HEADER ELECTRON TRANSPORT 19-NOV-09 2KQU TITLE F98N APOFLAVODOXIN FROM ANABAENA PCC 7119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FDX; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA SP.; SOURCE 3 ORGANISM_TAXID: 1168; SOURCE 4 STRAIN: PCC 7119; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTRC99A KEYWDS FOLDING INTERMEDIATE, ELECTRON TRANSPORT, FLAVOPROTEIN, FMN, KEYWDS 2 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.AYUSO-TEJEDOR,J.SANCHO,M.A.JIMENEZ,P.BERNADO REVDAT 3 13-JUL-11 2KQU 1 VERSN REVDAT 2 21-JUL-10 2KQU 1 JRNL REVDAT 1 02-JUN-10 2KQU 0 JRNL AUTH S.AYUSO-TEJEDOR,V.E.ANGARICA,M.BUENO,L.A.CAMPOS,O.ABIAN, JRNL AUTH 2 P.BERNADO,J.SANCHO,M.A.JIMENEZ JRNL TITL DESIGN AND STRUCTURE OF AN EQUILIBRIUM PROTEIN FOLDING JRNL TITL 2 INTERMEDIATE. A HINT INTO DYNAMICAL REGIONS OF PROTEINS JRNL REF J.MOL.BIOL. V. 400 922 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20553732 JRNL DOI 10.1016/J.JMB.2010.05.050 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB101459. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM F98N-FDX; 5MM SODIUM REMARK 210 PHOSPHATE; 90% H2O; 10% D2O; REMARK 210 0.1MM DSS; 90% H2O/10% D2O; 1MM REMARK 210 F98N-FDX; 5MM SODIUM PHOSPHATE; REMARK 210 100% D2O; 0.1MM DSS; 100% D2O; REMARK 210 1MM [U-15N] F98N-FDX; 5MM SODIUM REMARK 210 PHOSPHATE; 90% H2O; 10% D2O; REMARK 210 0.1MM DSS; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNHA; 2D 1H-1H COSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 72 H ASP A 75 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 70.51 -174.92 REMARK 500 1 GLN A 11 -172.50 -53.13 REMARK 500 1 THR A 12 -96.39 -93.67 REMARK 500 1 GLU A 16 -90.55 -59.84 REMARK 500 1 ASN A 28 -155.21 -59.54 REMARK 500 1 VAL A 30 100.82 -48.29 REMARK 500 1 VAL A 31 86.92 -154.64 REMARK 500 1 ASP A 35 -31.18 -38.79 REMARK 500 1 VAL A 36 47.75 -86.35 REMARK 500 1 LEU A 62 -77.03 -166.15 REMARK 500 1 SER A 64 -58.80 -171.26 REMARK 500 1 TRP A 66 -64.26 -99.24 REMARK 500 1 TYR A 70 157.91 179.96 REMARK 500 1 VAL A 76 153.23 -40.41 REMARK 500 1 ASP A 90 79.86 -179.94 REMARK 500 1 ALA A 95 145.61 -172.52 REMARK 500 1 ASN A 98 -47.38 -179.98 REMARK 500 1 GLN A 99 91.18 -66.94 REMARK 500 1 ASP A 100 145.15 -174.77 REMARK 500 1 ILE A 102 122.07 -173.78 REMARK 500 1 GLU A 107 -50.58 -179.86 REMARK 500 1 ASP A 123 -46.22 -167.10 REMARK 500 1 ASN A 128 95.14 65.70 REMARK 500 1 SER A 130 83.11 -168.40 REMARK 500 1 ASN A 135 -66.65 -159.67 REMARK 500 1 ALA A 142 126.72 -171.85 REMARK 500 1 GLN A 148 156.52 -38.97 REMARK 500 1 THR A 152 175.86 -50.69 REMARK 500 1 SER A 158 -70.41 -72.48 REMARK 500 