HEADER ANTITUMOR PROTEIN 09-APR-13 2M6T TITLE NMR SOLUTION STRUCTURE ENSEMBLE OF 3-4D MUTANT DOMAIN 11 IGF2R COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN-LIKE GROWTH FACTOR 2 RECEPTOR VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET26A KEYWDS ANTITUMOR, DIRECTED EVOLUTION AND HIGH AFFINITY, ANTITUMOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.STRICKLAND,C.WILLIAMS,E.RICHARDS,L.MINNALL,M.P.CRUMP,S.FRAGO, AUTHOR 2 J.HUGHES,L.GARNER,H.HOPPE,D.REZGUI,O.J.ZACCHEO,S.N.PRINCE, AUTHOR 3 A.B.HASSAN,S.WHITTAKER REVDAT 4 01-JUN-16 2M6T 1 JRNL REVDAT 3 18-MAY-16 2M6T 1 JRNL REVDAT 2 04-MAY-16 2M6T 1 JRNL REVDAT 1 15-OCT-14 2M6T 0 JRNL AUTH S.FRAGO,R.D.NICHOLLS,M.STRICKLAND,J.HUGHES,C.WILLIAMS, JRNL AUTH 2 L.GARNER,M.SURAKHY,R.MACLEAN,D.REZGUI,S.N.PRINCE, JRNL AUTH 3 O.J.ZACCHEO,D.EBNER,S.SANEGRE,S.YU,F.M.BUFFA,M.P.CRUMP, JRNL AUTH 4 A.B.HASSAN JRNL TITL FUNCTIONAL EVOLUTION OF IGF2:IGF2R DOMAIN 11 BINDING JRNL TITL 2 GENERATES NOVEL STRUCTURAL INTERACTIONS AND A SPECIFIC IGF2 JRNL TITL 3 ANTAGONIST. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E2766 2016 JRNL REFN ISSN 0027-8424 JRNL PMID 27140600 JRNL DOI 10.1073/PNAS.1513023113 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, CING ICING REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), DORELEIJERS REMARK 3 (CING) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB103281. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 298 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-95% 13C; U-95% 15N] REMARK 210 DOMAIN 11, 7 % [U-2H] D2O, 93 % REMARK 210 H2O, 100 UM SODIUM AZIDE, 1 MM REMARK 210 EDTA, 10 MM SODIUM ACETATE, 93% REMARK 210 H2O/7% D2O; 1 MM [U-95% 15N] REMARK 210 DOMAIN 11, 7 % [U-2H] D2O, 93 % REMARK 210 H2O, 100 UM SODIUM AZIDE, 1 MM REMARK 210 EDTA, 10 MM SODIUM ACETATE, 93% REMARK 210 H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-15N TOCSY; 3D 1H REMARK 210 -13C NOESY ALIPHATIC; REMARK 210 HETERONUCLEAR NOE RATIO; T1 REMARK 210 EXPERIMENTS; T2 EXPERIMENTS; 3D REMARK 210 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2, NMRPIPE, NMRDRAW, REMARK 210 RELAX 1.3.9, SPARKY 2.6, VNMRJ REMARK 210 0.4, CCPN_ANALYSIS 2.1, TALOS REMARK 210 TALOS+ REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A1510 37.60 -146.63 REMARK 500 1 HIS A1513 77.04 -112.67 REMARK 500 1 ALA A1543 84.08 -66.94 REMARK 500 1 LYS A1544 -28.32 174.07 REMARK 500 1 CYS A1553 81.68 64.85 REMARK 500 1 PRO A1561 104.16 -47.54 REMARK 500 1 ASP A1594 80.72 57.60 REMARK 500 1 GLU A1617 40.26 -88.24 REMARK 500 1 ASN A1622 37.55 -83.53 REMARK 500 2 ASN A1511 45.97 72.99 REMARK 500 2 CYS A1516 62.06 62.55 REMARK 500 2 ALA A1543 49.69 -83.62 REMARK 500 2 CYS A1553 94.92 72.33 REMARK 500 2 ALA A1577 86.14 -67.48 REMARK 500 2 LYS A1601 101.76 -160.04 REMARK 500 2 ALA A1618 175.13 66.19 REMARK 500 2 CYS A1634 63.84 63.67 REMARK 500 3 ASN A1511 38.93 -162.20 REMARK 500 3 HIS A1513 64.22 -159.92 REMARK 500 3 ASP A1515 44.27 -107.21 REMARK 500 3 CYS A1553 81.76 71.92 REMARK 500 3 PRO A1561 99.73 -55.10 REMARK 500 3 LYS A1601 -62.72 73.10 REMARK 500 3 SER A1605 123.78 -177.41 REMARK 500 3 GLU A1617 42.05 -100.12 REMARK 500 3 ASN A1622 30.15 -84.36 REMARK 500 4 