HEADER DNA BINDING PROTEIN 02-AUG-10 2L1P TITLE NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA-BINDING PROTEIN TITLE 2 SATB1 FROM HOMO SAPIENS: NORTHEAST STRUCTURAL GENOMICS TARGET TITLE 3 HR4435B(179-250) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 179-250; COMPND 5 SYNONYM: SPECIAL AT-RICH SEQUENCE-BINDING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SATB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS PSI-BIOLOGY, NESG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.V.T.SWAPNA,A.F.MONTELIONE,R.SHASTRY,C.CICCOSANTI,H.JANJUA,R.XIAO, AUTHOR 2 T.B.ACTON,J.K.EVERETT,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 22-FEB-12 2L1P 1 VERSN KEYWDS REVDAT 1 29-SEP-10 2L1P 0 JRNL AUTH G.V.T.SWAPNA,A.F.MONTELIONE,R.SHASTRY,C.CICCOSANTI,H.JANJUA, JRNL AUTH 2 R.XIAO,T.B.ACTON,J.K.EVERETT,G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF JRNL TITL 2 DNA-BINDING PROTEIN SATB1 FROM HOMO SAPIENS: NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS TARGET HR4435B(179-250) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 2.0.6 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED BACKBONE ASSIGNMENTS REMARK 3 WERE MADE USING AUTOASSIGN. SIDECHAIN ASSIGNMENTS WERE COMPLETED REMARK 3 MANUALLY. AUTOMATED NOESY ASSIGNMENTS WERE MADE USING REMARK 3 AUTOSTRUCTURE AND STRUCTURE SOLUTION WAS OBTAINED USING REMARK 3 AUTOSTRUCTURE AND CYANA-2.1. 150 STRUCTURES WERE CALCULATED AND REMARK 3 20 BEST STRUCTURES WERE REFINED IN A SHELL OF WATER USING CNS. REMARK 3 INITIAL DIHEDRAL ANGLES WERE OBTAINED USING TALOS. THE STRUCTURE REMARK 3 CALCULATIONS WERE DONE INCLUDING THE N-TERMINAL 6XHIS TAG. REMARK 3 RESONANCE ASSIGNMENTS WERE VALIDATED USING AVS VALIDATION REMARK 3 SOFTWARE. FINAL QUALITY SCORES WERE DETERMINED USING PSVS REMARK 3 SOFTWARE. ORDERED RESIDUES ARE DEFINED AS:11-13,18-54,62-77 . REMARK 3 RMSD(ORDERED RESIDUESALL BACKBONE AATOMS 0.9A; ALL HEAVY ATOMS REMARK 3 1.4A; RAMACHANDRAN STATISTICS FOR ALL ORDERED RESIDUES: MOST REMARK 3 FAVOURED 94.6%, ADDITIONALLY ALLOWED REGION: 5.4%; PROCHECK REMARK 3 SCORES FOR ALL ORDERED RESIDUES (RAW/Z) PHI-PSI 0.09/0.67; ALL REMARK 3 DIHEDRAL ANGLES 0.04/0.24; MOLPROBITY CLASH SCORE (RAW/Z) 13.00/- REMARK 3 0.71. RPF SCORES FOR THE GOODNESS OF FIR OF THE STRUCTURE TO THE REMARK 3 NMR DATA: RECALL:0.933; PRECISION 0.918; F-MEASURE 0.926 AND REMARK 3 FINAL DP SCORE: 0.768 REMARK 4 REMARK 4 2L1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB101845. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 100MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.08 MM [U-100% 13C; U-100% 15N] REMARK 210 HR4435B, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.2.1, AUTOSTRUCTURE REMARK 210 2.2.1, CYANA 2.1, CNS 2.