HEADER TRANSPORT PROTEIN 29-SEP-09 2KOR TITLE NMR SOLUTION STRUCTURES OF 2-OCTENOYL-ACP FROM STREPTOMYCES COELICOLOR TITLE 2 FATTY ACID SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: ACPP, SCO2389, SC4A7.17; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SC-APOFAS-PET21 KEYWDS ACYL CARRIER PROTEIN, INTERMEDIATE BINDING, FATTY ACID SYNTHASE, KEYWDS 2 FATTY ACID BIOSYNTHESIS, LIPID SYNTHESIS, PHOSPHOPANTETHEINE, KEYWDS 3 TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.PLOSKON,C.J.ARTHUR,M.P.CRUMP REVDAT 1 18-AUG-10 2KOR 0 JRNL AUTH E.PLOSKON,C.J.ARTHUR,A.L.KANARI,P.WATTANA-AMORN,C.WILLIAMS, JRNL AUTH 2 J.CROSBY,T.J.SIMPSON,C.L.WILLIS,M.P.CRUMP JRNL TITL RECOGNITION OF INTERMEDIATE FUNCTIONALITY BY ACYL CARRIER JRNL TITL 2 PROTEIN OVER A COMPLETE CYCLE OF FATTY ACID BIOSYNTHESIS JRNL REF CHEM.BIOL. V. 17 776 2010 JRNL REFN ISSN 1074-5521 JRNL PMID 20659690 JRNL DOI 10.1016/J.CHEMBIOL.2010.05.024 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE,NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 20 BEST STRUCTURES FROM LAST ITERATION REMARK 3 WERE SELECTED FOR WATER REFINEMENT. WATER REFINED STRUCTURES WERE REMARK 3 CALCULATED USING THE SLIGHTLY MODIFIED REFINEMENT SCRIPT APPLIED REMARK 3 TO THE RECOORD DATABASE. REMARK 4 REMARK 4 2KOR COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101384. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM POTASSIUM PHOSPHATE-1, REMARK 210 0.5MM SODIUM AZIDE-2, 1MM 2- REMARK 210 OCTENOYL PHOSPHOPANTETHEINE-3, REMARK 210 1MM [U-99% 13C; U-99% 15N] ACP-4, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 13C,15N FILTERED NOESY; 2D 13C, REMARK 210 15N FILTERED TOCSY; 2D F2 13C REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, CCPN_ANALYSIS REMARK 210 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 30 OD2 ASP A 35 1.56 REMARK 500 HA ASP A 71 HE2 LYS A 74 1.56 REMARK 500 HG13 VAL A 15 HB ILE A 21 1.59 REMARK 500 OD2 ASP A 62 HH TYR A 75 1.60 REMARK 500 HA SER A 31 HA THR A 68 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TYR A 75 CZ TYR A 75 CE2 0.093 REMARK 500 8 TYR A 75 CE1 TYR A 75 CZ -0.083 REMARK 500 8 TYR A 75 CZ TYR A 75 CE2 0.115 REMARK 500 11 TYR A 75 CE1 TYR A 75 CZ 0.132 REMARK 500 11 TYR A 75 CZ TYR A 75 CE2 -0.122 REMARK 500 14 TYR A 75 CE1 TYR A 75 CZ -0.108 REMARK 500 14 TYR A 75 CZ TYR A 75 CE2 0.139 REMARK 500 15 TYR A 75 CE1 TYR A 75 CZ 0.130 REMARK 500 15 TYR A 75 CZ TYR A 75 CE2 -0.124 REMARK 500 17 TYR A 75 CE1 TYR A 75 CZ 0.176 REMARK 500 17 TYR A 75 CZ TYR A 75 CE2 -0.163 REMARK 500 18 TYR A 75 CE1 TYR A 75 CZ 0.132 REMARK 500 18 TYR A 75 CZ TYR A 75 CE2 -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 22 140.87 -37.78 REMARK 500 1 ASP A 34 -60.57 -139.37 REMARK 500 1 ASP A 37 101.27 66.29 REMARK 500 1 ASP A 39 -39.63 71.32 REMARK 500 1 SER A 40 -49.72 90.77 REMARK 500 1 LYS A 64 -2.76 -59.76 REMARK 500 1 LYS A 67 -79.13 -148.35 REMARK 500 2 PHE A 32 -76.29 -57.75 REMARK 500 2 ASP A 34 -52.91 -170.20 REMARK 500 2 ASP A 37 87.83 62.65 REMARK 500 2 VAL A 38 45.49 -98.87 REMARK 500 2 SER A 40 -76.43 52.59 REMARK 500 2 LYS A 64 -6.44 -56.54 REMARK 500 2 LYS A 67 -70.55 -141.35 REMARK 500 3 PRO A 22 142.08 -39.36 REMARK 500 3 VAL A 23 21.25 -79.09 REMARK 500 3 ASP A 29 65.46 -103.48 REMARK 500 3 ASP A 34 -74.96 -144.98 REMARK 500 3 ASP A 37 99.19 0.01 REMARK 500 3 ASP A 