HEADER TRANSFERASE,CELL ADHESION 19-NOV-10 2L6G TITLE FAT-LD2 DOUBLE LABELED CONSTRUCT WITH FREE LD4 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1, LINKER, PAXILLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAT DOMAIN, UNP RESIDUES 916-1053, LINKER, LD2, UNP COMPND 5 RESIDUES 140-161; COMPND 6 SYNONYM: FADK 1, PROTEIN-TYROSINE KINASE 2, PP125FAK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: FAT DOMAIN OF FOCAL ADHESION KINASE WITH THE LD2 MOTIF COMPND 10 OF PAXILLIN TETHERED VIA LINKER GSGGSGSGGSGGSG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS, UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 9031, 32644; SOURCE 4 GENE: PTK2, FAK, FAK1, PXN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_ORGANELLE: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FAT, FAK, LD2, LD4, PAXILLIN, TRANSFERASE-CELL ADHESION COMPLEX, KEYWDS 2 TRANSFERASE,CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.BERTOLUCCI,C.GUIBAO,C.ZHANG,J.ZHENG REVDAT 2 09-APR-14 2L6G 1 SOURCE REVDAT 1 30-MAY-12 2L6G 0 JRNL AUTH C.M.BERTOLUCCI,C.GUIBAO,J.ZHENG JRNL TITL FAT-LD2 DOUBLE LABELED CONSTRUCT WITH FREE LD4 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SAMPLES USED ARE CONSTRUCTS IN REMARK 3 WHICH ONE MOTIF IS TETHERED TO THE C-TERMINUS OF THE FAT DOMAIN REMARK 3 VIA A GGSX LINKER AND THE OTHER LD MOTIF IS BOUND AS A FREE REMARK 3 PEPTIDE. THE GGS LINKERS ARE UNSTRUCTURED AND COMPARISON OF REMARK 3 SPECTRA LEAD US TO BELIEVE THEY DO NOT IMPOSE ANY CONSTRAINT UPON REMARK 3 HOW THE TETHERED LD MOTIFS BIND TO FAT. HOWEVER WHEN ANALYZING REMARK 3 THE STRUCTURE IN CYANA, THE PRESENCE OF THE GGS LINKER IN THE REMARK 3 SEQUENCE INTERFERS WITH CYANA'S INITIAL ALIGNMENT OF THE 20 REMARK 3 LOWEST ENERGY STRUCTURES AND THUS CONFUSES RMSD AND TARGET REMARK 3 FUNCTION CALCULATIONS. WE FOUND THAT USING PSEUDO LINKERS IN REMARK 3 CYANA RESOLVED THIS PROBLEM WITHOUT CHANGING THE STRUCTURES IN REMARK 3 QUESTION AND SO WE CHOSE TO SUBMIT THE STRUCTURES IN THAT WAY. REMARK 3 2RP6 REPRESENTS A COMPOSITE STRUCTURE USING CONSTRAINTS OBTAINED REMARK 3 FROM THE 2RP7 AND 2RP9 DATA SETS. IT DOES NOT REPRESENT A NEW REMARK 3 CONSTRUCT IN ITSELF, BUT MOST ACCURATELY REPRESENTS THE COMPLETE REMARK 3 COMPLEX STRUCTURE BETWEEN PAXILLIN AND FOCAL ADHESION KINASE. REMARK 4 REMARK 4 2L6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB102016. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 FOCAL ADHESION KINASE 1, LINKER, REMARK 210 22-MERIC PEPTIDE FROM PAXILLIN-1, REMARK 210 10 MM POTASSIUM PHOSPHATE-2, 0.1 REMARK 210 % SODIUM AZIDE-3, 5 MM LD4 REMARK 210 PEPTIDE FROM PAXILLIN-4, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, NMRPIPE, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 143 REMARK 465 GLY A 144 REMARK 465 SER A 145 REMARK 465 GLY A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 -75.46 -131.92 REMARK 500 1 ALA A 35 107.09 -47.55 REMARK 500 1 SER A 68 -32.64 177.96 REMARK 500 1 GLN A 77 -73.01 -58.76 REMARK 500 1 THR A 100 -73.93 -77.69 REMARK 500 1 SER A 101 -34.88 -179.56 REMARK 500 1 GLN A 138 -59.10 -177.16 REMARK 500 1 SER A 139 142.67 -174.81 REMARK 500 1 ARG A 140 72.55 59.04 REMARK 500 1 PRO A 178 82.19 -69.70 REMARK 500 2 ALA A 5 -169.94 57.38 REMARK 500 2 ALA A 35 106.78 -47.31 REMARK 500 2 SER A 68 -33.13 178.28 REMARK 500 2 THR A 100 -73.80 -77.68 REMARK 