HEADER DNA 20-AUG-13 2MCI TITLE NMR STRUCTURE OF DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA_(5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY KEYWDS DNA, NUCLEIC ACID, DNA DUPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.BRZEZINSKA,Z.GDANIEC,L.POPENDA,W.T.MARKIEWICZ REVDAT 1 22-JAN-14 2MCI 0 JRNL AUTH J.BRZEZINSKA,Z.GDANIEC,L.POPENDA,W.T.MARKIEWICZ JRNL TITL POLYAMINOOLIGONUCLEOTIDE: NMR STRUCTURE OF DUPLEX DNA JRNL TITL 2 CONTAINING A NUCLEOSIDE WITH SPERMINE RESIDUE, JRNL TITL 3 N-[4,9,13-TRIAZATRIDECAN-1-YL]-2'-DEOXYCYTIDINE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1840 1163 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 24361616 JRNL DOI 10.1016/J.BBAGEN.2013.12.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH V2.22 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB103474. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 283 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 60; 60 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM DNA (5'-D(*GP*TP*CP*GP* REMARK 210 GP*CP*TP*G)-3'), 0.5 MM DNA (5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'), REMARK 210 100 % [U-100% 2H] D2O, 50 MM SODIUM CHLORIDE, 10 MM SODIUM REMARK 210 PHOSPHATE, 0.1 MM EDTA, 100% D2O; 0.5 MM DNA (5'-D(*GP*TP*CP*GP* REMARK 210 GP*CP*TP*G)-3'), 0.5 MM DNA (5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'), REMARK 210 10 % [U-100% 2H] D2O, 90 % H2O, 50 MM SODIUM CHLORIDE, 10 MM REMARK 210 SODIUM PHOSPHATE, 0.1 MM EDTA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H COSY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-13C HSQC; REMARK 210 2D 1H-31P HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH V2.22, TOPSPIN V2.0, REMARK 210 FELIX V2002 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MCJ RELATED DB: PDB REMARK 900 RELATED ID: 19440 RELATED DB: BMRB DBREF 2MCI A 1 8 PDB 2MCI 2MCI 1 8 DBREF 2MCI B 1 8 PDB 2MCI 2MCI 1 8 SEQRES 1 A 8 DG DT DC DG DG DC DT DG SEQRES 1 B 8 DC DA DG DC DC DG DA DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 76 0 0 0 0 0 0 6 0 0 0 2 END