39 -0.26 64.18 REMARK 500 3 SER A 40 -46.37 63.24 REMARK 500 3 LYS A 67 -64.70 -146.76 REMARK 500 4 PHE A 32 -71.99 -61.20 REMARK 500 4 ASP A 34 -57.62 -171.94 REMARK 500 4 ASP A 37 100.28 67.75 REMARK 500 4 SER A 40 -73.35 53.53 REMARK 500 4 ASP A 55 73.48 59.33 REMARK 500 4 LYS A 67 -81.06 -134.39 REMARK 500 5 PHE A 32 -71.70 -55.57 REMARK 500 5 THR A 33 43.38 -88.98 REMARK 500 5 ASP A 34 -20.35 -162.19 REMARK 500 5 ASP A 35 -54.44 -126.93 REMARK 500 5 ASP A 37 84.11 68.22 REMARK 500 5 ASP A 39 -28.56 71.93 REMARK 500 5 SER A 40 -44.41 74.54 REMARK 500 5 LYS A 67 -63.71 -104.83 REMARK 500 6 THR A 3 -169.56 -123.16 REMARK 500 6 VAL A 23 20.84 -72.71 REMARK 500 6 GLU A 24 13.61 -156.35 REMARK 500 6 THR A 33 44.14 -90.61 REMARK 500 6 ASP A 34 -67.96 -167.44 REMARK 500 6 ASP A 37 93.98 63.55 REMARK 500 6 ASP A 39 85.89 47.34 REMARK 500 6 LYS A 67 -66.21 -125.96 REMARK 500 7 VAL A 26 49.20 -92.64 REMARK 500 7 PHE A 32 -71.38 -56.16 REMARK 500 7 THR A 33 48.79 -86.60 REMARK 500 7 ASP A 34 -58.14 -157.84 REMARK 500 7 ASP A 37 99.65 65.01 REMARK 500 7 VAL A 38 58.85 -110.33 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 75 0.07 SIDE CHAIN REMARK 500 5 ARG A 53 0.08 SIDE CHAIN REMARK 500 8 TYR A 75 0.08 SIDE CHAIN REMARK 500 14 TYR A 75 0.08 SIDE CHAIN REMARK 500 20 TYR A 75 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1 SOO A 101 REMARK 610 2 SOO A 101 REMARK 610 3 SOO A 101 REMARK 610 4 SOO A 101 REMARK 610 5 SOO A 101 REMARK 610 6 SOO A 101 REMARK 610 7 SOO A 101 REMARK 610 8 SOO A 101 REMARK 610 9 SOO A 101 REMARK 610 10 SOO A 101 REMARK 610 11 SOO A 101 REMARK 610 12 SOO A 101 REMARK 610 13 SOO A 101 REMARK 610 14 SOO A 101 REMARK 610 15 SOO A 101 REMARK 610 16 SOO A 101 REMARK 610 17 SOO A 101 REMARK 610 18 SOO A 101 REMARK 610 19 SOO A 101 REMARK 610 20 SOO A 101 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SOO A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KOO RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE REMARK 900 RELATED ID: 2KOP RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE REMARK 900 RELATED ID: 2KOQ RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE REMARK 900 RELATED ID: 2KOS RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE DBREF 2KOR A 1 81 UNP P72393 P72393_STRCO 2 82 SEQRES 1 A 81 ALA ALA THR GLN GLU GLU ILE VAL ALA GLY LEU ALA GLU SEQRES 2 A 81 ILE VAL ASN GLU ILE ALA GLY ILE PRO VAL GLU ASP VAL SEQRES 3 A 81 LYS LEU ASP LYS SER PHE THR ASP ASP LEU ASP VAL ASP SEQRES 4 A 81 SER LEU SER MET VAL GLU VAL VAL VAL ALA ALA GLU GLU SEQRES 5 A 81 ARG PHE ASP VAL LYS ILE PRO ASP ASP ASP VAL LYS ASN SEQRES 6 A 81 LEU LYS THR VAL GLY ASP ALA THR LYS TYR ILE LEU ASP SEQRES 7 A 81 HIS GLN ALA HET SOO A 101 63 HETNAM SOO S-[2-[3-[[(2S)-2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY- HETNAM 2 SOO BUTANOYL]AMINO]PROPANOYLAMINO]ETHYL] (E)-OCT-2- HETNAM 3 SOO ENETHIOATE FORMUL 2 SOO C19 H35 N2 O8 P S HELIX 1 1 THR A 3 ALA A 19 1 17 HELIX 2 2 SER A 42 ASP A 55 1 14 HELIX 3 3 PRO A 59 LYS A 64 1 6 HELIX 4 4 THR A 68 GLN A 80 1 13 LINK OG SER A 40 P24 SOO A 101 1555 1555 1.58 SITE 1 AC1 13 LEU A 11 PHE A 32 THR A 33 SER A 40 SITE 2 AC1 13 LEU A 41 MET A 43 VAL A 46 VAL A 47 SITE 3 AC1 13 ASP A 60 VAL A 63 LYS A 64 LEU A 66 SITE 4 AC1 13 LYS A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 232 0 1 4 0 0 4 6 0 0 0 7 END