HEADER LIPID BINDING PROTEIN 15-JUL-15 2N5E TITLE THE 3D SOLUTION STRUCTURE OF DISCOIDAL HIGH-DENSITY LIPOPROTEIN TITLE 2 PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN A-I; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APO-AI, APOA-I, APOLIPOPROTEIN A1, PROAPOLIPOPROTEIN A-I, COMPND 5 PROAPOA-I, TRUNCATED APOLIPOPROTEIN A-I, APOLIPOPROTEIN A-I(1-242); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS NANODISC, HDL, LIPOPROTEINS, CARDIOVASCULAR DISEASE, LIPID BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.BIBOW,Y.POLYHACH,C.EICHMANN,C.N.CHI,J.KOWAL,H.STAHLBERG,G.JESCHKE, AUTHOR 2 P.GUENTERT,R.RIEK REVDAT 3 22-FEB-17 2N5E 1 JRNL REVDAT 2 11-JAN-17 2N5E 1 JRNL REVDAT 1 21-DEC-16 2N5E 0 JRNL AUTH S.BIBOW,Y.POLYHACH,C.EICHMANN,C.N.CHI,J.KOWAL,S.ALBIEZ, JRNL AUTH 2 R.A.MCLEOD,H.STAHLBERG,G.JESCHKE,P.GUNTERT,R.RIEK JRNL TITL SOLUTION STRUCTURE OF DISCOIDAL HIGH-DENSITY LIPOPROTEIN JRNL TITL 2 PARTICLES WITH A SHORTENED APOLIPOPROTEIN A-I. JRNL REF NAT.STRUCT.MOL.BIOL. V. 24 187 2017 JRNL REFN ISSN 1545-9993 JRNL PMID 28024148 JRNL DOI 10.1038/NSMB.3345 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, BRAUN AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-15. REMARK 100 THE RCSB ID CODE IS RCSB104443. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 316 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-99% 13C; U-99% REMARK 210 15N] H2O, 1 MM STEREOSPECIFIC REMARK 210 METHYL-LABELING H2O, 1 MM REMARK 210 SELECTIVE UNLABELING H2O, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA 3.97 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 57 -67.46 -128.08 REMARK 500 1 THR A 242 -68.05 73.92 REMARK 500 1 PHE B 57 -67.42 -128.24 REMARK 500 1 THR B 242 -67.95 73.88 REMARK 500 2 THR A 56 -71.57 -135.34 REMARK 500 2 THR A 242 -68.18 73.53 REMARK 500 2 THR B 56 -71.38 -135.50 REMARK 500 2 THR B 242 -68.14 73.63 REMARK 500 3 PRO A 66 33.05 -69.77 REMARK 500 3 THR A 242 -68.19 73.61 REMARK 500 3 PRO B 66 33.01 -69.74 REMARK 500 3 THR B 242 -68.15 73.62 REMARK 500 4 PRO A 66 41.04 -69.83 REMARK 500 4 THR A 242 -74.51 -60.22 REMARK 500 4 PRO B 66 41.02 -69.77 REMARK 500 4 THR B 242 -74.34 -60.30 REMARK 500 5 ASN A 241 98.21 176.75 REMARK 500 5 THR A 242 -43.62 -163.35 REMARK 500 5 ASN B 241 98.13 176.70 REMARK 500 5 THR B 242 -42.99 -163.38 REMARK 500 6 PHE A 57 -43.75 -167.06 REMARK 500 6 PRO A 66 -90.28 -69.73 REMARK 500 6 THR A 242 -68.45 73.08 REMARK 