HEADER ANTIMICROBIAL PROTEIN 06-OCT-14 2MVI TITLE STRUCTURE OF THE S-GLYCOSYLATED BACTERIOCIN ASM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN PLANTARICAN ASM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-64 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590 KEYWDS ANTIMICROBIAL PROTEIN, GLYCOPEPTIDE, S-GLYCOSYLATION, O- KEYWDS 2 GLYCOSYLATION, BACTERIOCIN, GLYCOCIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,T.S.LOO,A.KOOLARD,M.L.PATCHETT,G.E.NORRIS REVDAT 2 29-JUL-20 2MVI 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 10-DEC-14 2MVI 0 JRNL AUTH A.K.GORONCY,T.S.LOO,A.KOOLARD,M.L.PATCHETT,G.E.NORRIS JRNL TITL STRUCTURAL CHARACTERIZATION OF THE S-GLYCOSYLATED JRNL TITL 2 BACTERIOCIN ASM1 FROM LACTOBACILLUS PLANTARUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CYANA 3.0 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104096. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PROTEIN, 38% D3 REMARK 210 -ACETONITRILE, 56.8% WATER, 0.2% REMARK 210 D-ACETIC ACID, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HMBC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N-HSQC-TOCSY; 2D 1H-13C- REMARK 210 HSQC-TOCSY; 2D 1H-13C-H2BC; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2011.118.08.55, KUJIRA REMARK 210 0.9843, NMRVIEW, CYANA 3.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 -168.63 -69.82 REMARK 500 1 TRP A 6 -47.55 -153.50 REMARK 500 1 TYR A 7 -167.07 -173.60 REMARK 500 1 ALA A 10 62.29 64.63 REMARK 500 1 ASP A 22 -76.48 -152.15 REMARK 500 1 SER A 26 31.22 -86.14 REMARK 500 1 HIS A 42 39.36 -94.77 REMARK 500 2 PRO A 2 -169.57 -69.73 REMARK 500 2 TRP A 6 -42.24 -153.14 REMARK 500 2 TYR A 7 -167.17 -179.53 REMARK 500 2 ALA A 10 62.92 64.93 REMARK 500 2 MET A 11 -74.45 -66.87 REMARK 500 2 ASP A 22 -76.02 -154.91 REMARK 500 2 SER A 26 32.62 -86.00 REMARK 500 2 SER A 40 -70.40 -92.71 REMARK 500 2 HIS A 42 39.45 -94.91 REMARK 500 3 PRO A 2 -168.80 -69.78 REMARK 500 3 TRP A 6 -52.69 -153.55 REMARK 500 3 TYR A 7 -167.24 -166.50 REMARK 500 3 ALA A 10 63.66 64.35 REMARK 500 3 ASP A 22 -76.04 -152.14 REMARK 500 3 SER A 26 30.62 -86.20 REMARK 500 3 SER A 40 64.04 -105.27 REMARK 500 3 HIS A 42 39.28 -94.89 REMARK 500 4 PRO A 2 -169.47 -69.73 REMARK 500 4 TRP A 6 -43.26 -153.90 REMARK 500 4 TYR A 7 -167.18 -175.75 REMARK 500 4 ALA A 10 62.79 64.78 REMARK 500 4 ASP A 22 -75.86 -155.42 REMARK 500 4 SER A 26 31.67 -85.87 REMARK 500 4 SER A 34 42.13 -104.82 REMARK 500 4 HIS A 42 37.08 -95.02 REMARK 500 5 PRO A 2 -169.34 -69.78 REMARK 500 5 TRP A 6 -41.64 -155.16 REMARK 500 5 TYR A 7 -167.02 -177.03 REMARK 500 5 ALA A 10 62.91 64.57 REMARK 500 5 MET A 11 -71.69 -64.74 