LYS A1509 -48.01 -170.03 REMARK 500 4 GLU A1512 35.31 -149.84 REMARK 500 4 HIS A1513 67.44 -116.74 REMARK 500 4 ASP A1515 46.83 -82.77 REMARK 500 4 CYS A1553 76.79 68.41 REMARK 500 4 PRO A1561 103.21 -59.17 REMARK 500 4 ASP A1594 87.75 65.60 REMARK 500 4 ALA A1618 -71.56 68.18 REMARK 500 4 ASN A1622 46.30 -88.04 REMARK 500 5 ASN A1511 43.88 -105.63 REMARK 500 5 ASP A1514 64.77 63.39 REMARK 500 5 ASP A1515 -67.80 -128.42 REMARK 500 5 LYS A1544 -46.46 68.06 REMARK 500 5 PRO A1561 100.06 -55.83 REMARK 500 5 ASP A1594 93.37 65.33 REMARK 500 5 GLU A1617 41.19 -88.48 REMARK 500 6 ASP A1514 25.97 -149.50 REMARK 500 6 ALA A1543 -90.03 65.15 REMARK 500 6 LYS A1544 -62.64 -145.35 REMARK 500 6 CYS A1553 68.98 63.48 REMARK 500 6 PRO A1561 107.07 -51.21 REMARK 500 6 ALA A1577 86.32 -62.54 REMARK 500 6 ASP A1594 87.46 62.51 REMARK 500 6 PRO A1599 4.33 -69.47 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A1580 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CNJ RELATED DB: PDB REMARK 900 RELATED ID: 2M68 RELATED DB: PDB REMARK 900 RELATED ID: 19153 RELATED DB: BMRB REMARK 900 RELATED ID: 2M6O RELATED DB: PDB DBREF 2M6T A 1508 1649 UNP Q59EZ3 Q59EZ3_HUMAN 1431 1572 SEQADV 2M6T ALA A 1543 UNP Q59EZ3 SER 1466 ENGINEERED MUTATION SEQADV 2M6T LYS A 1544 UNP Q59EZ3 GLU 1467 ENGINEERED MUTATION SEQADV 2M6T GLY A 1545 UNP Q59EZ3 LYS 1468 ENGINEERED MUTATION SEQADV 2M6T TRP A 1546 UNP Q59EZ3 GLY 1469 ENGINEERED MUTATION SEQADV 2M6T GLY A 1547 UNP Q59EZ3 LEU 1470 ENGINEERED MUTATION SEQADV 2M6T LEU A 1648 UNP Q59EZ3 GLN 1571 ENGINEERED MUTATION SEQRES 1 A 142 MET LYS SER ASN GLU HIS ASP ASP CYS GLN VAL THR ASN SEQRES 2 A 142 PRO SER THR GLY HIS LEU PHE ASP LEU SER SER LEU SER SEQRES 3 A 142 GLY ARG ALA GLY PHE THR ALA ALA TYR ALA LYS GLY TRP SEQRES 4 A 142 GLY VAL TYR MET SER ILE CYS GLY GLU ASN GLU ASN CYS SEQRES 5 A 142 PRO PRO GLY VAL GLY ALA CYS PHE GLY GLN THR ARG ILE SEQRES 6 A 142 SER VAL GLY LYS ALA ASN LYS ARG LEU ARG TYR VAL ASP SEQRES 7 A 142 GLN VAL LEU GLN LEU VAL TYR LYS ASP GLY SER PRO CYS SEQRES 8 A 142 PRO SER LYS SER GLY LEU SER TYR LYS SER VAL ILE SER SEQRES 9 A 142 PHE VAL CYS ARG PRO GLU ALA GLY PRO THR ASN ARG PRO SEQRES 10 A 142 MET LEU ILE SER LEU ASP LYS GLN THR CYS THR LEU PHE SEQRES 11 A 142 PHE SER TRP HIS THR PRO LEU ALA CYS GLU LEU ALA HELIX 1 1 SER A 1530 SER A 1533 5 4 HELIX 2 2 PRO A 1643 CYS A 1646 5 4 SHEET 1 A 2 GLN A1517 THR A1519 0 SHEET 2 A 2 LEU A1526 ASP A1528 -1 O PHE A1527 N VAL A1518 SHEET 1 B 4 PHE A1538 ALA A1541 0 SHEET 2 B 4 GLY A1547 MET A1550 -1 O MET A1550 N PHE A1538 SHEET 3 B 4 ALA A1565 PHE A1567 -1 O CYS A1566 N TYR A1549 SHEET 4 B 4 ILE A1572 SER A1573 -1 O ILE A1572 N PHE A1567 SHEET 1 C 5 LEU A1581 VAL A1584 0 SHEET 2 C 5 VAL A1587 TYR A1592 -1 O GLN A1589 N ARG A1582 SHEET 3 C 5 LYS A1607 CYS A1614 -1 O PHE A1612 N LEU A1588 SHEET 4 C 5 THR A1635 THR A1642 1 O PHE A1638 N SER A1611 SHEET 5 C 5 PRO A1624 ASP A1630 -1 N MET A1625 O SER A1639 SSBOND 1 CYS A 1516 CYS A 1553 1555 1555 2.02 SSBOND 2 CYS A 1559 CYS A 1566 1555 1555 2.02 SSBOND 3 CYS A 1598 CYS A 1634 1555 1555 2.03 SSBOND 4 CYS A 1614 CYS A 1646 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 176 0 0 2 11 0 0 6 0 0 0 11 END