JPCLETT.6B01465 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-16. REMARK 100 THE RCSB ID CODE IS RCSB104694. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 274 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : 20; 20 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-98% 13C; U-98% 15N] REMARK 210 ADENOSINE-5'-MONOPHOSPHATE, 1.5 REMARK 210 MM [U-98% 13C; U-98% 15N] URIDINE REMARK 210 -5'-MONOPHOSPHATE, 1.5 MM REMARK 210 GUANOSINE-5'-MONOPHOSPHATE, 1.5 REMARK 210 MM CYTIDINE-5'-MONOPHOSPHATE, 1.5 REMARK 210 MM COBALT HEXAMINE, 10 MM SODIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 100% D2O; 1 MM GUANOSINE-5'- REMARK 210 MONOPHOSPHATE, 1 MM ADENOSINE-5'- REMARK 210 MONOPHOSPHATE, 1 MM CYTIDINE-5'- REMARK 210 MONOPHOSPHATE, 1 MM URIDINE-5'- REMARK 210 MONOPHOSPHATE, 1 MM COBALT REMARK 210 HEXAMINE, 10 MM SODIUM CHLORIDE, REMARK 210 10 MM SODIUM PHOSPHATE, 90% H2O/ REMARK 210 10% D2O; 1.5 MM [U-98% 13C; U-98% REMARK 210 15N] ADENOSINE-5'-MONOPHOSPHATE, REMARK 210 1.5 MM [U-98% 13C; U-98% 15N] REMARK 210 URIDINE-5'-MONOPHOSPHATE, 1.5 MM REMARK 210 GUANOSINE-5'-MONOPHOSPHATE, 1.5 REMARK 210 MM CYTIDINE-5'-MONOPHOSPHATE, 1.5 REMARK 210 MM COBALT HEXAMINE, 5 MG/ML REMARK 210 PHAGE, 10 MM SODIUM CHLORIDE, 10 REMARK 210 MM SODIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 3D HCCH-TOCSY; REMARK 210 2D NOESY13CHSQC; 2D HCNTROSY; 2D REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 900 MHZ; 800 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; INOVA; NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 G A 1 O5' REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26024 RELATED DB: BMRB DBREF 2NCI A 1 28 PDB 2NCI 2NCI 1 28 SEQRES 1 A 28 G G A C G U U A A A A G G SEQRES 2 A 28 C U U C G G C C U A C G U SEQRES 3 A 28 C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 99 0 0 0 0 0 0 6 0 0 0 3 END