500 6 PHE B 57 -43.61 -167.27 REMARK 500 6 PRO B 66 -90.25 -69.76 REMARK 500 6 THR B 242 -68.62 73.14 REMARK 500 7 PHE A 57 39.19 -159.94 REMARK 500 7 ASN A 241 -68.74 73.29 REMARK 500 7 THR A 242 -55.62 76.19 REMARK 500 7 PHE B 57 39.64 -159.98 REMARK 500 7 ASN B 241 -68.67 73.25 REMARK 500 7 THR B 242 -55.58 76.16 REMARK 500 8 PHE A 57 38.71 -142.87 REMARK 500 8 LEU A 64 -18.28 -49.99 REMARK 500 8 THR A 242 -68.79 73.63 REMARK 500 8 PHE B 57 38.87 -142.80 REMARK 500 8 LEU B 64 -18.32 -49.93 REMARK 500 8 THR B 242 -68.77 73.64 REMARK 500 9 PHE A 57 47.79 -90.67 REMARK 500 9 ASN A 241 87.30 -172.99 REMARK 500 9 PHE B 57 47.69 -90.67 REMARK 500 9 ASN B 241 87.28 -172.92 REMARK 500 10 ASN A 241 61.19 74.73 REMARK 500 10 ASN B 241 60.93 74.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25710 RELATED DB: BMRB DBREF 2N5E A 55 243 UNP P02647 APOA1_HUMAN 79 267 DBREF 2N5E B 55 243 UNP P02647 APOA1_HUMAN 79 267 SEQADV 2N5E A UNP P02647 PRO 145 DELETION SEQADV 2N5E A UNP P02647 LEU 146 DELETION SEQADV 2N5E A UNP P02647 ARG 147 DELETION SEQADV 2N5E A UNP P02647 ALA 148 DELETION SEQADV 2N5E A UNP P02647 GLU 149 DELETION SEQADV 2N5E A UNP P02647 LEU 150 DELETION SEQADV 2N5E A UNP P02647 GLN 151 DELETION SEQADV 2N5E A UNP P02647 GLU 152 DELETION SEQADV 2N5E A UNP P02647 GLY 153 DELETION SEQADV 2N5E A UNP P02647 ALA 154 DELETION SEQADV 2N5E A UNP P02647 ARG 155 DELETION SEQADV 2N5E A UNP P02647 GLN 156 DELETION SEQADV 2N5E A UNP P02647 LYS 157 DELETION SEQADV 2N5E A UNP P02647 LEU 158 DELETION SEQADV 2N5E A UNP P02647 HIS 159 DELETION SEQADV 2N5E A UNP P02647 GLU 160 DELETION SEQADV 2N5E A UNP P02647 LEU 161 DELETION SEQADV 2N5E A UNP P02647 GLN 162 DELETION SEQADV 2N5E A UNP P02647 GLU 163 DELETION SEQADV 2N5E A UNP P02647 LYS 164 DELETION SEQADV 2N5E A UNP P02647 LEU 165 DELETION SEQADV 2N5E A UNP P02647 SER 166 DELETION SEQADV 2N5E B UNP P02647 PRO 145 DELETION SEQADV 2N5E B UNP P02647 LEU 146 DELETION SEQADV 2N5E B UNP P02647 ARG 147 DELETION SEQADV 2N5E B UNP P02647 ALA 148 DELETION SEQADV 2N5E B UNP P02647 GLU 149 DELETION SEQADV 2N5E B UNP P02647 LEU 150 DELETION SEQADV 2N5E B UNP P02647 GLN 151 DELETION SEQADV 2N5E B UNP P02647 GLU 152 DELETION SEQADV 2N5E B UNP P02647 GLY 153 DELETION SEQADV 2N5E B UNP P02647 ALA 154 DELETION SEQADV 2N5E B UNP P02647 ARG 155 DELETION SEQADV 2N5E B UNP P02647 GLN 156 DELETION SEQADV 2N5E B UNP P02647 LYS 157 DELETION SEQADV 2N5E B UNP P02647 LEU 158 