HEADER PROTEIN BINDING 19-AUG-12 2LXB TITLE SOLUTION STRUCTURE OF THE SGT2 HOMODIMERIZATION DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING COMPND 3 PROTEIN 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN; COMPND 6 SYNONYM: SGT/UBP, VIRAL PROTEIN U-BINDING PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SGT2, UNF346, YOR007C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NICO21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET33B KEYWDS FOUR-HELIX BUNDLE, PROTEIN-PROTEIN INTERACTION, GET5 BINDING DOMAIN, KEYWDS 2 GET PATHWAY, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.W.CHARTRON,D.G.VANDERVELDE,W.M.CLEMONS JR. REVDAT 3 16-JAN-13 2LXB 1 JRNL REVDAT 2 28-NOV-12 2LXB 1 JRNL REVDAT 1 21-NOV-12 2LXB 0 JRNL AUTH J.W.CHARTRON,D.G.VANDERVELDE,W.M.CLEMONS JRNL TITL STRUCTURES OF THE SGT2/SGTA DIMERIZATION DOMAIN WITH THE JRNL TITL 2 GET5/UBL4A UBL DOMAIN REVEAL AN INTERACTION THAT FORMS A JRNL TITL 3 CONSERVED DYNAMIC INTERFACE. JRNL REF CELL REP V. 2 1620 2012 JRNL REFN ESSN 2211-1247 JRNL PMID 23142665 JRNL DOI 10.1016/J.CELREP.2012.10.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED IN EXPLICIT WATER REMARK 4 REMARK 4 2LXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB102948. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297.5 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-100% 13C; U-100% 15N] REMARK 210 SGT2, 20 MM SODIUM PHOSPHATE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 2 MM [U-100% 15N] SGT2, 20 REMARK 210 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 7 % POLYACRYLAMIDE, REMARK 210 90% H2O/10% D2O; 2 MM [U-100% REMARK 210 15N] SGT2, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D (H)CCH-TOCSY; 3D 1H REMARK 210 -15N TOCSY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 3D REMARK 210 HNCO; 3D C(CO)NH; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, ANALYSIS, NMRPIPE, TALOS+ REMARK 210 , ARIA 2.3, PALES, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 -171.56 73.92 REMARK 500 1 PHE A 60 170.86 67.18 REMARK 500 1 GLN A 63 -94.57 -64.13 REMARK 500 1 HIS A 64 -85.50 69.41 REMARK 500 1 ALA A 66 -51.14 78.18 REMARK 500 1 ALA B 3 -171.20 73.87 REMARK 500 1 PHE B 60 170.29 66.84 REMARK 500 1 GLN B 63 -94.68 -64.21 REMARK 500 1 HIS B 64 -85.67 69.36 REMARK 500 1 ALA B 66 -51.00 77.77 REMARK 500 2 ASP A 1 -25.30 80.12 REMARK 500 2 ALA A 3 -161.27 73.62 REMARK 500 2 HIS A 64 -30.82 -165.74 REMARK 500 2 ALA A 66 36.37 -89.94 REMARK 500 2 ASP B 1 -24.98 79.94 REMARK 500 2 ALA B 3 -161.77 73.65 REMARK 500 2 HIS B 64 -30.99 -165.56 REMARK 500 2 ALA B 66 36.74 -89.94 REMARK 500 3 ASP A 1 -34.03 -155.53 REMARK 500 3 PHE A 60 -34.59 71.99 REMARK 500 3 LYS A 61 93.00 61.42 REMARK 500 3 HIS A 64 -63.09 179.53 REMARK 500 3 ALA A 66 -160.46 -175.83 REMARK 500 3 ILE A 68 96.50 -64.43 REMARK 500 3 ASP B 1 -34.17 -155.41 REMARK 500 3 PHE B 60 -34.28 72.13 REMARK 500 3 LYS B 61 