HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-AUG-10 2L1T TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF NP_954075.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-108; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 GENE: GSU3033; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS PUTATIVE C-DI-GMP BINDING, GSU3033, PILZ, STRUCTURAL GENOMICS, PSI- KEYWDS 2 BIOLOGY, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.SUSAC,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 2 03-AUG-11 2L1T 1 VERSN KEYWDS REVDAT 1 18-AUG-10 2L1T 0 JRNL AUTH L.SUSAC,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE PROTEIN NP_954075.1 FROM GEOBACTER JRNL TITL 2 SULFURREDUCENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB101849. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.075 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-95% 13C; U-95% 15N] REMARK 210 NP_954075.1, 25 MM SODIUM REMARK 210 PHOSPHATE, 4.5 MM SODIUM AZIDE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 (ALI); 4D APSY-HACANH; 5D APSY- REMARK 210 HACA(CO)NH; 5D APSY-CBCA(CO)NH; REMARK 210 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 (ARO) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA, TOPSPIN, UNIO REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 TYR A 108 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 5 LEU A 86 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 5 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 6 LEU A 25 CB - CG - CD1 ANGL. DEV. = 13.5 DEGREES REMARK 500 6 VAL A 70 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 7 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 8 TYR A 9 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 11 TYR A 12 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 11 VAL A 19 CA - CB - CG2 ANGL. DEV. = 12.0 DEGREES REMARK 500 11 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 11.4 DEGREES REMARK 500 11 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 12 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 12 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 12.1 DEGREES REMARK 500 12 TYR A 108 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 13 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 13 LEU A 25 CB - CG - CD1 ANGL. DEV. = 13.6 DEGREES REMARK 500 14 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 15 TYR A 108 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 16 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 16 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 12.2 DEGREES REMARK 500 17 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 17 LEU A 25 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 18 TYR A 12 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 18 TYR A 12 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 18 LEU A 86 CB - CG - CD1 ANGL. DEV. = 14.1 DEGREES REMARK 500 18 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 20 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 20 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 41.42 -147.90 REMARK 500 1 SER A 7 -81.78 -137.00 REMARK 500 1 LEU A 21 49.27 -142.00 REMARK 500 1 THR A 22 103.31 -58.60 REMARK 500 1 THR A 38 -30.75 -131.40 REMARK 500 1 LEU A 49 -171.69 53.14 REMARK 500 1 ASN A 58 1.29 53.95 REMARK 500 1 GLU A 84 -66.39 65.26 REMARK 500 1 ARG A 87 -41.80 -132.87 REMARK 500 1 ARG A 99 166.78 59.38 REMARK 500 1 ARG A 105 45.26 -156.00 REMARK 500 1 GLU A 107 83.37 -66.18 REMARK 500 2 SER A 7 -15.20 -155.79 REMARK 500 2 ASP A 27 -55.21 74.99 REMARK 500 2 SER A 43 37.07 -75.39 REMARK 500 2 LEU A 49 -172.03 45.30 REMARK 500 2 ALA A 75 -164.57 -171.18 REMARK 500 2 GLU A 84 -61.57 65.69 REMARK 500 2 GLU A 107 31.26 -81.29 REMARK 500 3 MET A 2 -168.97 53.67 REMARK 500 3 SER A 3 -84.04 66.43 REMARK 500 3 ALA A 4 -42.53 65.90 REMARK 500 3 SER A 7 -176.48 57.87 