500 2 SER A 101 -34.97 -179.53 REMARK 500 2 GLN A 138 -59.08 -170.39 REMARK 500 2 SER A 139 140.82 -174.31 REMARK 500 2 ASN A 159 -74.27 -114.02 REMARK 500 3 ALA A 5 -170.82 -61.36 REMARK 500 3 ASN A 6 -47.38 -157.63 REMARK 500 3 ALA A 35 106.76 -46.98 REMARK 500 3 SER A 68 -33.36 178.30 REMARK 500 3 ASN A 89 -71.77 -52.62 REMARK 500 3 THR A 100 -73.62 -77.67 REMARK 500 3 SER A 101 -34.93 -179.52 REMARK 500 3 GLN A 138 -63.52 -176.82 REMARK 500 3 ARG A 140 73.31 57.53 REMARK 500 3 PRO A 141 97.56 -69.74 REMARK 500 4 ALA A 5 85.87 -68.97 REMARK 500 4 ALA A 35 107.05 -47.49 REMARK 500 4 SER A 68 -32.92 178.19 REMARK 500 4 THR A 100 -73.15 -77.67 REMARK 500 4 SER A 101 -34.77 -179.50 REMARK 500 4 GLN A 138 -58.97 -171.70 REMARK 500 4 SER A 139 132.39 -172.22 REMARK 500 4 PRO A 141 -171.01 -69.77 REMARK 500 4 ASN A 159 -61.14 -126.68 REMARK 500 4 PRO A 178 86.95 -69.75 REMARK 500 5 GLU A 16 -61.44 -90.20 REMARK 500 5 ALA A 35 107.13 -47.76 REMARK 500 5 SER A 68 -32.61 177.96 REMARK 500 5 THR A 100 -73.64 -77.73 REMARK 500 5 SER A 101 -34.57 -179.74 REMARK 500 5 GLN A 138 -59.51 -169.99 REMARK 500 5 SER A 139 131.04 -172.46 REMARK 500 5 PRO A 141 78.77 -69.76 REMARK 500 5 PRO A 178 80.11 -69.73 REMARK 500 6 ASN A 6 34.36 -179.36 REMARK 500 6 ALA A 35 107.03 -47.43 REMARK 500 6 SER A 68 -33.26 178.22 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L6F RELATED DB: PDB REMARK 900 RELATED ID: 2L6H RELATED DB: PDB DBREF 2L6G A 5 142 UNP Q00944 FAK1_CHICK 916 1053 DBREF 2L6G A 158 179 UNP P49024 PAXI_CHICK 140 161 SEQADV 2L6G MET A 4 UNP Q00944 INITIATING METHIONINE SEQADV 2L6G GLY A 143 UNP Q00944 LINKER SEQADV 2L6G GLY A 144 UNP Q00944 LINKER SEQADV 2L6G SER A 145 UNP Q00944 LINKER SEQADV 2L6G GLY A 146 UNP Q00944 LINKER SEQADV 2L6G GLY A 147 UNP Q00944 LINKER SEQADV 2L6G SER A 148 UNP Q00944 LINKER SEQADV 2L6G GLY A 149 UNP Q00944 LINKER SEQADV 2L6G SER A 150 UNP Q00944 LINKER SEQADV 2L6G GLY A 151 UNP Q00944 LINKER SEQADV 2L6G GLY A 152 UNP Q00944 LINKER SEQADV 2L6G SER A 153 UNP Q00944 LINKER SEQADV 2L6G GLY A 154 UNP Q00944 LINKER SEQADV 2L6G GLY A 155 UNP Q00944 LINKER SEQADV 2L6G SER A 156 UNP Q00944 LINKER SEQADV 2L6G GLY A 157 UNP Q00944 LINKER SEQRES 1 A 176 MET ALA ASN LEU ASP ARG SER ASN ASP LYS VAL TYR GLU SEQRES 2 A 176 ASN VAL THR GLY LEU VAL LYS ALA VAL ILE GLU MET SER SEQRES 3 A 176 SER LYS ILE GLN PRO ALA PRO PRO GLU GLU TYR VAL PRO SEQRES 4 A 176 MET VAL LYS GLU VAL GLY LEU ALA LEU ARG THR LEU LEU SEQRES 5 A 176 ALA THR VAL ASP GLU SER LEU PRO VAL LEU PRO ALA SER SEQRES 6 A 176 THR HIS ARG GLU ILE GLU MET ALA GLN LYS LEU LEU ASN SEQRES 7 A 176 SER ASP LEU ALA GLU LEU ILE ASN LYS MET LYS LEU ALA SEQRES 8 A 176 GLN GLN TYR VAL MET THR SER LEU GLN GLN GLU TYR LYS SEQRES 9 A 176 LYS GLN MET LEU THR ALA ALA HIS ALA LEU ALA VAL ASP SEQRES 10 A 176 ALA LYS ASN LEU LEU ASP VAL ILE ASP GLN ALA ARG LEU SEQRES 11 A 176 LYS MET ILE SER GLN SER ARG PRO HIS GLY GLY SER GLY SEQRES 12 A 176 GLY SER GLY SER GLY GLY SER GLY GLY SER GLY SER ASN SEQRES 13 A 176 LEU SER GLU LEU ASP ARG LEU LEU LEU GLU LEU ASN ALA SEQRES 14 A 176 VAL GLN HIS ASN PRO PRO SER HELIX 1 1 ARG A 9 LYS A 31 1 23 HELIX 2 2 PRO A 36 LEU A 65 1 30 HELIX 3 3 THR A 69 TYR A 97 1 29 HELIX 4 4 LEU A 102 SER A 137 1 36 HELIX 5 5 ASN A 159 ASN A 176 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 184 0 0 5 0 0 0 6 0 0 0 14 END