HEADER DE NOVO PROTEIN 05-MAR-16 2NBL TITLE PEPTIDE MODEL OF 4-STRANDED BETA-ARCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED BETA-ARCH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_TAXID: 32630 KEYWDS DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.M.KUNG REVDAT 1 08-MAR-17 2NBL 0 JRNL AUTH V.KUNG JRNL TITL A DESIGNED PEPTIDE MODEL OF EARLY-STAGE AMYLOID STRUCTURES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.35 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-16. REMARK 100 THE RCSB ID CODE IS RCSB104663. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 3.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.35 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: WARNINGS ABOUT RESIDUES THAT 'ARE NOT PROPERLY LINKED' AND REMARK 210 'MISSING ATOMS' OCCUR WHERE THERE ARE NON-NATURAL RESIDUES AND REMARK 210 REVERSALS IN THE CHAIN DIRECTIONS, AND THERE ARE NO REAL PROBLEMS REMARK 210 WITH THESE STRETCHES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 4FU A 6 O7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 8 179.80 88.66 REMARK 500 1 THR A 9 161.35 66.94 REMARK 500 1 ILE A 10 -45.59 -163.92 REMARK 500 1 MET A 12 142.11 59.15 REMARK 500 1 DAL A 14 165.27 -71.62 REMARK 500 1 HIS A 16 10.77 -149.24 REMARK 500 1 DAL A 17 151.82 174.73 REMARK 500 2 VAL A 8 159.49 47.73 REMARK 500 2 ILE A 10 -161.43 -69.40 REMARK 500 2 ARG A 13 -155.13 34.70 REMARK 500 2 DAL A 14 146.53 -59.86 REMARK 500 3 DAL A 14 154.33 -98.75 REMARK 500 3 HIS A 16 41.22 -154.58 REMARK 500 3 DAL A 17 164.29 54.52 REMARK 500 4 ARG A 11 161.88 -43.16 REMARK 500 4 DAL A 14 136.27 104.10 REMARK 500 4 HIS A 16 59.32 -164.80 REMARK 500 4 DAL A 17 126.56 -177.01 REMARK 500 4 VAL A 20 93.83 -163.08 REMARK 500 5 ARG A 13 122.99 -172.84 REMARK 500 5 DAL A 14 159.57 173.35 REMARK 500 5 HIS A 16 27.76 33.79 REMARK 500 5 DAL A 17 168.95 165.82 REMARK 500 5 GLN A 21 48.62 -172.36 REMARK 500 6 ARG A 11 31.49 -156.11 REMARK 500 6 ARG A 13 -164.09 38.64 REMARK 500 6 DAL A 14 -39.15 173.05 REMARK 500 6 DAL A 17 136.22 166.29 REMARK 500 6 GLN A 21 62.99 -156.73 REMARK 500 7 VAL A 8 -168.64 -52.75 REMARK 500 7 THR A 9 167.66 -43.56 REMARK 500 7 ARG A 11 43.86 -68.55 REMARK 500 7 ARG A 13 -112.25 -109.30 REMARK 500 7 DAL A 14 154.76 163.34 REMARK 500 8 ILE A 10 -148.83 -153.56 REMARK 500 8 DAL A 14 158.56 175.84 REMARK 500 8 HIS A 16 20.25 -159.18 REMARK 500 8 DAL A 17 173.52 -166.98 REMARK 500 9 ARG A 13 -120.77 51.11 REMARK 500 9 DAL A 14 148.41 -46.89 REMARK 500 9 DAL A 17 132.53 -177.67 REMARK 500 9 GLN A 21 -52.32 118.85 REMARK 500 10 ILE A 10 62.11 -175.16 REMARK 500 10 ARG A 11 -136.45 -63.96 REMARK 500 10 MET A 12 -168.15 41.77 REMARK 500 10 DAL A 14 177.27 -150.81 REMARK 500 10 HIS A 16 16.52 -168.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25982 RELATED DB: BMRB DBREF 2NBL A 0 30 PDB 2NBL 2NBL 0 30 SEQRES 1 A 31 NH2 THR GLU ILE ARG VAL 4FU GLY VAL THR ILE ARG MET SEQRES 2 A 31 ARG DAL SER HIS DAL PHE TRP VAL GLN VAL DPR 4G6 LYS SEQRES 3 A 31 GLU PHE LYS HIS ACE HET NH2 A 0 3 HET 4FU A 6 20 HET DAL A 14 10 HET DAL A 17 10 HET DPR A 23 14 HET 4G6 A 24 16 HET ACE A 30 6 HETNAM NH2 AMINO GROUP HETNAM 4FU (1R,2S)-CYCLOHEXANE-1,2-DICARBOXYLIC ACID HETNAM DAL D-ALANINE HETNAM DPR D-PROLINE HETNAM 4G6 2-METHYLPROPANE-1,2-DIAMINE HETNAM ACE ACETYL GROUP FORMUL 1 NH2 H2 N FORMUL 1 4FU C8 H12 O4 FORMUL 1 DAL 2(C3 H7 N O2) FORMUL 1 DPR C5 H9 N O2 FORMUL 1 4G6 C4 H12 N2 FORMUL 1 ACE C2 H4 O LINK N NH2 A 0 C THR A 1 1555 1555 1.31 LINK N VAL A 5 C15 4FU A 6 1555 1555 1.31 LINK C7 4FU A 6 N GLY A 7 1555 1555 1.31 LINK N HIS A 29 C ACE A 30 1555 1555 1.33 LINK NAC 4G6 A 24 C LYS A 25 1555 1555 1.31 LINK N LYS A 28 C HIS A 29 1555 1555 1.33 LINK N ARG A 4 C VAL A 5 1555 1555 1.33 LINK N ILE A 3 C ARG A 4 1555 1555 1.33 LINK N GLU A 2 C ILE A 3 1555 1555 1.33 LINK N PHE A 27 C LYS A 28 1555 1555 1.33 LINK N THR A 1 C GLU A 2 1555 1555 1.33 LINK N GLU A 26 C PHE A 27 1555 1555 1.33 LINK N LYS A 25 C GLU A 26 1555 1555 1.34 LINK C ARG A 13 N DAL A 14 1555 1555 1.33 LINK C DAL A 14 N SER A 15 1555 1555 1.33 LINK C HIS A 16 N DAL A 17 1555 1555 1.32 LINK C DAL A 17 N PHE A 18 1555 1555 1.32 LINK C VAL A 22 N DPR A 23 1555 1555 1.31 LINK C DPR A 23 NAD 4G6 A 24 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 141 0 7 0 0 0 0 6 0 0 0 3 END