92.95 61.02 REMARK 500 3 HIS B 64 -62.46 179.32 REMARK 500 3 ALA B 66 -160.61 -175.77 REMARK 500 3 ILE B 68 96.45 -64.54 REMARK 500 4 GLN A 63 130.60 67.10 REMARK 500 4 HIS A 64 -53.95 78.98 REMARK 500 4 ALA A 66 178.78 75.70 REMARK 500 4 ILE A 68 141.54 77.09 REMARK 500 4 GLN B 63 130.46 67.15 REMARK 500 4 HIS B 64 -53.62 78.80 REMARK 500 4 ALA B 66 178.55 75.63 REMARK 500 4 ILE B 68 141.60 76.81 REMARK 500 5 PHE A 60 119.37 63.13 REMARK 500 5 HIS A 64 -39.59 -165.27 REMARK 500 5 ALA A 66 -42.12 73.22 REMARK 500 5 PHE B 60 119.09 63.70 REMARK 500 5 HIS B 64 -39.42 -165.26 REMARK 500 5 ALA B 66 -41.85 73.42 REMARK 500 6 ASP A 1 79.83 -179.33 REMARK 500 6 ALA A 3 -175.86 -66.77 REMARK 500 6 GLN A 63 -166.33 -72.22 REMARK 500 6 HIS A 64 132.08 66.81 REMARK 500 6 ALA A 66 -75.93 -170.22 REMARK 500 6 ASP B 1 80.21 -179.71 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GOC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GET5, THE SGT2 BINDING PARTNER REMARK 900 RELATED ID: 2LXA RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GET5, THE SGT2 BINDING PARTNER REMARK 900 RELATED ID: 2LXC RELATED DB: PDB REMARK 900 RELATED ID: 4GOD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN HOMOLOG REMARK 900 RELATED ID: 4GOE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN HOMOLOG REMARK 900 RELATED ID: 4GOF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN HOMOLOG REMARK 900 RELATED ID: 18670 RELATED DB: BMRB DBREF 2LXB A 2 72 UNP Q12118 SGT2_YEAST 2 72 DBREF 2LXB B 2 72 UNP Q12118 SGT2_YEAST 2 72 SEQADV 2LXB SER A -1 UNP Q12118 EXPRESSION TAG SEQADV 2LXB VAL A 0 UNP Q12118 EXPRESSION TAG SEQADV 2LXB ASP A 1 UNP Q12118 EXPRESSION TAG SEQADV 2LXB SER B -1 UNP Q12118 EXPRESSION TAG SEQADV 2LXB VAL B 0 UNP Q12118 EXPRESSION TAG SEQADV 2LXB ASP B 1 UNP Q12118 EXPRESSION TAG SEQRES 1 A 74 SER VAL ASP SER ALA SER LYS GLU GLU ILE ALA ALA LEU SEQRES 2 A 74 ILE VAL ASN TYR PHE SER SER ILE VAL GLU LYS LYS GLU SEQRES 3 A 74 ILE SER GLU ASP GLY ALA ASP SER LEU ASN VAL ALA MET SEQRES 4 A 74 ASP CYS ILE SER GLU ALA PHE GLY PHE GLU ARG GLU ALA SEQRES 5 A 74 VAL SER GLY ILE LEU GLY LYS SER GLU PHE LYS GLY GLN SEQRES 6 A 74 HIS LEU ALA ASP ILE LEU ASN SER ALA SEQRES 1 B 74 SER VAL ASP SER ALA SER LYS GLU GLU ILE ALA ALA LEU SEQRES 2 B 74 ILE VAL ASN TYR PHE SER SER ILE VAL GLU LYS LYS GLU SEQRES 3 B 74 ILE SER GLU ASP GLY ALA ASP SER LEU ASN VAL ALA MET SEQRES 4 B 74 ASP CYS ILE SER GLU ALA PHE GLY PHE GLU ARG GLU ALA SEQRES 5 B 74 VAL SER GLY ILE LEU GLY LYS SER GLU PHE LYS GLY GLN SEQRES 6 B 74 HIS LEU ALA ASP ILE LEU ASN SER ALA HELIX 1 1 SER A 4 LYS A 22 1 19 HELIX 2 2 SER A 26 GLY A 45 1 20 HELIX 3 3 ALA A 50 GLY A 56 1 7 HELIX 4 4 ILE A 68 ALA A 72 5 5 HELIX 5 5 SER B 4 LYS B 22 1 19 HELIX 6 6 SER B 26 GLY B 45 1 20 HELIX 7 7 ALA B 50 GLY B 56 1 7 HELIX 8 8 ILE B 68 ALA B 72 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 163 0 0 8 0 0 0 6 0 0 0 12 END