REMARK 500 5 ASP A 22 -76.01 -153.94 REMARK 500 5 SER A 26 31.14 -86.15 REMARK 500 5 HIS A 42 37.09 -95.05 REMARK 500 6 PRO A 2 -168.85 -69.79 REMARK 500 6 TRP A 6 -41.68 -157.13 REMARK 500 6 TYR A 7 -167.62 -178.25 REMARK 500 6 ALA A 10 62.98 65.00 REMARK 500 6 MET A 11 -71.03 -52.56 REMARK 500 6 ASP A 22 -75.37 -155.94 REMARK 500 6 HIS A 42 39.40 -94.84 REMARK 500 7 PRO A 2 -169.13 -69.80 REMARK 500 7 TRP A 6 -47.06 -153.99 REMARK 500 7 TYR A 7 -166.78 -171.59 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 18 GLY A 19 1 -139.94 REMARK 500 SER A 18 GLY A 19 2 -139.92 REMARK 500 SER A 18 GLY A 19 3 -139.97 REMARK 500 SER A 18 GLY A 19 4 -139.66 REMARK 500 SER A 18 GLY A 19 5 -139.95 REMARK 500 SER A 18 GLY A 19 6 -139.91 REMARK 500 SER A 18 GLY A 19 7 -139.64 REMARK 500 SER A 18 GLY A 19 8 -139.85 REMARK 500 SER A 18 GLY A 19 9 -139.95 REMARK 500 SER A 18 GLY A 19 10 -139.91 REMARK 500 SER A 18 GLY A 19 11 -139.99 REMARK 500 SER A 18 GLY A 19 12 -139.89 REMARK 500 SER A 18 GLY A 19 13 -139.91 REMARK 500 SER A 18 GLY A 19 14 -139.98 REMARK 500 SER A 18 GLY A 19 15 -139.54 REMARK 500 SER A 18 GLY A 19 16 -139.82 REMARK 500 SER A 18 GLY A 19 17 -139.78 REMARK 500 SER A 18 GLY A 19 18 -140.00 REMARK 500 SER A 18 GLY A 19 19 -139.98 REMARK 500 SER A 18 GLY A 19 20 -139.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 SER A 18 20.79 REMARK 500 2 SER A 18 20.85 REMARK 500 3 SER A 18 20.78 REMARK 500 4 SER A 18 21.47 REMARK 500 5 SER A 18 20.92 REMARK 500 6 SER A 18 20.80 REMARK 500 7 SER A 18 21.44 REMARK 500 8 SER A 18 20.95 REMARK 500 9 SER A 18 20.77 REMARK 500 10 SER A 18 20.90 REMARK 500 11 SER A 18 20.70 REMARK 500 12 SER A 18 20.91 REMARK 500 13 SER A 18 20.83 REMARK 500 14 SER A 18 20.63 REMARK 500 15 SER A 18 21.64 REMARK 500 16 SER A 18 21.04 REMARK 500 17 SER A 18 21.08 REMARK 500 18 SER A 18 20.58 REMARK 500 19 SER A 18 20.70 REMARK 500 20 SER A 18 20.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25269 RELATED DB: BMRB DBREF 2MVI A 1 43 UNP C7G1H4 PASM1_LACPN 22 64 SEQRES 1 A 43 LYS PRO ALA TRP CYS TRP TYR THR LEU ALA MET CYS GLY SEQRES 2 A 43 ALA GLY TYR ASP SER GLY THR CYS ASP TYR MET TYR SER SEQRES 3 A 43 HIS CYS PHE GLY VAL LYS HIS SER SER GLY GLY GLY GLY SEQRES 4 A 43 SER TYR HIS CYS MODRES 2MVI SER A 18 SER GLYCOSYLATION SITE HET NAG A 101 28 HET NAG A 102 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 1 ASP A 22 SER A 26 5 5 SSBOND 1 CYS A 5 CYS A 28 1555 1555 2.08 SSBOND 2 CYS A 12 CYS A 21 1555 1555 1.99 LINK OG SER A 18 C1 NAG A 101 1555 1555 1.40 LINK SG CYS A 43 C1 NAG A 102 1555 1555 1.99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 208 0 2 1 0 0 0 6 0 0 0 4 END