REMARK 500 3 GLU A 8 0.27 55.26 REMARK 500 3 ASP A 27 -5.96 63.92 REMARK 500 3 THR A 38 -31.28 -131.96 REMARK 500 3 LEU A 40 101.62 -161.81 REMARK 500 3 GLU A 48 58.50 -147.66 REMARK 500 3 LEU A 49 -169.87 47.72 REMARK 500 3 ALA A 52 -50.76 69.36 REMARK 500 3 GLU A 84 -54.14 65.92 REMARK 500 3 ARG A 87 -52.96 -136.52 REMARK 500 3 GLU A 107 48.75 -77.06 REMARK 500 4 SER A 3 118.95 66.32 REMARK 500 4 ASP A 5 171.51 58.55 REMARK 500 4 SER A 7 -71.87 174.99 REMARK 500 4 THR A 28 -35.49 -154.30 REMARK 500 4 THR A 38 -36.76 -132.40 REMARK 500 4 LEU A 49 -169.28 52.04 REMARK 500 4 THR A 59 -52.31 -132.14 REMARK 500 4 GLU A 84 -45.60 64.45 REMARK 500 4 ARG A 87 -30.43 -143.39 REMARK 500 4 ARG A 105 166.29 179.55 REMARK 500 5 ALA A 4 -179.10 75.14 REMARK 500 5 SER A 7 3.69 -154.63 REMARK 500 5 THR A 22 105.44 -49.95 REMARK 500 5 LEU A 25 68.65 -104.76 REMARK 500 5 GLU A 48 16.33 -143.42 REMARK 500 5 LEU A 49 161.58 54.71 REMARK 500 5 ALA A 52 -61.82 50.92 REMARK 500 REMARK 500 THIS ENTRY HAS 249 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 24 0.08 SIDE CHAIN REMARK 500 1 ARG A 105 0.16 SIDE CHAIN REMARK 500 2 ARG A 24 0.08 SIDE CHAIN REMARK 500 2 ARG A 90 0.10 SIDE CHAIN REMARK 500 3 TYR A 9 0.07 SIDE CHAIN REMARK 500 3 TYR A 12 0.08 SIDE CHAIN REMARK 500 3 ARG A 87 0.08 SIDE CHAIN REMARK 500 4 ARG A 78 0.11 SIDE CHAIN REMARK 500 4 ARG A 105 0.17 SIDE CHAIN REMARK 500 5 ARG A 11 0.10 SIDE CHAIN REMARK 500 5 ARG A 99 0.08 SIDE CHAIN REMARK 500 6 ARG A 101 0.12 SIDE CHAIN REMARK 500 7 TYR A 12 0.07 SIDE CHAIN REMARK 500 7 ARG A 82 0.10 SIDE CHAIN REMARK 500 8 ARG A 11 0.08 SIDE CHAIN REMARK 500 8 ARG A 78 0.11 SIDE CHAIN REMARK 500 8 ARG A 87 0.11 SIDE CHAIN REMARK 500 8 ARG A 106 0.14 SIDE CHAIN REMARK 500 10 TYR A 9 0.09 SIDE CHAIN REMARK 500 10 ARG A 90 0.08 SIDE CHAIN REMARK 500 12 ARG A 90 0.11 SIDE CHAIN REMARK 500 12 ARG A 105 0.09 SIDE CHAIN REMARK 500 13 ARG A 78 0.08 SIDE CHAIN REMARK 500 13 ARG A 90 0.12 SIDE CHAIN REMARK 500 13 ARG A 105 0.08 SIDE CHAIN REMARK 500 13 TYR A 108 0.07 SIDE CHAIN REMARK 500 14 ARG A 11 0.08 SIDE CHAIN REMARK 500 14 ARG A 78 0.09 SIDE CHAIN REMARK 500 14 ARG A 90 0.10 SIDE CHAIN REMARK 500 14 ARG A 99 0.13 SIDE CHAIN REMARK 500 15 ARG A 24 0.08 SIDE CHAIN REMARK 500 15 ARG A 90 0.09 SIDE CHAIN REMARK 500 15 ARG A 105 0.08 SIDE CHAIN REMARK 500 16 ARG A 82 0.08 SIDE CHAIN REMARK 500 16 ARG A 95 0.09 SIDE CHAIN REMARK 500 17 ARG A 11 0.09 SIDE CHAIN REMARK 500 17 ARG A 87 0.08 SIDE CHAIN REMARK 500 17 ARG A 105 0.08 SIDE CHAIN REMARK 500 18 ARG A 87 0.08 SIDE CHAIN REMARK 500 18 ARG A 95 0.09 SIDE CHAIN REMARK 500 18 ARG A 99 0.10 SIDE CHAIN REMARK 500 19 TYR A 12 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374984 RELATED DB: TARGETDB DBREF 2L1T A 2 109 UNP Q748G9 Q748G9_GEOSL 1 108 SEQADV 2L1T GLY A 1 UNP Q748G9 EXPRESSION TAG SEQRES 1 A 109 GLY MET SER ALA ASP GLY SER GLU TYR GLY ARG TYR PHE SEQRES 2 A 109 GLU GLN LEU GLN LYS VAL ASN LEU THR VAL ARG LEU GLY SEQRES 3 A 109 ASP THR GLY SER PHE ASP GLY THR ALA ALA ILE THR SER SEQRES 4 A 109 LEU LYS GLY SER LEU ALA TRP LEU GLU LEU PHE GLY ALA SEQRES 5 A 109 GLU GLN PRO PRO PRO ASN THR LEU SER GLU GLY ALA GLU SEQRES 6 A 109 VAL SER VAL SER VAL TRP THR GLY GLY ALA LEU CYS ARG SEQRES 7 A 109 CYS ASP GLY ARG VAL GLU THR LEU ARG ASP ASP ARG GLN SEQRES 8 A 109 PHE ALA ILE ARG LEU VAL GLY ARG VAL ARG GLU LEU GLN SEQRES 9 A 109 ARG ARG GLU TYR PHE HELIX 1 1 GLU A 8 TYR A 12 5 5 SHEET 1 A 7 LYS A 18 LEU A 25 0 SHEET 2 A 7 GLY A 29 LYS A 41 -1 O ALA A 35 N VAL A 19 SHEET 3 A 7 LEU A 44 LEU A 47 -1 O LEU A 44 N LYS A 41 SHEET 4 A 7 PHE A 92 GLN A 104 -1 O PHE A 92 N LEU A 47 SHEET 5 A 7 ALA A 75 ARG A 82 -1 N LEU A 76 O GLN A 104 SHEET 6 A 7 GLU A 65 THR A 72 -1 N VAL A 68 O CYS A 79 SHEET 7 A 7 LYS A 18 LEU A 25 -1 N THR A 22 O SER A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 245 0 0 1 7 0 0 6 0 0 0 9 END