HEADER ANTIMICROBIAL PROTEIN 25-NOV-11 2LM8 TITLE STRUCTURE, ACTIVITY AND INTERACTIONS OF THE CYSTEINE DELETED ANALOG OF TITLE 2 TACHYPLESIN-1 WITH LIPOPOLYSACCHARIDE MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDT-LPS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.JOSHI,S.BHATTACHARJYA,R.SARAVANAN REVDAT 2 09-MAY-12 2LM8 1 JRNL REVDAT 1 25-APR-12 2LM8 0 JRNL AUTH R.SARAVANAN,H.MOHANRAM,M.JOSHI,P.N.DOMADIA,J.TORRES,C.RUEDL, JRNL AUTH 2 S.BHATTACHARJYA JRNL TITL STRUCTURE, ACTIVITY AND INTERACTIONS OF THE CYSTEINE DELETED JRNL TITL 2 ANALOG OF TACHYPLESIN-1 WITH LIPOPOLYSACCHARIDE MICELLE: JRNL TITL 3 MECHANISTIC INSIGHTS INTO OUTER-MEMBRANE PERMEABILIZATION JRNL TITL 4 AND ENDOTOXIN NEUTRALIZATION. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1818 1613 2012 JRNL REFN ISSN 0006-3002 JRNL PMID 22464970 JRNL DOI 10.1016/J.BBAMEM.2012.03.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB102554. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM CDT-LPS, 0.5 MM CDT-LPS, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN 2.1, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 3 -179.67 -54.21 REMARK 500 2 PHE A 3 -179.72 -54.25 REMARK 500 3 PHE A 3 -179.71 -54.24 REMARK 500 4 PHE A 3 -179.72 -54.30 REMARK 500 5 PHE A 3 -179.67 -54.30 REMARK 500 6 PHE A 3 -179.71 -54.23 REMARK 500 7 PHE A 3 -179.73 -54.23 REMARK 500 8 PHE A 3 -179.71 -54.27 REMARK 500 9 PHE A 3 -179.70 -54.28 REMARK 500 10 PHE A 3 -179.72 -54.23 REMARK 500 11 PHE A 3 -179.68 -54.27 REMARK 500 12 PHE A 3 -179.74 -54.22 REMARK 500 13 PHE A 3 -179.69 -54.27 REMARK 500 14 PHE A 3 -179.69 -54.24 REMARK 500 15 PHE A 3 -179.74 -54.21 REMARK 500 16 PHE A 3 -179.68 -54.19 REMARK 500 17 PHE A 3 -179.70 -54.28 REMARK 500 18 PHE A 3 -179.68 -54.26 REMARK 500 19 PHE A 3 -179.71 -54.22 REMARK 500 20 PHE A 3 -179.74 -54.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18102 RELATED DB: BMRB DBREF 2LM8 A 1 13 PDB 2LM8 2LM8 1 13 SEQRES 1 A 13 LYS TRP PHE ARG VAL TYR ARG GLY ILE TYR ARG ARG ARG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 104 0 0 0 0 0 0 6 0 0 0 1 END