HEADER TRANSLATION REGULATOR 07-FEB-14 2MKJ TITLE SOLUTION STRUCTURE OF TANDEM RRM DOMAINS OF CYTOPLASMIC TITLE 2 POLYADENYLATION ELEMENT BINDING PROTEIN 4 (CPEB4) IN FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 53-254; COMPND 5 SYNONYM: CPE-BP4, CPE-BINDING PROTEIN 4, HCPEB-4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPEB4, KIAA1673; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS CPEB4, RNA RECOGNITION MOTIF (RRM), CYTOPLASMIC POLYADENYLATION, KEYWDS 2 TRANSLATIONAL REGULATION, TRANSLATION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.AFROZ,L.SKRISOVSKA,E.BELLOC,J.G.BOIXET,R.MENDEZ,F.H.-T.ALLAIN REVDAT 2 27-APR-16 2MKJ 1 DBREF SEQRES REVDAT 1 23-JUL-14 2MKJ 0 JRNL AUTH T.AFROZ,L.SKRISOVSKA,E.BELLOC,J.GUILLEN-BOIXET,R.MENDEZ, JRNL AUTH 2 F.H.-T.ALLAIN JRNL TITL A FLY TRAP MECHANISM PROVIDES SEQUENCE-SPECIFIC RNA JRNL TITL 2 RECOGNITION BY CPEB PROTEINS JRNL REF GENES DEV. V. 28 1498 2014 JRNL REFN ISSN 0890-9369 JRNL PMID 24990967 JRNL DOI 10.1101/GAD.241133.114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-14. REMARK 100 THE RCSB ID CODE IS RCSB103724. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4-0.6 MM [U-100% 13C; U-100% REMARK 210 15N] CPEB4RRM12-1, 100 MM SODIUM REMARK 210 CHLORIDE-2, 50 MM SODIUM REMARK 210 PHOSPHATE-3, 1 MM DTT-4, 90% H2O/ REMARK 210 10% D2O; 0.4-0.6 MM [U-100% 13C; REMARK 210 U-100% 15N; U-80% 2H] CPEB4RRM12- REMARK 210 5, 100 MM SODIUM CHLORIDE-6, 50 REMARK 210 MM SODIUM PHOSPHATE-7, 1 MM DTT- REMARK 210 8, 90% H2O/10% D2O; 0.4-0.6 MM [U REMARK 210 -100% 15N] CPEB4RRM12-9, 100 MM REMARK 210 SODIUM CHLORIDE-10, 50 MM SODIUM REMARK 210 PHOSPHATE-11, 1 MM DTT-12, 90% REMARK 210 H2O/10% D2O; 0.4-0.6 MM [U-100% REMARK 210 15N] CPEB4RRM12-13, 100 MM SODIUM REMARK 210 CHLORIDE-14, 50 MM SODIUM REMARK 210 PHOSPHATE-15, 1 MM DTT-16, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D TROSY; 2D 1H- REMARK 210 13C HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H TOCSY; 2D 1H- REMARK 210 1H NOESY; 3D CBCA(CO)NH; 3D REMARK 210 TRHNCACB; 3D TRHN(CO)CA; 3D REMARK 210 TRHNCO; 3D TRHCACO; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 55 -32.64 -151.84 REMARK 500 1 ARG A 87 -17.22 60.65 REMARK 500 1 LYS A 98 12.19 -156.20 REMARK 500 1 LYS A 102 -54.24 -151.11 REMARK 500 1 CYS A 138 39.70 -90.77 REMARK 500 1 SER A 140 109.55 -54.17 REMARK 500 1 SER A 141 -44.88 -167.25 REMARK 500 1 PRO A 142 -145.75 -75.08 REMARK 500 1 THR A 143 9.95 -66.11 REMARK 500 1 ASP A 146 12.57 54.20 REMARK 500 1 SER A 159 -3.18 -50.17 REMARK 500 1 MET A 163 -30.29 -134.87 REMARK 500 1 ALA A 186 13.24 -69.85 REMARK 500 1 TYR A 197 42.28 -140.91 REMARK 500 1 ALA A 217 -165.06 -55.95 REMARK 500 1 SER A 223 26.00 -148.92 REMARK 500 1 ASP A 245 -32.27 -131.51 REMARK 500 2 ARG A 59 172.18 60.56 REMARK 500 2 PRO A 73 155.71 -49.82 REMARK 500 2 ARG A 87 -1.81 -141.84 REMARK 500 2 PRO A 90 10.31 -64.95 REMARK 500 2 LYS A 98 11.87 -144.48 REMARK 500 2 LYS A 108 13.16 51.91 REMARK 500 2 PRO A 142 -5.05 -54.85 REMARK 500 2 ILE A 144 -25.47 -143.28 REMARK 500 2 LYS A 147 161.36 62.04 REMARK 500 2 LEU A 156 6.88 -69.73 REMARK 500 2 SER A 159 -18.26 -43.82 REMARK 500 2 MET A 163 -0.19 -140.02 REMARK 500 2 ASP A 164 169.62 59.54 REMARK 