HEADER CHAPERONE BINDING PROTEIN 19-NOV-09 2KQX TITLE NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-72) IN THE TITLE 2 ESCHERICHIA COLI CBPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CURVED DNA-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: J-DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: CBPA, B1000, JW0985; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PFO1; SOURCE 10 OTHER_DETAILS: A DERIVATIVE OF PET15B VECOR (NOVAGEN) KEYWDS CBPA-J DOMAIN, CO-CHAPERONE, ESCHERICHIA COLI, CHAPERONE KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR I.EKIEL REVDAT 1 21-APR-10 2KQX 0 JRNL AUTH N.S.SARRAF,J.BAARDSNES,J.CHENG,M.O'CONNOR-MCCOURT, JRNL AUTH 2 M.CYGLER,I.EKIEL JRNL TITL STRUCTURAL BASIS OF THE REGULATION OF THE CBPA JRNL TITL 2 CO-CHAPERONE BY ITS SPECIFIC MODULATOR CBPM. JRNL REF J.MOL.BIOL. V. 398 111 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20226195 JRNL DOI 10.1016/J.JMB.2010.03.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.23 REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KQX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB101462. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PROTEIN, REMARK 210 50 MM SODIUM PHOSPHATE, 250 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 49 H TRP A 53 1.20 REMARK 500 O ARG A 62 H ASP A 66 1.34 REMARK 500 HA TYR A 7 HG13 VAL A 12 1.36 REMARK 500 HA MET A 10 HG LEU A 28 1.38 REMARK 500 O ARG A 61 H TYR A 65 1.39 REMARK 500 O LYS A 22 H ARG A 26 1.40 REMARK 500 O ILE A 21 H TYR A 25 1.41 REMARK 500 O TYR A 6 H MET A 10 1.47 REMARK 500 O ALA A 52 H LEU A 56 1.47 REMARK 500 O ASP A 41 H ARG A 45 1.48 REMARK 500 O GLN A 60 H GLU A 64 1.49 REMARK 500 HE2 TYR A 6 HG11 VAL A 55 1.51 REMARK 500 O ASP A 5 H ILE A 9 1.52 REMARK 500 O LYS A 4 H TYR A 6 1.53 REMARK 500 O PHE A 46 H ALA A 50 1.53 REMARK 500 O ALA A 42 H PHE A 46 1.54 REMARK 500 O TYR A 25 H ALA A 29 1.54 REMARK 500 O ALA A 29 H HIS A 33 1.54 REMARK 500 HG21 VAL A 12 HG22 THR A 20 1.55 REMARK 500 O LYS A 47 H GLU A 51 1.56 REMARK 500 O ALA A 63 H GLN A 67 1.56 REMARK 500 HD13 LEU A 3 HE1 TYR A 65 1.57 REMARK 500 O ALA A 44 H GLU A 48 1.57 REMARK 500 OD2 ASP A 16 HG1 THR A 20 1.57 REMARK 500 O LEU A 28 H TYR A 32 1.57 REMARK 500 HA LEU A 56 HG3 ARG A 62 1.59 REMARK 500 HG22 VAL A 12 HA ILE A 21 1.59 REMARK 500 O THR A 20 H ALA A 24 1.60 REMARK 500 HD1 TYR A 7 HG13 VAL A 12 1.60 REMARK 500 O VAL A 49 N TRP A 53 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 ALA A 8 N - CA - CB ANGL. DEV. = -8.4 DEGREES REMARK 500 1 ALA A 50 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 2 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 ALA A 8 N - CA - CB ANGL. DEV. = -9.0 DEGREES REMARK 500 2 ALA A 50 N - CA - CB ANGL. DEV. = -9.5 DEGREES REMARK 500 3 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 3 ALA A 8 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 3 ALA A 50 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 4 