HEADER ANTIMICROBIAL PROTEIN, DE NOVO PROTEIN 30-AUG-12 2LXO TITLE IDENTIFICATION OF THE STRUCTURAL TRAITS MEDIATING THE ANTIMICROBIAL TITLE 2 ACTIVITY OF A CHIMERIC PEPTIDE OF HBD2 AND HBD3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERIC PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS ANTIMICROBIAL PEPTIDE, DESIGNER PEPTIDE, DE NOVO PROTEIN, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.SPUDY,F.D.SOENNICHSEN,G.H.WAETZIG,J.GROTZINGER,S.JUNG REVDAT 1 14-AUG-13 2LXO 0 JRNL AUTH B.SPUDY,F.D.SONNICHSEN,G.H.WAETZIG,J.GROTZINGER,S.JUNG JRNL TITL IDENTIFICATION OF STRUCTURAL TRAITS THAT INCREASE THE JRNL TITL 2 ANTIMICROBIAL ACTIVITY OF A CHIMERIC PEPTIDE OF HUMAN JRNL TITL 3 BETA-DEFENSINS 2 AND 3. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 427 207 2012 JRNL REFN ISSN 0006-291X JRNL PMID 22995312 JRNL DOI 10.1016/J.BBRC.2012.09.052 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB102961. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.15 MM PROTEIN, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 4 80.45 -169.44 REMARK 500 1 THR A 5 55.07 -110.32 REMARK 500 1 LEU A 6 131.28 -39.44 REMARK 500 1 GLN A 7 -60.31 -120.52 REMARK 500 1 LYS A 8 -80.43 179.13 REMARK 500 1 TYR A 9 -27.27 -39.83 REMARK 500 1 TYR A 10 12.89 -142.82 REMARK 500 1 ARG A 12 141.63 79.61 REMARK 500 1 ARG A 14 -155.52 -153.13 REMARK 500 1 ALA A 16 120.19 -172.51 REMARK 500 1 VAL A 21 -55.67 79.36 REMARK 500 1 PHE A 22 -161.57 -164.72 REMARK 500 1 PRO A 24 -152.10 -75.02 REMARK 500 1 ARG A 26 -14.33 75.73 REMARK 500 1 TYR A 27 -95.84 -41.54 REMARK 500 1 LYS A 28 71.76 166.98 REMARK 500 1 GLN A 29 128.09 -36.61 REMARK 500 1 LEU A 35 120.92 -39.56 REMARK 500 1 LYS A 43 155.54 -42.03 REMARK 500 2 LEU A 6 131.48 -39.52 REMARK 500 2 GLN A 7 -58.72 -120.74 REMARK 500 2 LYS A 8 -81.64 177.44 REMARK 500 2 TYR A 10 13.06 -140.89 REMARK 500 2 CYS A 11 108.28 -41.48 REMARK 500 2 VAL A 13 -99.63 -142.35 REMARK 500 2 ARG A 14 45.98 -100.64 REMARK 500 2 ALA A 16 -143.15 -99.14 REMARK 500 2 VAL A 21 -54.95 79.20 REMARK 500 2 PHE A 22 -161.55 -165.29 REMARK 500 2 PRO A 24 -153.49 -75.08 REMARK 500 2 ARG A 26 -12.85 74.21 REMARK 500 2 TYR A 27 -92.60 -36.72 REMARK 500 2 LYS A 28 72.30 173.77 REMARK 500 2 GLN A 29 103.75 -38.72 REMARK 500 2 LYS A 43 86.02 -168.00 REMARK 500 3 LEU A 6 131.80 163.43 REMARK 500 3 GLN A 7 -81.64 -153.16 REMARK 500 3 LYS A 8 -79.81 175.82 REMARK 500 3 TYR A 10 12.80 -143.02 REMARK 500 3 CYS A 11 136.30 -39.96 REMARK 500 3 ARG A 12 33.10 83.98 REMARK 500 3 VAL A 13 170.49 54.66 REMARK 500 3 ALA A 16 26.62 83.83 REMARK 500 3 VAL A 21 -55.67 78.78 REMARK 500 3 PHE A 22 -156.66 -164.53 REMARK 500 3 PRO A 24 -153.78 -74.99 REMARK 500 3 ARG A 26 -10.06 71.57 REMARK 500 3 TYR A 27 -98.91 -47.92 REMARK 500 3 LYS A 28 104.43 177.80 REMARK 500 3 CYS A 33 54.30 -114.59 REMARK 500 REMARK 500 THIS ENTRY HAS 332 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18684 RELATED DB: BMRB DBREF 2LXO A 1 44 PDB 2LXO 2LXO 1 44 SEQRES 1 A 44 GLY ILE ILE ASN THR LEU GLN LYS TYR TYR CYS ARG VAL SEQRES 2 A 44 ARG GLY ALA ILE CYS HIS PRO VAL PHE CYS PRO ARG ARG SEQRES 3 A 44 TYR LYS GLN ILE GLY THR CYS GLY LEU PRO GLY THR LYS SEQRES 4 A 44 CYS CYS LYS LYS PRO SSBOND 1 CYS A 11 CYS A 40 1555 1555 2.14 SSBOND 2 CYS A 18 CYS A 33 1555 1555 2.16 LINK SG CYS A 23 SG CYS A 41 1555 1555 1.66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 136 0 0 0 0 0 0 6 0 0 0 4 END