HEADER RIBOSOMAL PROTEIN 06-JUL-09 2KLM TITLE SOLUTION STRUCTURE OF L11 WITH SAXS AND RDC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: RPLK, RPL11; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET11 KEYWDS L11, RDC, SAXS, METHYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL KEYWDS 2 PROTEIN, RNA-BINDING, RRNA-BINDING EXPDTA SOLUTION SCATTERING; SOLUTION NMR NUMMDL 10 AUTHOR J.WANG,X.ZUO,P.YU,C.D.SCHWIETERS,Y.WANG REVDAT 2 07-APR-10 2KLM 1 REMARK REVDAT 1 06-OCT-09 2KLM 0 JRNL AUTH J.WANG,X.ZUO,P.YU,I.J.BYEON,J.JUNG,X.WANG,M.DYBA, JRNL AUTH 2 S.SEIFERT,C.D.SCHWIETERS,J.QIN,A.M.GRONENBORN, JRNL AUTH 3 Y.X.WANG JRNL TITL DETERMINATION OF MULTICOMPONENT PROTEIN STRUCTURES JRNL TITL 2 IN SOLUTION USING GLOBAL ORIENTATION AND SHAPE JRNL TITL 3 RESTRAINTS. JRNL REF J.AM.CHEM.SOC. V. 131 10507 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19722627 JRNL DOI 10.1021/JA902528F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LEE,J.WALSH,P.YU,M.MARKUS,T.CHOLI-PAPADOPOULOU, REMARK 1 AUTH 2 C.SCHWIETERS,S.KRUEGER,D.DRAPER,Y.WANG REMARK 1 TITL THE STRUCTURE OF FREE L11 AND FUNCTIONAL DYNAMICS REMARK 1 TITL 2 OF L11 IN FREE, L11-RRNA(58NT) BINARY AND REMARK 1 TITL 3 L11-RRNA(58NT)-THIOSTREPTON TERNARY COMPLEXES REMARK 1 REF J. MOL. BIOL. V. 367 1007 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17292917 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KLM COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB101273. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 15N] ENTRY-1, REMARK 210 95% H2O/5% D2O; 0.2 MM ENTRY- REMARK 210 2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 265 REMARK 265 EXPERIMENT TYPE : SMALL ANGLE X-RAY SCATTERING REMARK 265 DATA ACQUISITION REMARK 265 RADIATION/NEUTRON SOURCE : APS ARGONNE REMARK 265 SYNCHROTRON (Y/N) : Y REMARK 265 BEAMLINE TYPE : 12-ID REMARK 265 BEAMLINE INSTRUMENT : NULL REMARK 265 DETECTOR TYPE : CCD CAMERA REMARK 265 DETECTOR MANUFACTURER DETAILS : HOME-MADE REMARK 265 TEMPERATURE (KELVIN) : 298 REMARK 265 PH : 6.5 REMARK 265 NUMBER OF TIME FRAMES USED : 20 REMARK 265 PROTEIN CONCENTRATION RANGE (MG/ML) : 1.0-5.0 REMARK 265 SAMPLE BUFFER : 50 MM NACL 20 MM REMARK 265 MES REMARK 265 DATA REDUCTION SOFTWARE : MARDETECTOR, HOME- REMARK 265 WRITTEN PROGRAM REMARK 265 GUINIER MEAN RADIUS OF GYRATION (NM) : 2.05 REMARK 265 SIGMA MEAN RADIUS OF GYRATION : 0.03 REMARK 265 R(XS-1) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-1) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 R(XS-2) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-2) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 P(R) PROTEIN LENGTH (NM) : 0.5 REMARK 265 REMARK 265 DATA ANALYSIS AND MODEL FITTING: REMARK 265 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 265 SOFTWARE USED : GNOM REMARK 265 SOFTWARE AUTHORS : NULL REMARK 265 STARTING MODEL : NULL REMARK 265 REMARK 265 CONFORMERS, NUMBER CALCULATED : 100 REMARK 265 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 265 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 265 ENERGY REMARK 265 REMARK 265 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 265 REMARK 265 OTHER DETAILS: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 18 H ALA A 20 1.50 REMARK 500 O MET A 126 H SER A 130 1.51 REMARK 500 O GLY A 24 H GLY A 28 