500 2 ARG A 185 46.80 -93.82 REMARK 500 2 LEU A 196 -72.88 -103.77 REMARK 500 2 CYS A 201 -50.93 -153.37 REMARK 500 2 ALA A 217 176.48 59.39 REMARK 500 2 PHE A 222 28.35 -158.90 REMARK 500 2 ASN A 224 -3.53 -147.51 REMARK 500 2 GLN A 238 -77.76 -84.20 REMARK 500 2 LEU A 239 163.81 59.62 REMARK 500 2 ARG A 247 117.60 56.01 REMARK 500 3 ARG A 59 18.49 56.03 REMARK 500 3 PHE A 85 63.90 -106.29 REMARK 500 3 ARG A 86 1.55 -68.93 REMARK 500 3 SER A 103 165.96 56.39 REMARK 500 3 TYR A 104 15.12 -142.64 REMARK 500 3 LYS A 108 18.54 -155.29 REMARK 500 3 SER A 141 -45.95 -158.02 REMARK 500 3 ASP A 146 -92.82 -151.87 REMARK 500 3 ASN A 155 56.50 -91.34 REMARK 500 3 PRO A 181 176.87 -57.03 REMARK 500 3 ALA A 186 8.96 -68.40 REMARK 500 REMARK 500 THIS ENTRY HAS 371 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 5 LEU A 184 24.0 L L OUTSIDE RANGE REMARK 500 17 ASP A 206 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19777 RELATED DB: BMRB REMARK 900 RELATED ID: 2MKE RELATED DB: PDB REMARK 900 RELATED ID: 2MKH RELATED DB: PDB REMARK 900 RELATED ID: 2MKI RELATED DB: PDB REMARK 900 RELATED ID: 2MKK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS PROTEIN SEQUENCE IS ISOFORM 3 OF CPEB4_HUMAN. DBREF 2MKJ A 53 255 UNP Q17RY0 CPEB4_HUMAN 53 255 SEQRES 1 A 203 SER HIS GLN ASN GLY GLU ARG VAL GLU ARG TYR SER ARG SEQRES 2 A 203 LYS VAL PHE VAL GLY GLY LEU PRO PRO ASP ILE ASP GLU SEQRES 3 A 203 ASP GLU ILE THR ALA SER PHE ARG ARG PHE GLY PRO LEU SEQRES 4 A 203 ILE VAL ASP TRP PRO HIS LYS ALA GLU SER LYS SER TYR SEQRES 5 A 203 PHE PRO PRO LYS GLY TYR ALA PHE LEU LEU PHE GLN ASP SEQRES 6 A 203 GLU SER SER VAL GLN ALA LEU ILE ASP ALA CYS ILE GLU SEQRES 7 A 203 GLU ASP GLY LYS LEU TYR LEU CYS VAL SER SER PRO THR SEQRES 8 A 203 ILE LYS ASP LYS PRO VAL GLN ILE ARG PRO TRP ASN LEU SEQRES 9 A 203 SER ASP SER ASP PHE VAL MET ASP GLY SER GLN PRO LEU SEQRES 10 A 203 ASP PRO ARG LYS THR ILE PHE VAL GLY GLY VAL PRO ARG SEQRES 11 A 203 PRO LEU ARG ALA VAL GLU LEU ALA MET ILE MET ASP ARG SEQRES 12 A 203 LEU TYR GLY GLY VAL CYS TYR ALA GLY ILE ASP THR ASP SEQRES 13 A 203 PRO GLU LEU LYS TYR PRO LYS GLY ALA GLY ARG VAL ALA SEQRES 14 A 203 PHE SER ASN GLN GLN SER TYR ILE ALA ALA ILE SER ALA SEQRES 15 A 203 ARG PHE VAL GLN LEU GLN HIS GLY GLU ILE ASP LYS ARG SEQRES 16 A 203 VAL GLU VAL LYS PRO TYR VAL LEU HELIX 1 1 ASP A 77 PHE A 85 1 9 HELIX 2 2 SER A 119 ALA A 127 1 9 HELIX 3 3 ALA A 186 TYR A 197 1 12 HELIX 4 4 GLN A 225 SER A 233 1 9 SHEET 1 A 6 LEU A 91 ASP A 94 0 SHEET 2 A 6 ALA A 111 PHE A 115 -1 O LEU A 114 N ILE A 92 SHEET 3 A 6 SER A 64 VAL A 69 -1 N VAL A 69 O ALA A 111 SHEET 4 A 6 VAL A 149 TRP A 154 -1 O TRP A 154 N SER A 64 SHEET 5 A 6 LEU A 135 LEU A 137 -1 N LEU A 135 O ILE A 151 SHEET 6 A 6 ILE A 129 GLU A 130 -1 N ILE A 129 O TYR A 136 SHEET 1 B 5 ASP A 160 VAL A 162 0 SHEET 2 B 5 TYR A 202 ASP A 208 -1 O ALA A 203 N PHE A 161 SHEET 3 B 5 TYR A 213 ALA A 221 -1 O ALA A 217 N ASP A 206 SHEET 4 B 5 THR A 174 GLY A 178 -1 N ILE A 175 O VAL A 220 SHEET 5 B 5 GLU A 249 PRO A 252 -1 O LYS A 251 N PHE A 176 SHEET 1 C 2 GLN A 238 HIS A 241 0 SHEET 2 C 2 ILE A 244 LYS A 246 -1 O ASP A 245 N LEU A 239 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 196 0 0 4 13 0 0 6 0 0 0 16 END