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 4 ALA A 50 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 5 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 5 ALA A 50 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 6 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 6 ALA A 8 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 6 SER A 37 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 6 ALA A 50 N - CA - CB ANGL. DEV. = -10.4 DEGREES REMARK 500 7 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 7 ALA A 8 N - CA - CB ANGL. DEV. = -8.6 DEGREES REMARK 500 7 ALA A 50 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 8 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 8 ALA A 8 N - CA - CB ANGL. DEV. = -8.4 DEGREES REMARK 500 8 ALA A 50 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 9 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 9 ALA A 8 N - CA - CB ANGL. DEV. = -8.6 DEGREES REMARK 500 9 ALA A 50 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 10 TYR A 6 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 10 ALA A 8 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 10 ALA A 50 N - CA - CB ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 5 66.72 -62.92 REMARK 500 1 VAL A 12 -155.82 -147.65 REMARK 500 1 ASP A 16 -166.02 -109.02 REMARK 500 1 LEU A 28 -72.86 -65.26 REMARK 500 1 TRP A 69 -110.29 -66.79 REMARK 500 2 ASP A 5 59.42 -111.20 REMARK 500 2 VAL A 12 -155.88 -148.10 REMARK 500 2 LEU A 28 -73.10 -64.16 REMARK 500 2 ASP A 41 32.04 -149.70 REMARK 500 2 TRP A 69 -97.39 -56.33 REMARK 500 3 ASP A 5 68.59 -62.74 REMARK 500 3 VAL A 12 -155.26 -149.19 REMARK 500 3 THR A 15 53.59 -146.45 REMARK 500 3 ASP A 16 -158.63 -111.19 REMARK 500 3 LEU A 28 -73.40 -61.25 REMARK 500 3 LYS A 38 67.79 -117.54 REMARK 500 3 ASP A 41 38.45 -152.76 REMARK 500 3 TRP A 69 -125.13 -61.74 REMARK 500 4 ASP A 5 65.08 -60.81 REMARK 500 4 VAL A 12 -155.76 -146.45 REMARK 500 4 THR A 15 43.92 -140.15 REMARK 500 4 LEU A 28 -74.34 -62.33 REMARK 500 4 LYS A 38 67.59 -118.56 REMARK 500 4 ASP A 41 34.76 -149.18 REMARK 500 4 TRP A 69 -117.64 -61.73 REMARK 500 5 ASP A 5 67.46 -61.85 REMARK 500 5 VAL A 12 -155.48 -141.86 REMARK 500 5 ASP A 16 -159.00 -88.96 REMARK 500 5 LEU A 28 -73.38 -63.92 REMARK 500 5 ASP A 41 38.23 -157.66 REMARK 500 5 TRP A 69 -118.81 -63.91 REMARK 500 6 ASP A 5 64.38 -63.50 REMARK 500 6 VAL A 12 -155.33 -146.40 REMARK 500 6 THR A 15 24.95 -147.00 REMARK 500 6 ASP A 16 -159.94 -79.78 REMARK 500 6 LEU A 28 -73.50 -62.44 REMARK 500 6 VAL A 36 103.73 -160.22 REMARK 500 6 TRP A 69 -119.16 -59.98 REMARK 500 7 ASP A 5 64.91 -62.49 REMARK 500 7 VAL A 12 -155.57 -148.44 REMARK 500 7 LEU A 28 -74.10 -64.10 REMARK 500 7 LYS A 38 66.86 -117.67 REMARK 500 7 ASP A 41 32.29 -149.37 REMARK 500 7 TRP A 69 -120.06 -62.53 REMARK 500 8 ASP A 5 66.04 -60.82 REMARK 500 8 VAL A 12 -156.44 -149.11 REMARK 500 8 THR A 15 55.33 -104.93 REMARK 500 8 LEU A 28 -75.35 -68.21 REMARK 500 8 VAL A 36 98.80 -160.22 REMARK 500 8 LYS A 38 74.98 -116.65 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 26 0.31 SIDE CHAIN REMARK 500 1 ARG A 27 0.17 SIDE CHAIN REMARK 500 1 ARG A 30 0.32 SIDE CHAIN REMARK 500 1 ARG A 45 0.31 SIDE CHAIN REMARK 500 1 ARG A 61 0.17 SIDE CHAIN REMARK 500 1 ARG A 62 0.21 SIDE CHAIN REMARK 500 1 ARG A 72 0.30 SIDE CHAIN REMARK 500 2 ARG A 26 0.20 SIDE CHAIN REMARK 500 2 ARG A 27 0.29 SIDE CHAIN REMARK 500 2 ARG A 30 0.25 SIDE CHAIN REMARK 500 2 ARG A 45 0.10 SIDE CHAIN REMARK 500 2 ARG A 61 0.26 SIDE CHAIN REMARK 500 2 ARG A 62 0.28 SIDE CHAIN REMARK 500 2 ARG A 72 0.20 SIDE CHAIN REMARK 500 3 ARG A 26 0.31 SIDE CHAIN REMARK 500 3 ARG A 27 0.31 SIDE CHAIN REMARK 500 3 ARG A 30 0.32 SIDE CHAIN REMARK 500 3 ARG A 61 0.20 SIDE CHAIN REMARK 500 3 ARG A 62 0.18 SIDE CHAIN REMARK 500 3 ARG A 72 0.20 SIDE CHAIN REMARK 500 4 ARG A 26 0.29 SIDE CHAIN REMARK 500 4 ARG A 27 0.21 SIDE CHAIN REMARK 500 4 ARG A 30 0.22 SIDE CHAIN REMARK 500 4 ARG A 61 0.30 SIDE CHAIN REMARK 500 4 ARG A 62 0.16 SIDE CHAIN REMARK 500 4 ARG A 72 0.10 SIDE CHAIN REMARK 500 5 ARG A 26 0.32 SIDE CHAIN REMARK 500 5 ARG A 27 0.22 SIDE CHAIN REMARK 500 5 ARG A 30 0.29 SIDE CHAIN REMARK 500 5 ARG A 45 0.22 SIDE CHAIN REMARK 500 5 ARG A 61 0.15 SIDE CHAIN REMARK 500 5 ARG A 62 0.28 SIDE CHAIN REMARK 500 5 ARG A 72 0.15 SIDE CHAIN REMARK 500 6 ARG A 26 0.18 SIDE CHAIN REMARK 500 6 ARG A 27 0.28 SIDE CHAIN REMARK 500 6 ARG A 30 0.29 SIDE CHAIN REMARK 500 6 ARG A 45 0.19 SIDE CHAIN REMARK 500 6 ARG A 61 0.18 SIDE CHAIN REMARK 500 6 ARG A 62 0.31 SIDE CHAIN REMARK 500 6 ARG A 72 0.32 SIDE CHAIN REMARK 500 7 ARG A 26 0.16 SIDE CHAIN REMARK 500 7 ARG A 27 0.28 SIDE CHAIN REMARK 500 7 ARG A 30 0.31 SIDE CHAIN REMARK 500 7 ARG A 45 0.10 SIDE CHAIN REMARK 500 7 ARG A 61 0.32 SIDE CHAIN REMARK 500 7 ARG A 62 0.12 SIDE CHAIN REMARK 500 8 ARG A 26 0.31 SIDE CHAIN REMARK 500 8 ARG A 30 0.32 SIDE CHAIN REMARK 500 8 ARG A 45 0.26 SIDE CHAIN REMARK 500 8 ARG A 61 0.25 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 66 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16618 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN MODEL 7 RESIDUE A ALA 52 AND RESIDUE A TRP 53 ARE NOT REMARK 999 PROPERLY LINKED: C-N BOND DISTANCE IS 1.20 A DBREF 2KQX A 2 72 UNP P36659 CBPA_ECOLI 2 72 SEQADV 2KQX GLY A 0 UNP P36659 EXPRESSION TAG SEQADV 2KQX SER A 1 UNP P36659 EXPRESSION TAG SEQRES 1 A 73 GLY SER GLU LEU LYS ASP TYR TYR ALA ILE MET GLY VAL SEQRES 2 A 73 LYS PRO THR ASP ASP LEU LYS THR ILE LYS THR ALA TYR SEQRES 3 A 73 ARG ARG LEU ALA ARG LYS TYR HIS PRO ASP VAL SER LYS SEQRES 4 A 73 GLU PRO ASP ALA GLU ALA ARG PHE LYS GLU VAL ALA GLU SEQRES 5 A 73 ALA TRP GLU VAL LEU SER ASP GLU GLN ARG ARG ALA GLU SEQRES 6 A 73 TYR ASP GLN MET TRP GLN HIS ARG HELIX 1 1 ASP A 5 MET A 10 1 6 HELIX 2 2 ASP A 17 HIS A 33 1 17 HELIX 3 3 ASP A 41 ASP A 58 1 18 HELIX 4 4 ASP A 58 TRP A 69 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 287 0 0 4 0 0 0 6 0 0 0 6 END