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DATA ACQUISITION ON B600 WAS PERFORMED USING 35 UL OF REMARK 210 1.08MM SAMPLE AND A 1.7MM MICROCRYOPROBE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 88.39 -64.74 REMARK 500 1 PRO A 14 77.78 -63.17 REMARK 500 1 SER A 55 92.13 -62.41 REMARK 500 1 TYR A 58 -74.76 -54.99 REMARK 500 1 ALA A 59 -67.87 63.87 REMARK 500 1 ASN A 60 92.04 -54.48 REMARK 500 1 THR A 79 33.56 -80.12 REMARK 500 1 LYS A 80 160.88 66.70 REMARK 500 1 ASP A 81 97.53 70.06 REMARK 500 2 HIS A 4 -39.98 73.48 REMARK 500 2 HIS A 7 -60.50 -91.91 REMARK 500 2 HIS A 8 -172.10 59.30 REMARK 500 2 HIS A 10 -37.96 -131.81 REMARK 500 2 ALA A 25 -63.58 -105.39 REMARK 500 2 LEU A 30 23.76 -76.89 REMARK 500 2 LYS A 78 91.95 56.28 REMARK 500 2 LYS A 80 -2.82 68.01 REMARK 500 3 HIS A 3 95.91 -61.66 REMARK 500 3 HIS A 6 -174.71 62.57 REMARK 500 3 HIS A 7 140.43 68.46 REMARK 500 3 SER A 9 -57.18 66.91 REMARK 500 3 HIS A 10 41.82 -71.01 REMARK 500 3 PRO A 14 99.40 -62.87 REMARK 500 3 GLU A 15 -57.63 -140.85 REMARK 500 3 PRO A 43 32.57 -71.07 REMARK 500 3 THR A 56 -70.90 -64.10 REMARK 500 3 TYR A 58 99.12 67.44 REMARK 500 3 ALA A 59 31.78 -79.18 REMARK 500 3 ASN A 60 134.07 70.50 REMARK 500 3 LYS A 78 85.67 53.09 REMARK 500 3 LYS A 80 102.19 -167.61 REMARK 500 3 ASP A 81 -75.05 -96.04 REMARK 500 4 HIS A 3 31.09 -91.34 REMARK 500 4 HIS A 4 86.08 -64.29 REMARK 500 4 HIS A 6 -171.09 58.65 REMARK 500 4 HIS A 7 88.89 -173.41 REMARK 500 4 SER A 9 121.95 -172.59 REMARK 500 4 PRO A 14 70.49 -69.36 REMARK 500 4 GLU A 15 -72.05 -106.31 REMARK 500 4 PRO A 43 25.94 -71.52 REMARK 500 4 SER A 51 -60.11 -93.83 REMARK 500 4 TYR A 57 20.69 -153.84 REMARK 500 4 ALA A 59 -30.08 71.28 REMARK 500 4 VAL A 61 107.36 -52.93 REMARK 500 4 LYS A 65 0.20 -66.18 REMARK 500 4 THR A 79 39.44 -86.31 REMARK 500 4 MET A 82 136.70 67.19 REMARK 500 5 HIS A 3 -60.70 71.10 REMARK 500 5 HIS A 4 -32.22 71.65 REMARK 500 5 PRO A 14 86.92 -57.29 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR4435B RELATED DB: TARGETDB DBREF 2L1P A 12 83 UNP Q01826 SATB1_HUMAN 179 250 SEQADV 2L1P MET A 1 UNP Q01826 EXPRESSION TAG SEQADV 2L1P GLY A 2 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 3 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 4 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 5 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 6 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 7 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 8 UNP Q01826 EXPRESSION TAG SEQADV 2L1P SER A 9 UNP Q01826 EXPRESSION TAG SEQADV 2L1P HIS A 10 UNP Q01826 EXPRESSION TAG SEQADV 2L1P MET A 11 UNP Q01826 EXPRESSION TAG SEQRES 1 A 83 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET LEU PRO SEQRES 2 A 83 PRO GLU GLN TRP SER HIS THR THR VAL ARG ASN ALA LEU SEQRES 3 A 83 LYS ASP LEU LEU LYS ASP MET ASN GLN SER SER LEU ALA SEQRES 4 A 83 LYS GLU CYS PRO LEU SER GLN SER MET ILE SER SER ILE SEQRES 5 A 83 VAL ASN SER THR TYR TYR ALA ASN VAL SER ALA ALA LYS SEQRES 6 A 83 CYS GLN GLU PHE GLY ARG TRP TYR LYS HIS PHE LYS LYS SEQRES 7 A 83 THR LYS ASP MET MET HELIX 1 1 SER A 18 LYS A 31 1 14 HELIX 2 2 ASN A 34 CYS A 42 1 9 HELIX 3 3 SER A 45 ASN A 54 1 10 HELIX 4 4 ALA A 63 LYS A 78 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 161 0 0 4 0 0 0 6 0 0 0 7 END