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 -161.26 -62.54 REMARK 500 1 LEU A 10 -178.66 -179.92 REMARK 500 1 LYS A 16 22.55 40.73 REMARK 500 1 PRO A 19 40.26 -62.37 REMARK 500 1 ALA A 20 53.31 -146.14 REMARK 500 1 ALA A 26 -16.81 -43.29 REMARK 500 1 ALA A 32 -135.94 -47.10 REMARK 500 1 ILE A 34 -70.58 -52.52 REMARK 500 1 PHE A 41 -76.38 -64.20 REMARK 500 1 ALA A 51 -150.12 -174.34 REMARK 500 1 ILE A 57 95.10 -53.04 REMARK 500 1 ASP A 62 6.42 -66.03 REMARK 500 1 ARG A 63 71.02 64.44 REMARK 500 1 PHE A 67 118.57 173.47 REMARK 500 1 LYS A 70 -158.30 -174.27 REMARK 500 1 THR A 71 60.00 80.34 REMARK 500 1 PRO A 72 177.83 -43.53 REMARK 500 1 ALA A 74 -66.63 -146.54 REMARK 500 1 SER A 75 -20.65 -36.64 REMARK 500 1 ALA A 82 -78.77 -85.43 REMARK 500 1 GLU A 85 -85.21 -91.18 REMARK 500 1 LYS A 90 154.35 -49.66 REMARK 500 1 LYS A 95 114.95 56.49 REMARK 500 1 LYS A 109 -72.73 -85.74 REMARK 500 1 ASP A 114 14.93 -149.78 REMARK 500 1 THR A 118 -2.76 -150.74 REMARK 500 1 MET A 126 -73.83 -59.57 REMARK 500 1 ALA A 128 -70.82 -68.15 REMARK 500 1 ALA A 141 68.37 -179.59 REMARK 500 1 GLU A 143 23.51 174.74 REMARK 500 2 LYS A 3 -164.65 71.75 REMARK 500 2 LEU A 10 -173.79 -171.41 REMARK 500 2 LYS A 16 20.05 41.47 REMARK 500 2 PRO A 19 42.14 -62.79 REMARK 500 2 ALA A 20 55.58 -150.53 REMARK 500 2 ALA A 32 -135.68 -48.94 REMARK 500 2 ILE A 34 -72.24 -82.16 REMARK 500 2 PHE A 41 -75.80 -62.97 REMARK 500 2 MET A 48 -70.92 -106.80 REMARK 500 2 ALA A 51 -153.14 -156.80 REMARK 500 2 ILE A 57 86.66 -50.87 REMARK 500 2 ASP A 62 5.82 -66.89 REMARK 500 2 ARG A 63 69.69 63.88 REMARK 500 2 PHE A 67 -152.74 176.32 REMARK 500 2 VAL A 68 117.60 80.35 REMARK 500 2 ALA A 74 -171.53 179.69 REMARK 500 2 SER A 75 -17.32 -38.91 REMARK 500 2 ALA A 82 -83.84 -79.52 REMARK 500 2 LEU A 84 -160.52 42.34 REMARK 500 2 GLU A 85 -87.66 -164.37 REMARK 500 REMARK 500 THIS ENTRY HAS 366 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E34 RELATED DB: PDB REMARK 900 RELATED ID: 2E35 RELATED DB: PDB REMARK 900 RELATED ID: 2E36 RELATED DB: PDB DBREF 2KLM A 1 147 UNP P36238 RL11_THETH 1 147 SEQRES 1 A 147 MET LYS LYS VAL VAL ALA VAL VAL LYS LEU GLN LEU PRO SEQRES 2 A 147 ALA GLY LYS ALA THR PRO ALA PRO PRO VAL GLY PRO ALA SEQRES 3 A 147 LEU GLY GLN HIS GLY ALA ASN ILE MET GLU PHE VAL LYS SEQRES 4 A 147 ALA PHE ASN ALA ALA THR ALA ASN MET GLY ASP ALA ILE SEQRES 5 A 147 VAL PRO VAL GLU ILE THR ILE TYR ALA ASP ARG SER PHE SEQRES 6 A 147 THR PHE VAL THR LYS THR PRO PRO ALA SER TYR LEU ILE SEQRES 7 A 147 ARG LYS ALA ALA GLY LEU GLU LYS GLY ALA HIS LYS PRO SEQRES 8 A 147 GLY ARG GLU LYS VAL GLY ARG ILE THR TRP GLU GLN VAL SEQRES 9 A 147 LEU GLU ILE ALA LYS GLN LYS MET PRO ASP LEU ASN THR SEQRES 10 A 147 THR ASP LEU GLU ALA ALA ALA ARG MET ILE ALA GLY SER SEQRES 11 A 147 ALA ARG SER MET GLY VAL GLU VAL VAL GLY ALA PRO GLU SEQRES 12 A 147 VAL LYS ASP ALA HELIX 1 1 GLY A 24 GLN A 29 1 6 HELIX 2 2 ASN A 33 GLY A 49 1 17 HELIX 3 3 ALA A 74 GLY A 83 1 10 HELIX 4 4 THR A 100 GLN A 110 1 11 HELIX 5 5 ASP A 119 GLY A 135 1 17 SHEET 1 A 3 VAL A 4 ALA A 14 0 SHEET 2 A 3 ALA A 51 TYR A 60 -1 O ILE A 59 N ALA A 6 SHEET 3 A 3 SER A 64 THR A 66 -1 O THR A 66 N THR A 58 SHEET 1 B 2 ARG A 98 ILE A 99 0 SHEET 2 B 2 GLU A 137 VAL A 138 1 O GLU A 137 N ILE A 99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 184 0 0 5 5 0 0 6 0 0 0 12 END