HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-SEP-12 2LZ0 TITLE NMR STRUCTURE OF THE PROTEIN ZP_02034617.1 FROM BACTEROIDES CAPILLOSUS TITLE 2 ATCC 29799 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 379-478; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES CAPILLOSUS; SOURCE 3 ORGANISM_TAXID: 411467; SOURCE 4 ATCC: 29799; SOURCE 5 GENE: BACCAP_00201; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS LEUCINE RICH REPEAT PROTEIN, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 3 04-MAR-15 2LZ0 1 JRNL TITLE REVDAT 2 12-JUN-13 2LZ0 1 AUTHOR REVDAT 1 10-OCT-12 2LZ0 0 JRNL AUTH S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE PROTEIN ZP_02034617.1 FROM BACTEROIDES JRNL TITL 2 CAPILLOSUS ATCC 29799 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB103004. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 4.5 MM SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 4D APSY-HACANH; REMARK 210 5D APSY-HACACONH; 5D APSY- REMARK 210 CBCACONH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, XEASY, CARA, UNIO, REMARK 210 CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 LEU A 45 CB - CG - CD2 ANGL. DEV. = 16.4 DEGREES REMARK 500 5 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 6 LEU A 45 CB - CG - CD2 ANGL. DEV. = 16.6 DEGREES REMARK 500 7 LEU A 45 CB - CG - CD2 ANGL. DEV. = 16.7 DEGREES REMARK 500 12 LEU A 45 CB - CG - CD2 ANGL. DEV. = 16.2 DEGREES REMARK 500 13 ASP A 12 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 13 LEU A 45 CB - CG - CD2 ANGL. DEV. = 15.9 DEGREES REMARK 500 15 LEU A 45 CB - CG - CD2 ANGL. DEV. = 14.5 DEGREES REMARK 500 17 LEU A 45 CB - CG - CD2 ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 11 17.72 58.51 REMARK 500 1 PHE A 16 -49.45 -147.16 REMARK 500 1 ILE A 31 63.13 -117.17 REMARK 500 1 TYR A 35 -165.24 -72.22 REMARK 500 1 THR A 51 30.09 -88.90 REMARK 500 1 ASP A 62 -32.64 174.85 REMARK 500 1 ASP A 69 101.22 -162.97 REMARK 500 1 PHE A 87 -68.42 -140.92 REMARK 500 2 MET A 11 -11.33 53.73 REMARK 500 2 LEU A 15 75.92 -110.70 REMARK 500 2 PHE A 16 -55.47 -130.51 REMARK 500 2 ALA A 17 30.52 -73.68 REMARK 500 2 THR A 20 6.48 -65.66 REMARK 500 2 SER A 40 94.16 -63.59 REMARK 500 2 PHE A 87 -64.34 -137.24 REMARK 500 3 SER A 14 -44.49 -150.01 REMARK 500 3 LEU A 15 10.48 -63.85 REMARK 500 3 ALA A 17 79.74 -103.02 REMARK 500 3 THR A 20 31.06 -66.35 REMARK 500 3 VAL A 21 -7.75 -145.88 REMARK 500 3 ASN A 30 74.29 47.80 REMARK 500 3 ILE A 31 33.16 -143.00 REMARK 500 3 TYR A 35 -164.61 -70.44 REMARK 500 3 ASP A 36 -158.50 -59.31 REMARK 500 3 CYS A 42 73.79 -68.39 REMARK 500 3 THR A 43 2.07 -63.70 REMARK 500 3 ALA A 44 39.88 -148.91 REMARK 500 3 ASP A 62 -57.49 -122.04 REMARK 500 3 ALA A 92 3.68 -68.10 REMARK 500 4 SER A 2 85.29 -152.20 REMARK 500 4 HIS A 3 169.92 66.31 REMARK 500 4 PRO A 7 91.02 -69.18 REMARK 500 4 MET A 11 -60.91 58.82 REMARK 500 4 SER A 14 54.13 -173.21 REMARK 500 4 LEU A 15 