DELETION SEQADV 2N5E B UNP P02647 HIS 159 DELETION SEQADV 2N5E B UNP P02647 GLU 160 DELETION SEQADV 2N5E B UNP P02647 LEU 161 DELETION SEQADV 2N5E B UNP P02647 GLN 162 DELETION SEQADV 2N5E B UNP P02647 GLU 163 DELETION SEQADV 2N5E B UNP P02647 LYS 164 DELETION SEQADV 2N5E B UNP P02647 LEU 165 DELETION SEQADV 2N5E B UNP P02647 SER 166 DELETION SEQRES 1 A 167 SER THR PHE SER LYS LEU ARG GLU GLN LEU GLY PRO VAL SEQRES 2 A 167 THR GLN GLU PHE TRP ASP ASN LEU GLU LYS GLU THR GLU SEQRES 3 A 167 GLY LEU ARG GLN GLU MET SER LYS ASP LEU GLU GLU VAL SEQRES 4 A 167 LYS ALA LYS VAL GLN PRO TYR LEU ASP ASP PHE GLN LYS SEQRES 5 A 167 LYS TRP GLN GLU GLU MET GLU LEU TYR ARG GLN LYS VAL SEQRES 6 A 167 GLU PRO LEU GLY GLU GLU MET ARG ASP ARG ALA ARG ALA SEQRES 7 A 167 HIS VAL ASP ALA LEU ARG THR HIS LEU ALA PRO TYR SER SEQRES 8 A 167 ASP GLU LEU ARG GLN ARG LEU ALA ALA ARG LEU GLU ALA SEQRES 9 A 167 LEU LYS GLU ASN GLY GLY ALA ARG LEU ALA GLU TYR HIS SEQRES 10 A 167 ALA LYS ALA THR GLU HIS LEU SER THR LEU SER GLU LYS SEQRES 11 A 167 ALA LYS PRO ALA LEU GLU ASP LEU ARG GLN GLY LEU LEU SEQRES 12 A 167 PRO VAL LEU GLU SER PHE LYS VAL SER PHE LEU SER ALA SEQRES 13 A 167 LEU GLU GLU TYR THR LYS LYS LEU ASN THR GLN SEQRES 1 B 167 SER THR PHE SER LYS LEU ARG GLU GLN LEU GLY PRO VAL SEQRES 2 B 167 THR GLN GLU PHE TRP ASP ASN LEU GLU LYS GLU THR GLU SEQRES 3 B 167 GLY LEU ARG GLN GLU MET SER LYS ASP LEU GLU GLU VAL SEQRES 4 B 167 LYS ALA LYS VAL GLN PRO TYR LEU ASP ASP PHE GLN LYS SEQRES 5 B 167 LYS TRP GLN GLU GLU MET GLU LEU TYR ARG GLN LYS VAL SEQRES 6 B 167 GLU PRO LEU GLY GLU GLU MET ARG ASP ARG ALA ARG ALA SEQRES 7 B 167 HIS VAL ASP ALA LEU ARG THR HIS LEU ALA PRO TYR SER SEQRES 8 B 167 ASP GLU LEU ARG GLN ARG LEU ALA ALA ARG LEU GLU ALA SEQRES 9 B 167 LEU LYS GLU ASN GLY GLY ALA ARG LEU ALA GLU TYR HIS SEQRES 10 B 167 ALA LYS ALA THR GLU HIS LEU SER THR LEU SER GLU LYS SEQRES 11 B 167 ALA LYS PRO ALA LEU GLU ASP LEU ARG GLN GLY LEU LEU SEQRES 12 B 167 PRO VAL LEU GLU SER PHE LYS VAL SER PHE LEU SER ALA SEQRES 13 B 167 LEU GLU GLU TYR THR LYS LYS LEU ASN THR GLN HELIX 1 1 SER A 58 GLN A 63 1 6 HELIX 2 2 THR A 68 THR A 79 1 12 HELIX 3 3 GLY A 81 VAL A 119 1 39 HELIX 4 4 PRO A 143 LEU A 240 1 98 HELIX 5 5 SER B 58 GLN B 63 1 6 HELIX 6 6 THR B 68 THR B 79 1 12 HELIX 7 7 GLY B 81 VAL B 119 1 39 HELIX 8 8 PRO B 143 LEU B 240 1 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 133 0 0 8 0 0 0 6 0 0 0 26 END