HEADER MEMBRANE PROTEIN/METAL BINDING PROTEIN 14-JUN-11 2LE9 TITLE RAGEC2-S100A13 TETRAMERIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 235-327; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN S100-A13; COMPND 9 CHAIN: B, C; COMPND 10 SYNONYM: S100 CALCIUM-BINDING PROTEIN A13; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: PET 28A; SOURCE 6 GENE: AGER, RAGE, RAGEC2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 VARIANT: PGEX-4T; SOURCE 16 GENE: S100A13; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PGEX-4T KEYWDS RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS, S100A13, TETRAMERIC KEYWDS 2 COMPLEX, MEMBRANE PROTEIN-METAL BINDING PROTEIN COMPLEX EXPDTA SOLUTION NMR AUTHOR S.G.RANI,S.K.MOHAN,C.YU REVDAT 1 27-JUN-12 2LE9 0 JRNL AUTH S.G.RANI,S.K.MOHAN,C.YU JRNL TITL INTERACTION OF S100A13 WITH RECEPTOR FOR ADVANCED GLYCATION JRNL TITL 2 END PRODUCTS (RAGE) C2 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 & 2.2, CNS 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB102287. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY_1-1, 1.1 MM ENTITY_2-2, 25 REMARK 210 MM SODIUM PHOSPHATE-3, 100 MM REMARK 210 SODIUM CHLORIDE-4, 1 MM DTT-5, REMARK 210 0.02 MM SODIUM AZIDE-6, 90% H2O/ REMARK 210 10% D2O; 1.2 MM ENTITY_1-7, 1.2 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY_2-8, 25 MM SODIUM REMARK 210 PHOSPHATE-9, 100 MM SODIUM REMARK 210 CHLORIDE-10, 1 MM DTT-11, 0.02 MM REMARK 210 SODIUM AZIDE-12, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 13C-FILTER NOESY; 3D HNCO; 13C REMARK 210 FILTER NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2 & 2.2, CNS 1.2, HADDOCK REMARK 210 2.0, SPARKY, VNMR, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 4000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 92 HZ2 LYS C 97 1.53 REMARK 500 OE2 GLU B 86 HZ1 LYS B 89 1.55 REMARK 500 HZ1 LYS C 51 OE2 GLU C 86 1.57 REMARK 500 OE1 GLU C 86 HZ2 LYS C 89 1.59 REMARK 500 OE1 GLU B 10 HD1 HIS C 48 1.59 REMARK 500 H1 ALA B 2 OXT LYS C 98 1.60 REMARK 500 OD2 ASP B 52 HZ2 LYS B 59 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 33.47 -82.25 REMARK 500 ALA A 33 -32.96 -145.08 REMARK 500 PRO A 37 -156.76 -98.18 REMARK 500 VAL A 46 80.03 68.49 REMARK 500 PRO A 52 106.98 -55.62 REMARK 500 SER A 83 -164.43 -118.89 REMARK 500 ALA B 3 58.84 -153.39 REMARK 500 ARG B 29 66.84 62.99 REMARK 500 LYS B 30 30.80 -73.85 REMARK 500 SER B 55 53.66 -92.64 REMARK 500 VAL B 65 -72.55 39.92 REMARK 500 ASN B 74 -56.72 72.91 REMARK 500 LYS B 91 21.38 -153.20 REMARK 500 LYS B 94 -42.28 -133.26 REMARK 500 ILE B 95 130.62 175.12 REMARK 500 ARG B 96 -51.21 -156.28 REMARK 500 ARG C 29 76.20 69.32 REMARK 500 LYS C 30 70.32 -68.76 REMARK 500 ASP C 31 -39.43 -154.89 REMARK 500 THR C 43 30.84 -90.34 REMARK 500 GLN C 44 -52.61 -163.62 REMARK 500 LEU C 56 -17.75 -144.35 REMARK 500 LEU C 63 -71.43 -88.32 REMARK 500 GLN C 67 75.13 57.31 REMARK 500 LYS C 72 -169.09 -102.54 REMARK 500 ASN C 74 -50.51 75.04 REMARK 500 LYS C 91 27.34 -177.53 REMARK 500 ASP C 92 31.30 -86.22 REMARK 500 LYS C 94 -44.46 -147.40 REMARK 500 ILE C 95 124.87 176.99 REMARK 500 ARG C 96 -49.15 -140.51 REMARK 500 PRO D 37 -153.17 -94.84 REMARK 500 VAL D 46 102.70 68.68 REMARK 500 PRO D 52 98.46 -55.97 REMARK 500 HIS D 78 -120.07 -100.31 REMARK 500 ILE D 91 -161.72 -113.55 REMARK 500 PRO D 93 107.76 -53.