HEADER DE NOVO PROTEIN 26-OCT-11 2LL5 TITLE CYCLO-TC1 TRP-CAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLO-TC1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS TRP-CAGE, MINIPROTEIN, CYCLIC PEPTIDE, UNKNOWN FUNCTION, DE NOVO KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 33 AUTHOR J.C.LIN,M.SCIAN,N.H.ANDERSEN REVDAT 2 15-AUG-12 2LL5 1 JRNL REVDAT 1 18-JUL-12 2LL5 0 JRNL AUTH M.SCIAN,J.C.LIN,I.LE TRONG,G.I.MAKHATADZE,R.E.STENKAMP, JRNL AUTH 2 N.H.ANDERSEN JRNL TITL CRYSTAL AND NMR STRUCTURES OF A TRP-CAGE MINI-PROTEIN JRNL TITL 2 BENCHMARK FOR COMPUTATIONAL FOLD PREDICTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 12521 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22802678 JRNL DOI 10.1073/PNAS.1121421109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB102515. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50. REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0-1.5 MM CYCLO-TC1, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 33 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 33 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 ASP A 1 -69.94 -164.70 REMARK 500 5 PRO A 19 172.49 -56.49 REMARK 500 12 SER A 20 51.39 -110.36 REMARK 500 14 PRO A 19 176.02 -58.79 REMARK 500 16 SER A 20 44.76 -101.82 REMARK 500 19 ASP A 1 -61.44 -176.22 REMARK 500 19 SER A 20 59.19 -99.46 REMARK 500 20 ASP A 1 -60.85 -177.14 REMARK 500 20 SER A 20 48.38 -106.42 REMARK 500 21 PRO A 19 172.69 -58.31 REMARK 500 22 SER A 20 -159.67 47.25 REMARK 500 23 SER A 20 55.29 -99.90 REMARK 500 24 SER A 20 43.97 -104.83 REMARK 500 28 PRO A 19 171.71 -59.49 REMARK 500 31 PRO A 19 156.09 -49.57 REMARK 500 32 PRO A 19 173.72 -58.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18023 RELATED DB: BMRB REMARK 900 RELATED ID: 3UC7 RELATED DB: PDB REMARK 900 RELATED ID: 3UC8 RELATED DB: PDB DBREF 2LL5 A -1 21 PDB 2LL5 2LL5 -1 21 SEQRES 1 A 22 GLY ASP ALA TYR ALA GLN TRP LEU ALA ASP GLY GLY PRO SEQRES 2 A 22 SER SER GLY ARG PRO PRO PRO SER GLY HELIX 1 1 ASP A 1 ASP A 9 1 9 HELIX 2 2 GLY A 10 GLY A 15 5 6 LINK N GLY A -1 C GLY A 21 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 102 0 0 2 0 0 0 6 0 0 0 2 END