HEADER RNA 22-DEC-09 2KRV TITLE SOLUTION STRUCTURE OF THE E. COLI TRNA-ARG1 (ICG) ASL CONTAINING THE TITLE 2 2-THIOCYTIDINE MODIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*CP*UP*CP*GP*GP*(RSP) COMPND 3 P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA, TRNA, 2-THIOCYTIDINE, MODIFICATION, ASL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.BILBILLE,P.F.AGRIS REVDAT 1 01-DEC-10 2KRV 0 JRNL AUTH Y.BILBILLE,W.A.CANTARA,J.KIM,P.F.AGRIS JRNL TITL SOLUTION STRUCTURE OF THE TRNA-ARG-1 (ICG) ASL CONTAING THE JRNL TITL 2 2-THIOCYTIDINE MODIFICATION IN POSITION 32. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRV COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB101496. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM RNA (5'-R(*CP*UP*CP*GP* REMARK 210 GP*(N)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')-1, 90% H2O/10% D2O; REMARK 210 0.8 MM RNA (5'-R(*CP*UP*CP*GP*GP*(N)P*UP*IP*CP*GP*AP*AP*CP*CP*GP* REMARK 210 AP*G)-3')-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D DQF-COSY; 2D REMARK 210 1H-1H COSY; 2D 1H-1H TOCSY; 2D 1H REMARK 210 -13C HSQC; 2D 1H-31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, TOPSPIN, VNMRJ, REMARK 210 NMRPIPE, NMRDRAW, SPARKY, CNS REMARK 210 1.21, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16650 RELATED DB: BMRB REMARK 900 RELATED ID: 2KRY RELATED DB: PDB REMARK 900 RELATED ID: 2KRW RELATED DB: PDB REMARK 900 RELATED ID: 2KRZ RELATED DB: PDB REMARK 900 RELATED ID: 2KRQ RELATED DB: PDB REMARK 900 RELATED ID: 2KRP RELATED DB: PDB DBREF 2KRV A 1 17 PDB 2KRV 2KRV 1 17 SEQRES 1 A 17 C U C G G RSP U I C G A A C SEQRES 2 A 17 C G A G HET RSP A 6 31 HETNAM RSP 4-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL) HETNAM 2 RSP PYRIMIDINE-2(1H)-THIONE FORMUL 1 RSP C9 H14 N3 O7 P S LINK O3' G A 5 P RSP A 6 1555 1555 1.61 LINK O3' RSP A 6 P U A 7 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 78 0 1 0 0 0 0 6 0 0 0 2 END