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17704 RELATED DB: BMRB DBREF 2LE9 A 5 97 UNP Q15109 RAGE_HUMAN 235 327 DBREF 2LE9 B 2 98 UNP Q99584 S10AD_HUMAN 2 98 DBREF 2LE9 C 2 98 UNP Q99584 S10AD_HUMAN 2 98 DBREF 2LE9 D 5 97 UNP Q15109 RAGE_HUMAN 235 327 SEQRES 1 A 93 LEU GLU GLU VAL GLN LEU VAL VAL GLU PRO GLU GLY GLY SEQRES 2 A 93 ALA VAL ALA PRO GLY GLY THR VAL THR LEU THR CYS GLU SEQRES 3 A 93 VAL PRO ALA GLN PRO SER PRO GLN ILE HIS TRP MET LYS SEQRES 4 A 93 ASP GLY VAL PRO LEU PRO LEU PRO PRO SER PRO VAL LEU SEQRES 5 A 93 ILE LEU PRO GLU ILE GLY PRO GLN ASP GLN GLY THR TYR SEQRES 6 A 93 SER CYS VAL ALA THR HIS SER SER HIS GLY PRO GLN GLU SEQRES 7 A 93 SER ARG ALA VAL SER ILE SER ILE ILE GLU PRO GLY GLU SEQRES 8 A 93 GLU GLY SEQRES 1 B 97 ALA ALA GLU PRO LEU THR GLU LEU GLU GLU SER ILE GLU SEQRES 2 B 97 THR VAL VAL THR THR PHE PHE THR PHE ALA ARG GLN GLU SEQRES 3 B 97 GLY ARG LYS ASP SER LEU SER VAL ASN GLU PHE LYS GLU SEQRES 4 B 97 LEU VAL THR GLN GLN LEU PRO HIS LEU LEU LYS ASP VAL SEQRES 5 B 97 GLY SER LEU ASP GLU LYS MET LYS SER LEU ASP VAL ASN SEQRES 6 B 97 GLN ASP SER GLU LEU LYS PHE ASN GLU TYR TRP ARG LEU SEQRES 7 B 97 ILE GLY GLU LEU ALA LYS GLU ILE ARG LYS LYS LYS ASP SEQRES 8 B 97 LEU LYS ILE ARG LYS LYS SEQRES 1 C 97 ALA ALA GLU PRO LEU THR GLU LEU GLU GLU SER ILE GLU SEQRES 2 C 97 THR VAL VAL THR THR PHE PHE THR PHE ALA ARG GLN GLU SEQRES 3 C 97 GLY ARG LYS ASP SER LEU SER VAL ASN GLU PHE LYS GLU SEQRES 4 C 97 LEU VAL THR GLN GLN LEU PRO HIS LEU LEU LYS ASP VAL SEQRES 5 C 97 GLY SER LEU ASP GLU LYS MET LYS SER LEU ASP VAL ASN SEQRES 6 C 97 GLN ASP SER GLU LEU LYS PHE ASN GLU TYR TRP ARG LEU SEQRES 7 C 97 ILE GLY GLU LEU ALA LYS GLU ILE ARG LYS LYS LYS ASP SEQRES 8 C 97 LEU LYS ILE ARG LYS LYS SEQRES 1 D 93 LEU GLU GLU VAL GLN LEU VAL VAL GLU PRO GLU GLY GLY SEQRES 2 D 93 ALA VAL ALA PRO GLY GLY THR VAL THR LEU THR CYS GLU SEQRES 3 D 93 VAL PRO ALA GLN PRO SER PRO GLN ILE HIS TRP MET LYS SEQRES 4 D 93 ASP GLY VAL PRO LEU PRO LEU PRO PRO SER PRO VAL LEU SEQRES 5 D 93 ILE LEU PRO GLU ILE GLY PRO GLN ASP GLN GLY THR TYR SEQRES 6 D 93 SER CYS VAL ALA THR HIS SER SER HIS GLY PRO GLN GLU SEQRES 7 D 93 SER ARG ALA VAL SER ILE SER ILE ILE GLU PRO GLY GLU SEQRES 8 D 93 GLU GLY HELIX 1 1 THR B 7 ARG B 25 1 19 HELIX 2 2 VAL B 35 LEU B 46 1 12 HELIX 3 3 SER B 55 VAL B 65 1 11 HELIX 4 4 TYR B 76 LYS B 90 1 15 HELIX 5 5 THR C 7 ARG C 25 1 19 HELIX 6 6 SER C 34 THR C 43 1 10 HELIX 7 7 LEU C 56 LYS C 61 1 6 HELIX 8 8 TYR C 76 LYS C 90 1 15 SHEET 1 A 3 GLN A 9 VAL A 12 0 SHEET 2 A 3 VAL A 25 GLU A 30 -1 O THR A 28 N VAL A 11 SHEET 3 A 3 VAL A 55 LEU A 58 -1 O LEU A 56 N LEU A 27 SHEET 1 B 4 ALA A 18 VAL A 19 0 SHEET 2 B 4 VAL A 86 ILE A 90 1 O SER A 89 N VAL A 19 SHEET 3 B 4 GLY A 67 THR A 74 -1 N GLY A 67 O ILE A 88 SHEET 4 B 4 GLN A 38 ASP A 44 -1 N MET A 42 O SER A 70 SHEET 1 C 2 LEU B 33 SER B 34 0 SHEET 2 C 2 GLU B 70 LEU B 71 -1 O LEU B 71 N LEU B 33 SHEET 1 D 3 GLN D 9 VAL D 12 0 SHEET 2 D 3 GLY D 23 GLU D 30 -1 O THR D 28 N VAL D 11 SHEET 3 D 3 VAL D 55 ILE D 61 -1 O LEU D 56 N LEU D 27 SHEET 1 E 3 ILE D 39 LYS D 43 0 SHEET 2 E 3 GLY D 67 THR D 74 -1 O VAL D 72 N HIS D 40 SHEET 3 E 3 PRO D 80 GLN D 81 -1 O GLN D 81 N ALA D 73 SHEET 1 F 3 ILE D 39 LYS D 43 0 SHEET 2 F 3 GLY D 67 THR D 74 -1 O VAL D 72 N HIS D 40 SHEET 3 F 3 VAL D 86 ILE D 88 -1 O VAL D 86 N TYR D 69 SSBOND 1 CYS A 29 CYS A 71 1555 1555 2.03 SSBOND 2 CYS D 29 CYS D 71 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 154 0 0 8 18 0 0 6 0 0 0 32 END