HEADER CARBOHYDRATE 22-JAN-14 2MK1 TITLE SOLUTION STRUCTURE OF LACTODIFUCOTETRAOSE (LDFT) BETA ANOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-L-FUCOPYRANOSE-(1-2)-BETA-D-GALACTOPYRANOSE-(1-4)- COMPND 3 [ALPHA-L-FUCOPYRANOSE-(1-3)]BETA-D-GLUCOPYRANOSE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS CARBOHYDRATE, GLYCOEPITOPE, OLIGOSACCHARIDE, 1, 3-FUCOSYLATION, 2- KEYWDS 2 FUCOSYLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SCHUBERT,F.H.-T.ALLAIN REVDAT 3 27-JAN-21 2MK1 1 JRNL HETSYN REVDAT 2 29-JUL-20 2MK1 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 ATOM REVDAT 1 04-FEB-15 2MK1 0 JRNL AUTH T.AESCHBACHER,M.ZIERKE,M.SMIESKO,M.COLLOT,J.M.MALLET, JRNL AUTH 2 B.ERNST,F.H.ALLAIN,M.SCHUBERT JRNL TITL A SECONDARY STRUCTURAL ELEMENT IN A WIDE RANGE OF JRNL TITL 2 FUCOSYLATED GLYCOEPITOPES. JRNL REF CHEMISTRY V. 23 11598 2017 JRNL REFN ISSN 0947-6539 JRNL PMID 28654715 JRNL DOI 10.1002/CHEM.201701866 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: GLYCAM FORCE FIELD AND IMPLICIT SOLVENT REMARK 4 REMARK 4 2MK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103706. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.2MM SUGAR (4-MER)-1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19748 RELATED DB: BMRB REMARK 900 RELATED ID: 21031 RELATED DB: BMRB REMARK 900 DESCRIBED IN SAME MANUSCRIPT REMARK 900 RELATED ID: 21032 RELATED DB: BMRB REMARK 900 DESCRIBED IN SAME MANUSCRIPT REMARK 900 RELATED ID: 21034 RELATED DB: BMRB REMARK 900 DESCRIBED IN SAME MANUSCRIPT REMARK 900 RELATED ID: 21053 RELATED DB: BMRB REMARK 900 RELATED ID: 21054 RELATED DB: BMRB HET BGC A 1 22 HET GAL A 2 21 HET FUC A 3 21 HET FUC A 4 21 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 1 BGC C6 H12 O6 FORMUL 1 GAL C6 H12 O6 FORMUL 1 FUC 2(C6 H12 O5) LINK O4 BGC A 1 C1 GAL A 2 1555 1555 1.47 LINK O3 BGC A 1 C1 FUC A 4 1555 1555 1.47 LINK O2 GAL A 2 C1 FUC A 3 1555 1555 1.47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 78 0 4 0 0 0 0 6 0 0 0 0 END