2 LYS A 3 55.93 -174.93 REMARK 500 2 THR A 12 131.87 -179.99 REMARK 500 2 SER A 17 121.13 -39.35 REMARK 500 2 ASN A 28 152.93 -38.64 REMARK 500 2 VAL A 30 101.68 -48.26 REMARK 500 2 VAL A 31 81.00 -153.65 REMARK 500 2 ASP A 35 -30.28 -39.97 REMARK 500 2 SER A 64 72.80 -177.37 REMARK 500 2 LEU A 69 142.62 -176.95 REMARK 500 2 TYR A 70 47.21 -155.30 REMARK 500 2 PHE A 78 93.62 -48.66 REMARK 500 2 PHE A 86 35.84 -88.38 REMARK 500 2 ASP A 90 89.04 -168.36 REMARK 500 2 GLN A 91 -85.14 -179.52 REMARK 500 2 TYR A 94 73.69 -173.67 REMARK 500 2 ALA A 95 79.42 49.78 REMARK 500 2 ASN A 98 149.05 -178.10 REMARK 500 2 ASP A 100 -64.42 -144.98 REMARK 500 2 ILE A 104 136.21 -173.88 REMARK 500 2 LEU A 105 -69.31 -150.52 REMARK 500 2 GLU A 107 -72.45 -179.95 REMARK 500 REMARK 500 THIS ENTRY HAS 672 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5011 RELATED DB: BMRB REMARK 900 WILD TYPE APOFLAVODOXIN FROM ANABAENA PCC 7119 REMARK 900 RELATED ID: 1FTG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE FOR WILD TYPE APOFLAVODOXIN FROM ANABAENA REMARK 900 PCC 7119 REMARK 900 RELATED ID: 16593 RELATED DB: BMRB DBREF 2KQU A 1 169 UNP P0A3E0 FLAV_ANASO 2 170 SEQADV 2KQU ALA A 1 UNP P0A3E0 SER 2 CLONING ARTIFACT SEQADV 2KQU ASN A 98 UNP P0A3E0 PHE 99 ENGINEERED MUTATION SEQRES 1 A 169 ALA LYS LYS ILE GLY LEU PHE TYR GLY THR GLN THR GLY SEQRES 2 A 169 LYS THR GLU SER VAL ALA GLU ILE ILE ARG ASP GLU PHE SEQRES 3 A 169 GLY ASN ASP VAL VAL THR LEU HIS ASP VAL SER GLN ALA SEQRES 4 A 169 GLU VAL THR ASP LEU ASN ASP TYR GLN TYR LEU ILE ILE SEQRES 5 A 169 GLY CYS PRO THR TRP ASN ILE GLY GLU LEU GLN SER ASP SEQRES 6 A 169 TRP GLU GLY LEU TYR SER GLU LEU ASP ASP VAL ASP PHE SEQRES 7 A 169 ASN GLY LYS LEU VAL ALA TYR PHE GLY THR GLY ASP GLN SEQRES 8 A 169 ILE GLY TYR ALA ASP ASN ASN GLN ASP ALA ILE GLY ILE SEQRES 9 A 169 LEU GLU GLU LYS ILE SER GLN ARG GLY GLY LYS THR VAL SEQRES 10 A 169 GLY TYR TRP SER THR ASP GLY TYR ASP PHE ASN ASP SER SEQRES 11 A 169 LYS ALA LEU ARG ASN GLY LYS PHE VAL GLY LEU ALA LEU SEQRES 12 A 169 ASP GLU ASP ASN GLN SER ASP LEU THR ASP ASP ARG ILE SEQRES 13 A 169 LYS SER TRP VAL ALA GLN LEU LYS SER GLU PHE GLY LEU HELIX 1 1 SER A 17 PHE A 26 1 10 HELIX 2 2 VAL A 41 TYR A 47 1 7 HELIX 3 3 LYS A 108 GLY A 113 1 6 HELIX 4 4 ASP A 154 LEU A 169 1 16 SHEET 1 A 5 THR A 32 LEU A 33 0 SHEET 2 A 5 GLY A 5 LEU A 6 1 N LEU A 6 O THR A 32 SHEET 3 A 5 TYR A 49 ILE A 52 1 O TYR A 49 N GLY A 5 SHEET 4 A 5 LYS A 81 TYR A 85 1 O ALA A 84 N ILE A 52 SHEET 5 A 5 GLY A 114 VAL A 117 1 O VAL A 117 N TYR A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 160 0 0 4 5 0 0 6 0 0 0 13 END