61.51 -158.15 REMARK 500 4 PHE A 16 -44.47 -131.44 REMARK 500 4 THR A 20 9.85 -52.00 REMARK 500 4 VAL A 21 19.80 -140.87 REMARK 500 4 ILE A 31 55.31 -144.93 REMARK 500 4 THR A 51 45.10 -82.27 REMARK 500 4 ALA A 57 9.82 -69.53 REMARK 500 4 ASP A 69 104.58 -160.91 REMARK 500 5 HIS A 3 81.69 44.23 REMARK 500 5 MET A 11 -35.58 -140.18 REMARK 500 5 SER A 14 -52.65 -161.92 REMARK 500 5 LEU A 15 8.41 -64.36 REMARK 500 5 THR A 20 19.61 -65.57 REMARK 500 5 TYR A 35 -166.62 -75.69 REMARK 500 5 SER A 40 109.78 -57.16 REMARK 500 5 ALA A 60 -17.37 174.72 REMARK 500 REMARK 500 THIS ENTRY HAS 168 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 5 GLU A 6 4 148.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 23 0.11 SIDE CHAIN REMARK 500 3 ARG A 81 0.12 SIDE CHAIN REMARK 500 3 TYR A 82 0.12 SIDE CHAIN REMARK 500 4 ARG A 23 0.09 SIDE CHAIN REMARK 500 4 ARG A 65 0.12 SIDE CHAIN REMARK 500 5 ARG A 65 0.13 SIDE CHAIN REMARK 500 6 ARG A 81 0.09 SIDE CHAIN REMARK 500 7 ARG A 23 0.11 SIDE CHAIN REMARK 500 8 ARG A 23 0.10 SIDE CHAIN REMARK 500 8 TYR A 35 0.07 SIDE CHAIN REMARK 500 8 ARG A 81 0.17 SIDE CHAIN REMARK 500 8 TYR A 86 0.07 SIDE CHAIN REMARK 500 8 TYR A 91 0.08 SIDE CHAIN REMARK 500 9 TYR A 35 0.10 SIDE CHAIN REMARK 500 9 ARG A 83 0.13 SIDE CHAIN REMARK 500 11 ARG A 23 0.09 SIDE CHAIN REMARK 500 11 ARG A 65 0.08 SIDE CHAIN REMARK 500 11 ARG A 81 0.15 SIDE CHAIN REMARK 500 12 PHE A 16 0.09 SIDE CHAIN REMARK 500 12 ARG A 65 0.18 SIDE CHAIN REMARK 500 13 ARG A 83 0.08 SIDE CHAIN REMARK 500 16 ARG A 65 0.10 SIDE CHAIN REMARK 500 16 TYR A 82 0.08 SIDE CHAIN REMARK 500 17 ARG A 83 0.10 SIDE CHAIN REMARK 500 18 TYR A 82 0.10 SIDE CHAIN REMARK 500 18 TYR A 91 0.08 SIDE CHAIN REMARK 500 19 ARG A 23 0.08 SIDE CHAIN REMARK 500 19 ARG A 83 0.12 SIDE CHAIN REMARK 500 20 ARG A 65 0.15 SIDE CHAIN REMARK 500 20 TYR A 91 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18734 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-424100 RELATED DB: TARGETTRACK DBREF 2LZ0 A 1 100 UNP A6NPT5 A6NPT5_9FIRM 379 478 SEQRES 1 A 100 GLY SER HIS GLU GLY GLU PRO VAL VAL GLY MET ASP LYS SEQRES 2 A 100 SER LEU PHE ALA GLY ASN THR VAL ILE ARG GLU ILE THR SEQRES 3 A 100 VAL GLN PRO ASN ILE GLY LEU LEU TYR ASP GLY MET PHE SEQRES 4 A 100 SER GLY CYS THR ALA LEU GLU LYS LEU ILE LEU THR GLY SEQRES 5 A 100 GLU ASP PRO SER ALA TYR SER ALA GLY ASP GLY LEU ARG SEQRES 6 A 100 ASP GLY ALA ASP PHE LEU ILE CYS VAL PRO GLU GLU ALA SEQRES 7 A 100 LEU ASP ARG TYR ARG ARG ASP TYR PHE TRP GLN THR TYR SEQRES 8 A 100 ALA ALA TRP ILE GLN PRO MET GLU GLN HELIX 1 1 ASP A 54 TYR A 58 5 5 HELIX 2 2 PRO A 75 ARG A 84 1 10 HELIX 3 3 PHE A 87 ALA A 92 5 6 SHEET 1 A 4 ILE A 25 VAL A 27 0 SHEET 2 A 4 LEU A 48 LEU A 50 1 O ILE A 49 N ILE A 25 SHEET 3 A 4 ILE A 72 VAL A 74 1 O CYS A 73 N LEU A 48 SHEET 4 A 4 ILE A 95 PRO A 97 1 O GLN A 96 N ILE A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 229 0 0 3 4 0 0 6 0 0 0 8 END